Click http://www.ck12.org/saythanks (No sign in required) To access a customizable version of this book, as well as other interactive content, visit www.ck12.org CK-12 Foundation is a non-prot organization with a mission to reduce the cost of textbook materials for the K-12 market both in the U.S. and worldwide. Using an open-content, web-based collaborative model termed the FlexBook, CK-12 intends to pioneer the generation and distribution of high-quality educational content that will serve both as core text as well as provide an adaptive environment for learning, powered through the FlexBook Platform. Copyright 2014 CK-12 Foundation, www.ck12.org The names CK-12 and CK12 and associated logos and the terms FlexBook and FlexBook Platform (collectively CK-12 Marks) are trademarks and service marks of CK-12 Foundation and are protected by federal, state, and international laws. Any form of reproduction of this book in any format or medium, in whole or in sections must include the referral attribution link http://www.ck12.org/saythanks (placed in a visible location) in addition to the following terms. Except as otherwise noted, all CK-12 Content (including CK-12 Curriculum Material) is made available to Users in accordance with the Creative Commons Attribution-Non-Commercial 3.0 Unported (CC BY-NC 3.0) License (http://creativecommons.org/ licenses/by-nc/3.0/), as amended and updated by Creative Com- mons from time to time (the CC License), which is incorporated herein by this reference. Complete terms can be found at http://www.ck12.org/terms. Printed: August 24, 2014 www.ck12.org Chapter 1. Earth Forms and Life Begins CHAPTER 1 Earth Forms and Life Begins Lesson Objectives Explain how scientists learn about the history of life on Earth. Describe how and when planet Earth formed. Outline how the rst organic molecules arose. Describe the characteristics of the rst cells. Explain how eukaryotes are thought to have evolved. Vocabulary absolute dating extinction fossil fossil record geologic time scale Last Universal Common Ancestor (LUCA) molecular clock relative dating RNA world hypothesis Introduction Earth formed 4.6 billion years ago, and life rst appeared about 4 billion years ago. The rst life forms were micro- scopic, single-celled organisms. From these simple beginnings, evolution gradually produced the vast complexity and diversity of life today. The evolution of life on Earth wasnt always smooth and steadyfar from it. Living things had to cope with some astounding changes. Giant meteorites struck Earths surface. Continents drifted and shifted. Ice ages buried the planet in snow and ice for millions of years at a time. At least ve times, many, if not most, of Earths living things went extinct. Extinction occurs when a species completely dies out and no members of the species remain. But life on Earth was persistent. Each time, it came back more numerous and diverse than before. Earth in a Day Its hard to grasp the vast amounts of time since Earth formed and life rst appeared on its surface. It may help to think of Earths history as a 24-hour day, as shown in Figure 1.1. Humans would have appeared only during the last minute of that day. If we are such newcomers on planet Earth, how do we know about the vast period of time that went before us? How have we learned about the distant past? 1 www.ck12.org FIGURE 1.1 History of Earth in a Day. In this model of Earths history, the planet formed at midnight. What time was it when the rst prokaryotes evolved? Learning About the Past Much of what we know about the history of life on Earth is based on the fossil record. Detailed knowledge of modern organisms also helps us understand how life evolved. The Fossil Record Fossils are the preserved remains or traces of organisms that lived in the past. The soft parts of organisms almost always decompose quickly after death. On occasion, the hard partsmainly bones, teeth, or shellsremain long enough to mineralize and form fossils. An example of a complete fossil skeleton is shown in Figure 1.2. The fossil record is the record of life that unfolded over four billion years and pieced back together through the analysis of fossils. To be preserved as fossils, remains must be covered quickly by sediments or preserved in some other way. For example, they may be frozen in glaciers or trapped in tree resin, like the frog in Figure 1.3. Sometimes traces of organismssuch as footprints or burrowsare preserved (see the fossil footprints in Figure 1.3). The conditions required for fossils to form rarely occur. Therefore, the chance of an organism being preserved as a fossil is very low. You can watch a video at the following link to see in more detail how fossils form: http://www.youtube.com/w atch?v=A5i5Qrp6sJU . In order for fossils to tell us the story of life, they must be dated. Then they can help scientists reconstruct how life changed over time. Fossils can be dated in two different ways: relative dating and absolute dating. Both are described below. You can also learn more about dating methods in the video at this link: http://www.youtube.com/w atch?v=jM7vZ-9bBc0 . 2 www.ck12.org Chapter 1. Earth Forms and Life Begins FIGURE 1.2 Extinct Lion Fossil. This fossilized skele- ton represents an extinct lion species. It is rare for fossils to be so complete and well preserved as this one. FIGURE 1.3 The photo on the left shows an ancient frog trapped in hardened tree resin, or amber. The photo on the right shows the fossil footprints of a dinosaur. Relative dating determines which of two fossils is older or younger than the other, but not their age in years. Relative dating is based on the positions of fossils in rock layers. Lower layers were laid down earlier, so they are assumed to contain older fossils. This is illustrated in Figure 1.4. Absolute dating determines about how long ago a fossil organism lived. This gives the fossil an approximate age in years. Absolute dating is often based on the amount of carbon-14 or other radioactive element that remains in a fossil. You can learn more about carbon-14 dating by watching the animation at this link: http ://www.absorblearning.com/media/attachment.action?quick=bo&att=832 . Molecular Clocks Evidence from the fossil record can be combined with data from molecular clocks. A molecular clock uses DNA sequences (or the proteins they encode) to estimate how long it has been since related species diverged from a common ancestor. Molecular clocks are based on the assumption that mutations accumulate through time at a steady average rate for a given region of DNA. Species that have accumulated greater differences in their DNA sequences are assumed to have diverged from their common ancestor in the more distant past. Molecular clocks based on different regions of DNA may be used together for more accuracy. Consider the example in Table 1.1. The table shows how similar the DNA of several animal species is to human DNA. Based on these data, which organism do you think shared the most recent common ancestor with humans? 3 www.ck12.org FIGURE 1.4 Relative Dating Using Rock Layers. Rela- tive dating establishes which of two fossils is older than the other. It is based on the rock layers in which the fossils formed. TABLE 1.1: Comparing DNA: Humans and Other Animals Organism Similarity with Human DNA (percent) Chimpanzee 98 Mouse 85 Chicken 60 4 www.ck12.org Chapter 1. Earth Forms and Life Begins TABLE 1.1: (continued) Organism Similarity with Human DNA (percent) Fruit Fly 44 Geologic Time Scale Another tool for understanding the history of Earth and its life is the geologic time scale, shown in Figure 1.5. The geologic time scale divides Earths history into divisions (such as eons, eras, and periods) that are based on major changes in geology, climate, and the evolution of life. It organizes Earths history and the evolution of life on the basis of important events instead of time alone. It also allows more focus to be placed on recent events, about which we know the most. How Earth Formed: We Are Made of Stardust! Well start the story of life at the very beginning, when Earth and the rest of the solar system rst formed. The solar system began as a rotating cloud of stardust. Then, a nearby star exploded and sent a shock wave through the dust cloud, increasing its rate of spin. As a result, most of the mass became concentrated in the middle of the disk, forming the sun. Smaller concentrations of mass rotating around the center formed the planets, including Earth. You can watch a video showing how Earth formed at this link: http://www.youtube.com/watch?v=-x8-KMR0nx8 . At rst, Earth was molten and lacked an atmosphere and oceans. Gradually, the planet cooled and formed a solid crust. As the planet continued to cool, volcanoes released gases, which eventually formed an atmosphere. The early atmosphere contained ammonia, methane, water vapor, and carbon dioxide but only a trace of oxygen. As the atmosphere became denser, clouds formed and rain fell. Water from rain (and perhaps also from comets and asteroids that stuck Earth) eventually formed the oceans. The ancient atmosphere and oceans represented by the picture in Figure 1.6 would be toxic to todays life, but they set the stage for life to begin. The First Organic Molecules All living things consist of organic molecules. Therefore, it is likely that organic molecules evolved before cells, perhaps as long as 4 billion years ago. How did these building blocks of life rst form? Scientists think that lightning sparked chemical reactions in Earths early atmosphere. They hypothesize that this created a soup of organic molecules from inorganic chemicals. In 1953, scientists Stanley Miller and Harold Urey used their imaginations to test this hypothesis. They created a simulation experiment to see if organic molecules could arise in this way (see Figure 1.7). They used a mixture of gases to represent Earths early atmosphere. Then, they passed sparks through the gases to represent lightning. Within a week, several simple organic molecules had formed. You can watch a dramatization of Miller and Ureys experiment at this link: http://www.youtube.com/w atch?v=j9ZRHoawyOg . Recently, the ndings of Miller and Urey have come into question due to discrepancies in the composition of the early atmosphere, allowing a number of other ideas to surface on the formation of the rst organic molecules. One idea states that the active volcanoes on early Earth gave the necessary materials for life. Despite the simplied account discussed above, the problem of the origin of the rst organic compounds remains. Despite tremendous advances in biochemical analysis, answers to the problem remain. But whatever process did result in the rst organic molecules, it was probably a spontaneous process, with elements coming together randomly to form small compounds, and 5 www.ck12.org FIGURE 1.5 Geologic Time Scale. The geologic time scale divides Earths history into units that reect major changes in Earth and its life forms. During which eon did Earth form? What is the present era? small compounds reacting with other elements and other small compounds to make larger compounds. So, which organic molecule did come rst? 6 www.ck12.org Chapter 1. Earth Forms and Life Begins FIGURE 1.6 Ancient Earth. This is how ancient Earth may have looked after its atmosphere and oceans formed. FIGURE 1.7 Miller and Ureys Experiment. Miller and Urey demonstrated that organic molecules could form under simulated conditions on early Earth. What assump- tions were their simulation based upon? Which Organic Molecule Came First? Living things need organic molecules to store genetic information and to carry out the chemical work of cells. Modern organisms use DNA to store genetic information and proteins to catalyze chemical reactions. So, did DNA or proteins evolve rst? This is like asking whether the chicken or the egg came rst. DNA encodes proteins and proteins are needed to make DNA, so each type of organic molecule needs the other for its own existence. How could either of these two molecules have evolved before the other? Did some other organic molecule evolve rst, instead of DNA or proteins? 7 www.ck12.org RNA World Hypothesis Some scientists speculate that RNA may have been the rst organic molecule to evolve. In fact, they think that early life was based solely on RNA and that DNA and proteins evolved later. This is called the RNA world hypothesis. Why RNA? It can encode genetic instructions (like DNA), and some RNAs can carry out chemical reactions (like proteins). Therefore, it solves the chicken-and-egg problem of which of these two molecules came rst. Other evidence also suggests that RNA may be the most ancient of the organic molecules. You can learn more about the RNA world hypothesis and the evidence for it at this link: http://www.youtube.com/watch?v=sAkgb3yNgqg . The First Cells How organic molecules such as RNA developed into cells is not known for certain. Scientists speculate that lipid membranes grew around the organic molecules. The membranes prevented the molecules from reacting with other molecules, so they did not form new compounds. In this way, the organic molecules persisted, and the rst cells may have formed. Figure 1.8 shows a model of the hypothetical rst cell. FIGURE 1.8 Hypothetical First Cell. The earliest cells may have consisted of little more than RNA inside a lipid membrane. LUCA No doubt there were many early cells of this type. However, scientists think that only one early cell (or group of cells) eventually gave rise to all subsequent life on Earth. That one cell is called the Last Universal Common Ancestor (LUCA). It probably existed around 3.5 billion years ago. LUCA was one of the earliest prokaryotic cells. It would have lacked a nucleus and other membrane-bound organelles. To learn more about LUCA and universal common descent, you can watch the video at the following link: http://www.youtube.com/watch?v=G0UGpcea8Zg . Photosynthesis and Cellular Respiration The earliest cells were probably heterotrophs. Most likely they got their energy from other molecules in the organic soup. However, by about 3 billion years ago, a new way of obtaining energy evolved. This new way 8 www.ck12.org Chapter 1. Earth Forms and Life Begins was photosynthesis. Through photosynthesis, organisms could use sunlight to make food from carbon dioxide and water. These organisms were the rst autotrophs. They provided food for themselves and for other organisms that began to consume them. After photosynthesis evolved, oxygen started to accumulate in the atmosphere. This has been dubbed the oxygen catastrophe. Why? Oxygen was toxic to most early cells because they had evolved in its absence. As a result, many of them died out. The few that survived evolved a new way to take advantage of the oxygen. This second major innovation was cellular respiration. It allowed cells to use oxygen to obtain more energy from organic molecules. Evolution of Eukaryotes The rst eukaryotic cells probably evolved about 2 billion years ago. This is explained by endosymbiotic theory. As shown in Figure 1.9, endosymbiosis came about when large cells engulfed small cells. The small cells were not digested by the large cells. Instead, they lived within the large cells and evolved into cell organelles. FIGURE 1.9 From Independent Cell to Organelle. The endosymbiotic theory explains how eu- karyotic cells evolved. The large and small cells formed a symbiotic relationship in which both cells beneted. Some of the small cells were able to break down the large cells wastes for energy. They supplied energy not only to themselves but also to the large cell. They became the mitochondria of eukaryotic cells. Other small cells were able to use sunlight to make food. They shared the food with the large cell. They became the chloroplasts of eukaryotic cells. With their specialized organelles, eukaryotic cells were powerful and efcient. They would go on to evolve addi- tional major adaptations. These adaptations include sexual reproduction, cell specialization, and multicellularity. Eventually, eukaryotic cells would evolve into the animals, plants, and fungi we know today. Arsenic in Place of Phosphorus - New Biochemicals for Life? In late 2010, NASA scientists proposed the notion that the elements essential for life - carbon, hydrogen, oxygen, nitrogen, phosphorus, and sulfur - may have additional members. Scientists have trained a bacterium to eat and grow on a diet of arsenic, in place of phosphorus. Phosphorus chains form the backbone of DNA, and ATP, with three phosphates, is the principal molecule in which energy is stored in the cell. Arsenic is directly under phosphorus in the Periodic Table, so the two elements have similar chemical bonding properties. This nding raises the possibility 9 www.ck12.org that organisms could exist on Earth or elsewhere in the universe using biochemicals not currently known to exist. These results expand the notion of what life could be and where it could be. It could be possible that life on other planets may have formed using biochemicals with elements different from the elements used in life on Earth. In a classic example of the scientic community questioning controversial information, in the immediate six months after the original publication in the scientic journal Nature, the scientic community has raised various technical and theoretical issues concerning this nding. And as a response, the NASA team dismisses the criticism and stands by their data and interpretations. See http://www.nytimes.com/2010/12/03/science/03arsenic.html?pagewanted=1&_r=3 and http://science.nasa.gov/ science-news/science-at-nasa/2010/02dec_monolake/ for further information on this controversial nding. Lesson Summary Much of what we know about the history of life on Earth is based on the fossil record. Molecular clocks are used to estimate how long it has been since two species diverged from a common ancestor. The geologic time scale is another important tool for understanding the history of life on Earth. Earth formed about 4.6 billion years ago. At rst, Earth was molten and lacked an atmosphere and oceans. Gradually, the atmosphere formed, followed by the oceans. The rst organic molecules formed about 4 billion years ago. This may have happened when lightning sparked chemical reactions in Earths early atmosphere. RNA may have been the rst organic molecule to form as well as the basis of early life. The rst cells consisted of little more than an organic molecule such as RNA inside a lipid membrane. One cell (or group of cells), called the last universal common ancestor (LUCA), gave rise to all subsequent life on Earth. Photosynthesis evolved by 3 billion years ago and released oxygen into the atmosphere. Cellular respiration evolved after that to make use of the oxygen. Eukaryotic cells probably evolved about 2 billion years ago. Their evolution is explained by endosymbiotic theory. Eukaryotic cells would go on to evolve into the diversity of eukaryotes we know today. Lesson Review Questions Recall 1. What are fossils? 2. Describe how fossils form. 3. Give an overview of how Earth formed and how its atmosphere and oceans developed. 4. Describe Miller and Ureys experiment. What did it demonstrate? 5. State the RNA world hypothesis. 6. What was LUCA? What were its characteristics? Apply Concepts 7. Table 1.2 shows DNA sequence comparisons for some hypothetical species. Based on the data, describe evolutionary relationships between Species A and the other four species. Explain your answer. 10 www.ck12.org Chapter 1. Earth Forms and Life Begins TABLE 1.2: DNA Similarities Species DNA Similarity with Species A (%) Species B 42 Species C 85 Species D 67 Species E 91 Think Critically 8. Compare and contrast relative and absolute dating. 9. Why could cellular respiration evolve only after photosynthesis had evolved? Points to Consider The earliest organisms lived in the ocean. Even after eukaryotes evolved, it was more than a billion years before organisms lived on land for the rst time. What special challenges do you think organisms faced when they moved from water to land? How do you think they met these challenges? What adaptations might they have evolved? References 1. Mariana Ruiz Villarreal (LadyofHats) for CK-12 Foundation. CK-12 Foundation . CC BY-NC 3.0 2. User:Karora/Wikimedia Commons. http://commons.wikimedia.org/wiki/File:Thylacoleo_skeleton_in_Naraco orte_Caves.jpg . Public Domain 3. Frog in resin: Image copyright Galyna Andrushko, 2014; Footprint: Edmondo Gnerre. Frog in resin: http: //www.shutterstock.com; Footprint: http://commons.wikimedia.org/wiki/File:Tuba_City_Dinosaur_Track.jpg . Frog in resin: Used under license from Shutterstock.com; Footprint: CC BY 2.0 4. Mariana Ruiz Villarreal (LadyofHats) for CK-12 Foundation. CK-12 Foundation . CC BY-NC 3.0 5. Hana Zavadska. CK-12 Foundation . CC BY-NC 3.0 6. User:BrendelSignature/Wikimedia Commons. http://commons.wikimedia.org/wiki/File:Sunset_Marina.JPG . CC BY 3.0 7. User:Carny/He.Wikipedia, modied by CK-12 Foundation. http://commons.wikimedia.org/wiki/File:MUexp eriment.png . CC BY 2.5 8. Zachary Wilson. CK-12 Foundation . CC BY-NC 3.0 9. LadyofHats. CK-12 Foundation . CC-BY-NC-SA 3.0 11