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  • Bmi Methy Pheno LZ

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    The document shows a plot of SNPs on chromosome 6 between 31.4-31.9 Mb. It displays the negative log of the p-values for each SNP associated with a phenotype. The peak of association is at SNP chr6:31622388 with a p-value of 1.05E-8. Over 2,000 SNPs from this region are plotted, with p-values ranging from 1.05E-8 to 0.9997. No linkage disequilibrium information is available for the reference SNP.

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    The document shows a plot of SNPs on chromosome 6 between 31.4-31.9 Mb. It displays the negative log of the p-values for each SNP associated with a phenotype. The peak of association is at SNP chr6:31622388 with a p-value of 1.05E-8. Over 2,000 SNPs from this region are plotted, with p-values ranging from 1.05E-8 to 0.9997. No linkage disequilibrium information is available for the reference SNP.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
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    4 views2 pages

    Bmi Methy Pheno LZ

    Uploaded by

    u03020667724
    The document shows a plot of SNPs on chromosome 6 between 31.4-31.9 Mb. It displays the negative log of the p-values for each SNP associated with a phenotype. The peak of association is at SNP chr6:31622388 with a p-value of 1.05E-8. Over 2,000 SNPs from this region are plotted, with p-values ranging from 1.05E-8 to 0.9997. No linkage disequilibrium information is available for the reference SNP.

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    © All Rights Reserved
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    of 2

    methy_pheno_pv

    Plotted SNPs

    log10(pvalue)

    8
    6
    4
    2
    0

    100

    chr6:31622388

    HCP5
    HCG26

    MICB

    NFKBIL1

    MCCD1

    AIF1

    LTA

    DDX39B

    C6orf47

    PRRC2A
    LTB

    ATP6V1G2DDX39B
    SNORD117

    ABHD16A

    BAG6
    SNORA38

    NCR3

    SNORD84

    LY6G6E

    LY6G5C

    APOM

    CSNK2B

    TNF
    LST1

    MSH5

    MIR4646

    GPANK1

    ATP6V1G2

    VWA7

    LY6G5B

    LSM2

    SAPCD1

    DDAH2

    HSPA1B
    NEU1

    HSPA1A
    VARS

    LY6G6F

    EHMT2

    C6orf48

    C2

    SLC44A4
    ZBTB12

    HSPA1L

    LY6G6D
    LY6G6C

    SNORD48
    SNORD52

    C6orf25
    CLIC1
    MSH5SAPCD1

    31.4

    31.5

    31.6
    31.7
    Position on chr6 (Mb)

    31.8

    31.9

    80
    60
    40
    20
    0

    Recombination rate (cM/Mb)

    10

    date: Thu Nov 20 06:52:29 2014


    build: hg19
    display range: chr6:3140000031900000 [3140000031900000]
    hilite range: 0 0 [ 0 0 ]
    reference SNP: chr6:31622388
    number of SNPs plotted: 2114
    max P.value: 1.05E8 [chr6:31622388]
    min P.value: 9.97E1 [chr6:31708032]
    Warning: No usable LD information for reference SNP.

    Make more plots at http://csg.sph.umich.edu/locuszoom/

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