Rizal Khoirun Alfisah

Tugas 2 Bioinformatika

M0412084

1. Organisme Eukaryota
Spesies
: Aspergillus oryzae aspergillopepsin O (pepO) gene
Accesion Number
: M92927.1
Hasil Output GENSCAN
GENSCAN 1.0
Date run: 10-Dec-114 Time: 08:57:37
Sequence /tmp/12_10_14-08:57:37.fasta : 1993 bp : 54.49% C+G : Isochore 3
(51 - 57 C+G%)
Parameter matrix: HumanIso.smat
Predicted genes/exons:
Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- -----1.00 Prom +
146
185
40
0.29
1.01 Init +

302

651

350

61

84

426 0.999

34.17

1.02 Intr +

702

979

278

25

95

409 0.959

33.00

1.03 Intr +

985

1287

303

-37

105

540 0.885

40.31

1.04 Term +

1349

1686

338

47

36

651 0.882

50.89

Suboptimal exons with probability > 1.000

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- -----NO EXONS FOUND AT GIVEN PROBABILITY CUTOFF
Predicted peptide sequence(s):
>/tmp/12_10_14-08:57:37.fasta|GENSCAN_predicted_peptide_1|422_aa
MVILSKVAAVAVGLSTVASALPTGPSHSPHARRGFTINQITRQTARVGPKTASFPAIYSR
ALAKYGGTVPAHLKSAVASGHGTVVTSPEPNDIEYLTPVNIGGTTLNLDFDTGSADLWVF
SEELPKSEQTGHDVYKPSGNASKIAGASWDISYGDGSSASGDVYQDTVTVGGVTAQGQAV
EAASKISDQFVQDKNNDGLLGLAFSSINTGILRLHSVDDWCVLTKTTVKPKPQTTFFDTV
KDQLDAPLFAVTLKYHAPGSYDFGFIDKSKFTGELAYADVDDSQGFWQFTADGYSVGKGD
AQKAPITGIADTGTTLVMLDDEIVDAYYKQVQGAKNDASAGGYVFPCETELPEFTVVIGS
YNAVIPGKHINYAPLQEGSSTCVGGIQSNSGLGLSILGDVFLKSQYVVFDSQGPRLGFAA
QA
Penjelasan
Keterangan:
Warna Ungu
Warna Kuning
Warna Orange
Warna Hijau
Warna Biru

:
:
:
:
:

Promoter
Initial
Intron
Termination
Exon

1 aagcttactg gatgacaagg atcttcgtcg ctccatgcct agacgagaaa cactgcctag

61 tgctgctgat gtggaccgct tctctcctga gccggagtcc gttgattatc accactacct
121 tcatgatgac caccagagta gacaaagcta taaaggagcg ccttccagct gccctgagta
181 gctcatcact ctcccatcct ctccaacaag agtctgagtt cgtctaggct tgtgcttgtc
241 attctttcac atccagtctt tcgttccgtc ttctccacat ttcgtctaga gagcaatcac
301 tatggttatc ttgagcaaag tcgctgccgt cgcggtcggc ctctccacgg tcgcctctgc
361 attgcccacc ggtccctctc actcccccca tgctcgtcgg ggattcacca tcaaccagat
421 caccaggcag actgcccgcg tcggtcccaa gaccgccagc ttccccgcaa tctacagcag
481 ggcgcttgct aagtatggcg gtactgtgcc tgcgcacctc aagagcgctg ttgcctcggg
541 tcacggtact gtcgtgactt ctcccgagcc caatgacatt gagtacttga ctcctgtcaa
601 cattggcggc acgaccctga acctcgactt cgacactggc tcggccgatc tgtaagtaat
661 agacagttct ccacataaat tcacgactaa taataattca gctgggtctt ctccgaggag
721 ctccccaagt ccgagcagac cggccacgac gtctacaagc cttctggaaa cgcctccaag
781 atcgctggtg ccagctggga catcagctac ggtgatggca gcagtgccag cggtgacgtt
841 tatcaggata ctgtcaccgt gggtggcgtc actgcccagg gccaggccgt cgaggccgct

Rizal Khoirun Alfisah

Tugas 2 Bioinformatika

M0412084

901 agcaagatta gcgatcagtt tgttcaggac aagaacaatg acggtctgct gggtctcgct

961 ttcagctcga tcaacactgg taaggcatcc ttcgattgca cagtgttgat gactggtgtg
1021 tgctgacaaa gactacagtc aagcccaagc cccagactac cttcttcgac accgtcaagg
1081 accagctgga cgctccccta ttcgccgtga ccctgaagta ccatgctcct ggctcctatg
1141 acttcggctt catcgacaag agcaagttca ctggtgaact cgcatatgcc gatgtggacg
1201 attcccaggg cttctggcaa ttcactgctg acggttactc tgtcggaaag ggcgacgccc
1261 agaaggcccc catcactggt attgctggtg agtccccatc caatcgcaaa tcgaccaggt
1321 ctgggcatct actaacacct ctctccagac accggtacca ccctcgtcat gctcgatgac
1381 gaaatcgtcg atgcctacta caagcaggtc cagggcgcca agaacgacgc atccgctgga
1441 ggctacgtct tcccctgcga aaccgagctc cccgaattca ccgttgttat cggctcctac
1501 aacgccgtca tccctggcaa gcacatcaac tacgcccctc tccaggaggg cagctccact
1561 tgcgttggcg gtattcagag caactctggt ctcggcctct ccatcctggg tgatgtcttc
1621 ctcaagagcc agtacgtcgt cttcgactcc cagggtccca gactcggctt cgccgcccag
1681 gcttaaatgc ctgactaatg cgggccccgt gctctgatgc acggcctaag tctaatgaac
1741 cgacccccta gcgggtgatc cggctcgatg ttggagatga gtaatctgat ctaccgatgt
1801 atctatttct tcttgtatat ggtgactttg atttatgaga gatggtttgg tatgcgggac
1861 atgttgatgg atgattgcgg ctgtcttctt ggacctctgt atatatgacc acgtcgatcg
1921 ttacacgaga gggcagcttt caattacata acacaattca tcatattata cacactacct
1981 catccatgga cac
2. Organisme Prokaryota

Spesies

Accesion Number

: Streptococcus pneumoniae strain g54 surface

protein PspC (pspC) gene, pspC-7.1 allele,
complete cds; and IS3-Spn1 putative transposase
and hypothetical protein genes
: AF154034.1

Hasil Output GeneMarkS

GeneMark.hmm PROKARYOTIC (Version 3.25)
Date: Wed Dec 10 20:22:33 2014
Sequence file name: seq.fna
Model file name: GeneMark_hmm_heuristic.mod
RBS: false
Model information: Heuristic_model_for_genetic_code_11_and_GC_38
FASTA definition line:
AATGAGAAACGAATCCTTAGCAATGGCGGGAAAGAATTTGGAGTTGAGAATACAAAACGATTAACTATGG
Predicted genes
Gene
Strand
LeftEnd
RightEnd
Gene
Class
#

Length

<3

392

390

470

2779

2310

2990

3757

768

3748

4266

519

4400

5233

834

5233

5805

573

5844

6035

192

Keterangan:
Warna ungu : Initial yang benar

Rizal Khoirun Alfisah

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
2761
2821
2881
2941
3001
3061
3121
3181
3241
3301
3361

aatgagaaac
ttaactatgg
acaatttttg
ttgatgttgg
aatcacaaat
aatattcttc
ttagtttttc
ttacatgaag
aatatacagt
tgtttaaatc
tagctagtgt
agggaactac
gtagagaact
aaaaagtgaa
tagttaacaa
caacatacga
tgtctgaatt
aagcttcaga
ctcagcagaa
gtaactaccc
aagttaaaga
aaaaaattaa
aaaaaatcaa
aaaagaatgc
ttggagagca
tcaataaaaa
caaaaactgt
tcagagatta
tgacaatgga
gagaggctaa
aaagaccaac
caagcgtacc
tgagcaagat
ttgttgctct
atgtaaatac
cagttgtgac
aaaagccatc
caagcgtacc
tgcaaccaag
aggataaaaa
agaaaccaag
caggtatgca
gtactgagga
aaggcaagaa
caaaaccaga
ttaatcagga
caggagtggc
cattcatcgc
atatttagca
tctaataatt
gtgaaccgca
taagctcgag
cgttttttga
agattattgg
ttctctttgt
agattgtcct
aagagttgat

Tugas 2 Bioinformatika
gaatccttag
ctcatattgt
atggtatgag
tgattcactt
atgtagatca
ctgagttgat
cagtttatgc
ttataatccc
tcatattgga
aaattatgaa
agctgttgcc
ccaagcaccc
cgatttagaa
agagctctat
gttgcaaaac
agaactacag
tgaaaaggac
tacagcgaag
ggttgaagaa
aaccattact
agcggagctt
gcaagcagaa
gacagatcgt
agcgacttca
agcaacacct
ccggcagatg
tccagatggg
tgcaataaaa
tgaactggca
agcgaaattg
aactccagct
agatattaat
tttagatgat
tattaaggag
caaagtagaa
taaattcaaa
tgctccaaaa
ggcacaacct
tcctcaacca
gccatctgct
cgtaccggca
accaagtcct
taaaaagcca
accaagtgta
tatgcaacca
gaaagaaaaa
gtctaatcta
gatgaaaaga
tttgattggt
ataagtcatt
aaagttagac
aaaggacaaa
agttttcaaa
tcgcttccaa
cctttagaaa
caatgagtcc
agagctgata

caatggcggg
tttttatctc
catggttggt
gttgggagat
tatcttgttt
tggcttgacc
agttattttg
aaatggaaga
agggtatact
agaaaaatgt
agtcttgtta
acttcttcta
cgagataagg
tcaaaatcaa
attaataacg
aaactgatga
ttatcttctt
ccaaacaagc
gctgagaaaa
tacaaaacgc
gaactagtaa
gcggaagttg
aaaaaagcag
gagcaaggta
gataaaaaag
gtagccattc
gctaaactca
gttgtttctg
atgcaattaa
gtaccagagg
ccggatacca
caggaaaaag
atacaaaaac
cttgatgagt
attgaaaata
aaaggcttaa
ccaggtatgc
ggtactgagg
gaaggcaaga
ccaaaaccag
caacctggta
caaccagaag
tctgctccaa
ccggcacaac
agccctcaac
gctaagcttg
gttcttgaga
agaaaataat
taaccattga
tcatatagag
aattaaggct
ttttgtcctt
gttccgaaaa
tttggcgtta
ggttttaaag
gaaaaatttc
gtgatgtttc

aaagaatttg
tcttgcttgg
ttagtcttgc
atttggacag
aggacagtaa
ttgttgagtc
tatcgacgaa
atgaaaggtt
gaagatgaat
gctattctat
tgggaagtgt
ataggggaaa
taaagaaaga
ctaaaagtcg
agtatttgaa
tggagagtca
cgtcaagttc
cgacagaact
aagccaagga
ttgaacttga
aagtgaaagc
agagtaaaca
aagaagaagc
aaccaaagag
attattttga
aagaatcctt
caggagaagc
aaaacaagaa
ccaaattgaa
ttaaaccgca
aaccaatccc
aaaaagctaa
atcatctgca
ttaaaaagca
cagtccacaa
ctcaggacac
aaccaagtcc
ataaaaagcc
aaccaagcgt
atatgcaacc
ctgaggataa
gcaagaaacc
aaccagatat
ccggtactga
cagagggtaa
ctgtagcaac
tcattggtct
gattcagttt
agatcccaaa
atgaatctaa
ctttgtcaac
tcttttttga
ccaaaggcat
gaatagtgta
acagtctgaa
tccggttcct
aagtcttgtg

M0412084
gagttgagaa
ttgaggcaat
ttattttttc
tgaagcttat
aacatcctaa
atgcttatgt
tagctgaaga
aaaaataaaa
aaatattata
tcgaaaattt
ggttcatgcg
tgaaagtcag
ggtcagggaa
acataagaag
taaaataatt
atcagaagta
aggctcttcc
agaaaaaaag
tcaaaaagaa
aattgctgag
taaggaatct
agctgaggct
taagttgaag
gcgggtaaaa
aaaagacttc
gaacaaacta
tggaaatgcc
acttctatca
cgatgccatg
gccggaaaat
tcaaccagag
gcttgctgta
gaaagaaaaa
agctctttct
gatatttgca
accaaaagaa
tcaaccagaa
atctgctcca
accggcacaa
aagtcctcaa
aaagccatct
aagcgtaccg
gcaaccaagt
ggataaaaag
gaaaccaagt
agagaagaaa
ccttggtttg
tttaaaaata
gattttactt
gatataaaaa
tgtagtgggt
tattcagagc
tgcgcttgat
gttgaagggc
aaagaggatg
tattctgaaa
aatagctcaa

tacaaaacga
ggtgcataag
tatgctgatg
gcttgtcaat
ttacttttta
gacttttgtt
ggaaaagcta
tacccaattt
ggtatcgata
agtataggag
acagagaacg
gcagaacaac
tataaagaaa
actgtagata
caatcaacct
gataaagctg
acggaaccgg
gtagcagaag
gaagattacc
ttcgatgtga
cgagacgaga
acaaggttaa
gaagctgttg
cggagagctc
cgtccagctt
gatggtgaaa
tataatgagg
cagacagcag
tctaaattga
ccagagcatc
ggtaagaaac
gcaacctaca
catcgtcaga
gaaattgata
gacatggatg
ccagataaca
ggcaagaaac
aaaccaggta
cctggtactg
ccagaaggca
gctccaaaac
gcacaacctg
cctcaaccag
ccatctgctc
gtaccagaga
ttgccatcta
attggaactt
tccactttcg
ataattggta
gagaaggcta
tgaagtcagc
gataaaaatc
aagtttgatg
gttgacgatt
aacctgcttt
gtgaaacagc
aagcttgttt

Rizal Khoirun Alfisah

3421
3481
3541
3601
3661
3721
3781
3841
3901
3961
4021
4081
4141
4201
4261
4321
4381
4441
4501
4561
4621
4681
4741
4801
4861
4921
4981
5041
5101
5161
5221
5281
5341
5401
5461
5521
5581
5641
5701
5761
5821
5881
5941
6001
6061

aaaatctctt
agtttacgac
gactttcgat
tgttgtacaa
aagtcatagt
ctatcatatt
atgatatgga
cagtcactcc
tacactcaaa
gatgggcaat
tgatacgagg
aacaatgata
tttcgaggta
actcagggca
tattgatgat
aatgtaattg
catatgggac
actacaaata
gggctaagtc
acaatagctt
tccgatttca
cgtgaaatgg
tattgccagc
tgttccaaca
atttcgctgt
atggcaaatt
ccttgaatga
ttctgtcgca
tttaccagat
ttgtgttcga
tctagctgtt
agaactaacg
tttcctcctt
actcattttc
tacgtcccat
tgtattgtgc
ctctatcttt
gagaatagta
taatcatata
tatatccttg
taaaaacacc
gctttgccgt
ttcaatctct
tgttccacgg
tttgaggtta

Tugas 2 Bioinformatika
tattggttaa
tatcctgttg
ccaattgatt
tgtgaaagcg
aaggactaaa
taagaaagtg
gattgttaaa
ccggactgtt
gtggaagtca
atcggtcata
gatttgatga
gcacttgaaa
agggatctta
agatggggcg
gtctaaaatc
ttccatatga
tttttttcta
ttatagaacc
cttttagttt
gttccaatcg
aaatcccaaa
atgcttgaat
cttggtcact
ttgtttgtac
taaagccatc
ctgtcacatc
gattctctgc
ttttagcttg
aaccacgatt
taaagatgga
tcaagtgata
aaaactcagt
caatcggagt
tgcttgaaga
tttaggtact
tagccagtta
agtccagcct
acgatttttt
cctaagatta
ctttcttagt
ccaaaagtta
ttttctgagt
gccagggtgc
agatagtgag
atcaatcgtt

atgcatacga
tatgagcttc
catgatttga
atccaacacg
catatccata
atttcgaatg
atcttgcgca
tcaacgtccc
ttgagctttc
gaaatctttt
ttcttcttga
cggcgttttc
gacggttttt
tcgtagtcca
tggatattag
ttctttctaa
caataaaata
acaattaatt
taccttaatt
attaagtgat
gaaagactcc
tcccttaccc
atggagaatc
ttgttctaaa
taaaactggt
tgtgtagcac
cttcttgcca
taaattgagt
tcttagttct
ttgaatttca
gtagtaggtc
cattaattct
tctcttaact
cgttctaatt
ctccctcttg
agaagtatcg
tcatgtaaga
ccttttttgc
gaattattta
tcatagatct
gattttttct
tgtagatgta
tagcttgcga
gagcgagacc
tcaagtgttc

aaagtagggc
cagtagcgct
acacgcacac
attttagcac
gtaataattt
atagcttgtg
atgaagctca
aagacataat
gaatgacagt
caattaactt
cgatagaagt
taaggagaat
gaaagtcata
gtttggcgat
ggtctttaat
tgagttgttt
ggctccataa
tatccgaagg
cgtttattgt
ttaaatgttt
atcataccat
tcaagaaacc
gtattctcgt
ttgggtgaag
gataagtaaa
ttttccattg
acgtctcctt
acttttatca
aaataaatcc
gctttaagct
caacgagcta
tgaacaattt
tttttaggat
ctgtcctctc
gtttctcaac
tacgacttgg
ctttattaat
cgaactctat
tcccaaattt
gaactttatc
gtctaacttt
agactatgcc
aatggctcca
gcggaattca
gtaggcgatc

M0412084
gataaaaatg
tgatagcctt
gactcatagc
atgggaaaag
tgacgcgaca
ttcttccctc
tctccatctc
cttaggcaga
tgaagttgag
ttgagcaatc
ttcagcaacc
tctagaaggc
tttcttcaat
gattcccttg
gtctagtaat
tgtcgctttt
tatctatagt
atttagttct
tgtagtaatc
tctcatagcc
tgtctgggct
gatgataaga
agtgcttctc
ttgaaagatt
gcttttgagt
ttttagagcc
tatgagaaga
agccttgaac
gacgataagc
cttggtcctt
gtttaatggc
ctgtctttct
ggcattctcc
ttcaggtctc
aatagtatac
gagaccgtat
catttcttgt
tccgtaacga
atttgaaagc
atcataagtt
tggggtgcag
ttctccaatt
cggagtttgg
cgaactgcga
ttcatctt

tttatcgctg
gtattcatga
acggctaaga
ttgtctagct
tcggacggct
aagaacagtg
ccgattgaaa
tttctaaaat
atggaaagct
ttttggttga
atcattttag
ataccagttg
tgatttccgc
tgtgtatcct
tttgtgataa
cattataggt
ggatttaccc
gtattgcaca
aatatagtct
ataaaacatt
gttaccctta
atcgtgttga
tgtgaatgac
ataggcgata
acttgctgga
ttcaaattgg
atattttcgt
tcttttatga
ataatttccc
atctgttttg
ttttagaaga
tctttctctt
gctctcaggt
gtttttggct
ccgtttttcc
tcaagagaaa
tttaaatcag
tcaatccatt
ttctctaagc
aatttcataa
ttcattttga
gcaagagggc
cagcgccaga
cgttttctcc