Image Display and Exploration

Image Display and Exploration

immovie implay imshow imtool montage subimage warp Make movie from multiframe image Play movies, videos, or image sequences Display image Image Tool Display multiple image frames as rectangular montage Display multiple images in single figure Display image as texture-mapped surface

Image File I/O

analyze75info analyze75read dicomanon dicomdict dicominfo dicomlookup dicomread dicomuid dicomwrite hdrread hdrwrite interfileinfo interfileread isrset Read metadata from header file of Analyze 7.5 data set Read image data from image file of Analyze 7.5 data set Anonymize DICOM file Get or set active DICOM data dictionary Read metadata from DICOM message Find attribute in DICOM data dictionary Read DICOM image Generate DICOM unique identifier Write images as DICOM files Read high dynamic range (HDR) image Write Radiance high dynamic range (HDR) image file Read metadata from Interfile file Read images in Interfile format Check if file is an R-Set

makehdr nitfinfo nitfread rsetwrite tonemap

Create high dynamic range image Read metadata from National Imagery Transmission Format (NITF) file Read image from NITF file Create reduced resolution data set from image file Render high dynamic range image for viewing

Image Types and Type Conversions

demosaic gray2ind grayslice graythresh im2bw im2double im2int16 im2java2d im2single im2uint16 im2uint8 ind2gray ind2rgb label2rgb mat2gray rgb2gray Convert Bayer pattern encoded image to truecolor image Convert grayscale or binary image to indexed image Convert grayscale image to indexed image using multilevel thresholding Global image threshold using Otsu's method Convert image to binary image, based on threshold Convert image to double precision Convert image to 16-bit signed integers Convert image to Java buffered image Convert image to single precision Convert image to 16-bit unsigned integers Convert image to 8-bit unsigned integers Convert indexed image to grayscale image Convert indexed image to RGB image Convert label matrix into RGB image Convert matrix to grayscale image Convert RGB image or colormap to grayscale

Spatial Transformation and Image Registration

Spatial Transformations
checkerboard findbounds fliptform imcrop impyramid imresize imrotate imtransform makeresampler maketform tformarray tformfwd tforminv Create checkerboard image Find output bounds for spatial transformation Flip input and output roles of TFORM structure Crop image Image pyramid reduction and expansion Resize image Rotate image Apply 2-D spatial transformation to image Create resampling structure Create spatial transformation structure (TFORM) Apply spatial transformation to N-D array Apply forward spatial transformation Apply inverse spatial transformation

Image Registration
cp2tform cpcorr cpselect cpstruct2pairs normxcorr2 Infer spatial transformation from control point pairs Tune control-point locations using cross correlation Control Point Selection Tool Convert CPSTRUCT to valid pairs of control points Normalized 2-D cross-correlation

Image Analysis and Statistics

Image Analysis
bwboundaries Trace region boundaries in binary image

bwtraceboundary Trace object in binary image cornermetric edge hough houghlines houghpeaks qtdecomp qtgetblk qtsetblk Create corner metric matrix from image Find edges in grayscale image Hough transform Extract line segments based on Hough transform Identify peaks in Hough transform Quadtree decomposition Block values in quadtree decomposition Set block values in quadtree decomposition

Texture Analysis
entropy entropyfilt graycomatrix graycoprops rangefilt stdfilt Entropy of grayscale image Local entropy of grayscale image Create gray-level co-occurrence matrix from image Properties of gray-level co-occurrence matrix Local range of image Local standard deviation of image

Pixel Values and Statistics

corr2 imcontour imhist 2-D correlation coefficient Create contour plot of image data Display histogram of image data

impixel improfile mean2 regionprops std2

Pixel color values Pixel-value cross-sections along line segments Average or mean of matrix elements Measure properties of image regions Standard deviation of matrix elements

Image Arithmetic
imabsdiff imadd imcomplement imdivide imlincomb immultiply imsubtract Absolute difference of two images Add two images or add constant to image Complement image Divide one image into another or divide image by constant Linear combination of images Multiply two images or multiply image by constant Subtract one image from another or subtract constant from image

Image Enhancement and Restoration

Image Enhancement
adapthisteq decorrstretch histeq imadjust imnoise intlut medfilt2 Contrast-limited adaptive histogram equalization (CLAHE) Apply decorrelation stretch to multichannel image Enhance contrast using histogram equalization Adjust image intensity values or colormap Add noise to image Convert integer values using lookup table 2-D median filtering

ordfilt2 stretchlim wiener2

2-D order-statistic filtering Find limits to contrast stretch image 2-D adaptive noise-removal filtering

Image Restoration (Deblurring)

deconvblind deconvlucy deconvreg deconvwnr edgetaper otf2psf psf2otf Deblur image using blind deconvolution Deblur image using Lucy-Richardson method Deblur image using regularized filter Deblur image using Wiener filter Taper discontinuities along image edges Convert optical transfer function to point-spread function Convert point-spread function to optical transfer function

Linear Filtering and Transforms

Linear Filtering
convmtx2 fspecial imfilter 2-D convolution matrix Create predefined 2-D filter N-D filtering of multidimensional images

Linear 2-D Filter Design

freqz2 fsamp2 ftrans2 fwind1 fwind2 2-D frequency response 2-D FIR filter using frequency sampling 2-D FIR filter using frequency transformation 2-D FIR filter using 1-D window method 2-D FIR filter using 2-D window method

Image Transforms
dct2 dctmtx fan2para fanbeam idct2 ifanbeam iradon para2fan phantom radon 2-D discrete cosine transform Discrete cosine transform matrix Convert fan-beam projections to parallel-beam Fan-beam transform 2-D inverse discrete cosine transform Inverse fan-beam transform Inverse Radon transform Convert parallel-beam projections to fan-beam Create head phantom image Radon transform

Morphological Operations
Intensity and Binary Images
conndef imbothat imclearborder imclose imdilate imerode imextendedmax imextendedmin imfill imhmax Create connectivity array Bottom-hat filtering Suppress light structures connected to image border Morphologically close image Dilate image Erode image Extended-maxima transform Extended-minima transform Fill image regions and holes H-maxima transform

imhmin imimposemin imopen imreconstruct imregionalmax imregionalmin imtophat watershed

H-minima transform Impose minima Morphologically open image Morphological reconstruction Regional maxima Regional minima Top-hat filtering Watershed transform

Binary Images
applylut bwarea bwareaopen bwdist bweuler bwhitmiss bwlabel bwlabeln bwmorph bwpack bwperim bwselect bwulterode bwunpack imregionalmin imtophat Neighborhood operations on binary images using lookup tables Area of objects in binary image Morphologically open binary image (remove small objects) Distance transform of binary image Euler number of binary image Binary hit-miss operation Label connected components in 2-D binary image Label connected components in binary image Morphological operations on binary images Pack binary image Find perimeter of objects in binary image Select objects in binary image Ultimate erosion Unpack binary image Regional minima Top-hat filtering

makelut

Create lookup table for use with applylut

Structuring Element Creation and Manipulation

getheight getneighbors getnhood getsequence isflat reflect strel translate Height of structuring element Structuring element neighbor locations and heights Structuring element neighborhood Sequence of decomposed structuring elements True for flat structuring element Reflect structuring element Create morphological structuring element (STREL) Translate structuring element (STREL)