echizen_tm

Sep. 16, 2012

(Wavelet Matrix)

(1)

(2)

1
1

(=)
()



2000

ID1,000,000ID5,000,000
20

5000

20005000
500

()2


(1)
FM-Index
(Suffix Array)

BWT(Burrows Wheeler)
RBWT(Burrows Wheeler)

RBWT


(2)
gwt
tb_yasu

tb_yasu

http://d.hatena.ne.jp/tb_yasu/
20120909/1347196146



libcds: (F. Claude)

https://github.com/fclaude/libcds

wavelet-matrix-cpp: takeda25

wat-arrayrank()
https://github.com/hiroshi-manabe/wavelet-matrix-cpp

shellinford: echizen_tm

FM-Indexrank
https://code.google.com/p/shellinford/



[1] The Wavelet Matrix

Claude & Navarro; SPIRE2012

http://www.dcc.uchile.cl/~gnavarro/ps/
spire12.4.pdf

[2] (takeda25)
http://d.hatena.ne.jp/takeda25/

[3] EchizenBlog-Zwei(echizen_tm)
http://d.hatena.ne.jp/echizen_tm/