You are on page 1of 25

References

……………………………………..………...
References

REFERENCES

Abel PP, Nelson RS, Dc B. (1986) Delay of disease development in transgenic plants
that express the tobacco mosaic virus coat protein gene. Science
1986;232:738.-43.

Ames G. F-L., C.S. Mimura and Shyamala V. (1990) Bacterial periplasmic


permeases belong to a family of transport proteins operating from Escherichia
coli to human: traffic ATPases. FEMs Microbiological Review 75:429-446.

Anderson, C (1993) Genome shortcut leads to problems. Science, 259, 1684-1687.

Ankenbauer, R.G. and Nester E.W. (1990) Sugar-mediated induction of


Agrobacterium tumefaciens virulence genes: structural specificity and
activities of monosaccharides. Journal of Bacteriology 172:6442-6446.

Bailey JA, Liu G, Eichler E.E(2003) An Alu transposition model for the origin and
expansion of human segmental duplications. Am J Hum Genet.;73:823–834.
doi: 10.1086/378594.

Baron C., Llosa M., Zhou S. and Zambryski P.C. (1997) VirB1, a component of
the T-complex transfer machinery of Agrobacterium tumefaciens is processed
to a C-terminal secreted product VirB1*. Journal of Bacteriology 179:1203-
1210.

Batzer MA, Deininger P.L. (2002) Alu repeats and human genomic diversity. Nat
Rev Genet.;3:370–379. doi: 10.1038/nrg798.

Beaupre, CE, Bohne J., Dale E.M., and Binns A.N. (1997) Interactions between
VirB9 and VirB10 proteins involved in the movement of DNA from
Agrobacterium tumefaciens into plant cells. Journal of Bacteriology 179:78-
89.

Beck, E., and B. Zink. (1981). Nucleotide sequence and genome organization of
filamentous bacteriophage fl and fd. Gene 16:35-58.

Beck, E., R. Sommer, E. A. Austrswald, C. Kunr, B. Zink, G. Osterberg, H.


Schaller, K Sugimoto, H. Sugisakd, T. Okamoto, and M. Takanami. (1978)
Nucleotide sequence of bacteriophage fd DNA. Nucleic Acids Res.
5:44954503.

Beers F, Jongbloed A.W. ( l992) Effect of supplementary Aspergillus niger phytase


in diets for piglets on their performance and apparent digestibility of
phosphorus. Anim Prod;55:425-30.

165
References

Bellet, A. J. D., H. G. Busse, and R. L. Baldwin. (1971) Tandem genetic duplication


in a derivative of phage lambda, p. 501-513. In A. D. Hershey (ed.),
Bacteriophage lambda. Cold Spring Harbor Laboratory, Cold Spring Harbor,
N.Y.

Benhamou N, Broglie K, Broglie R, Chet I. (l993) Antifungal effect of bean


endochitinase on Rhizoctonia solani: ultrastructural changes and cytochemical
aspects of chitin breakdown. Can I Microbiol;39: 3 18-28.

Benvenuto, E., Ordas, R. J., Tavazza, R., Ancora, G., Biocca, S., Cattaneo, A. and
Galeffi, P. (1991) Plant Mol. Biol, 17, 865–874.

Berger B.R. and Christie P.J. (1993) The Agrobacterium tumefaciens virB4 gene
product is an essential virulence protein requiring an intact nucleoside
triphosphate-binding domain. Journal of Bacteriology 175: 1723-1734.

Berger, B.R. and Christie P.J. (1994) Genetic complementation analysis of the
Agrobacterium tumefaciens virB operon: virB2 through virB11 are essential
virulence genes. Journal of Bacteriology 176:3646-3660.

Bevan M. (1984) Binary Agrobacterium vectors for plant transformation. Nucleic


Acids Res 12: 8711–8721

Bingham, P. M., Kidwell, M. G. and Rubin, G. M.


(1982) Cell 29:995-1004.

Binns A.N., Beaupre C.E.and Dale E.M. (1995) Inhibition of VirB-mediated


transfer of diverse substrate from Agrobacterium tumefaciens by the IncQ
plasmid RSF1010. Journal of Bacteriology 177:4890-4899.

Blattner, F. R., B. G. Williams, A. E. Blechl, K. Denniston- Thompson, H. E.


Faber, L. E. Furlong, D. J. Grunwald, D. 0. Keifer, D. D. Moore, J. W.
Schumm, and D. Smithies. (1977) Charon phages: safer derivatives of
bacteriophage lambda for DNA cloning. Science 196:161-169.

Boysen, C., Simon, M.I. and Hood, L. (1997) Fluorescence-based sequencing


directly from bacterial and P1-derived artificial chromosomes. BioTechniques,
23, 978-982.

Bradley L.R., Kim J.S. and Matthysse A.G. (1997) Attachment of Agrobacterium
tumefaciens to Carrot Cells and Arabidopsis wound sites is correlated with the

166
References

presence of a cell-associated, acidic polysaccharide. Journal of Bacteriology


179:5372-5379.

Bravo Angel A.M, Hohn B. and Tinland B. (1998) The omega sequence of VirD2
is important but not essential for efficient transfer of the T-DNA by
Agrobacterium tumefaciens. Molecular Plant-Microbe Interactions 11:57-63.

Briggs SP. (1992) Identification and isolation of agronomically important genes from
plants. In: Stalker HT, Murphy JP, eds. Plant breeding in the 1990s.
Wallingford, CT: CAB International,:373-87.

Bundock P., den Dulk-Ras A., Beijerbergen A. and Hooykaas P.J.J. (1995). Trans-
kingdon T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces
cerevisiae. EMBO Journal 14:3206-3214.

Burke, D.T . (1990) YAC cloning: options and problems. GATA, 7, 94-99.

Burke, D.T., Carle, G. and Olsen, M.V. (1987) Cloning of large segments of
exogenous DNA into yeast by means of artificial chromosome vectors.
Science, 236, 806-812.

Cai, L., Taylor, J.F., Wing, R.A., Gallagher, D.S., Woo, S.-S. and Davis, S.K.
(1995) Construction and characterization of a bovine bacterial artificial
chromosome library. Genomics, 29, 413-425.

Cai, W.-W., Reneker, J., Chow, C.-W., Vaishnav, M. and Bradley, A. (1998) An
anchored framework BAC map of mouse chromosome 11 assembled using
multiplex oligonucleotide hybridization. Genomics, 54, 387-397.

Cangelosi G.A., Ankenbauer R.G. and Nester E.W. (1990) Sugars induce the
Agrobacterium virulence genes through a periplasmic binding protein and a
transmembrane signal protein. Proceedings of the National Academy of
Sciences USA 87:6708-6712.

Cangelosi G.A., Hung L., Puvanesarajah V., Stacey G., Ozga D.A., Leigh J.A.
and Nester E.W. (1987) Common loci for Agrobacterium tumefaciens and
Rhizobium meliloti exopolysaccharide synthesis and their role in plant
interaction. Journal of Bacteriology 169:2086-2091.

Carson, R. (1962) Silent Spring. The Riverside Press, Cambridge.

167
References

Chang C.H. and Winans S.C. (1992) Functional roles assigned to the periplasmic,
linker and receiver domains of the Agrobacterium tumefaciens VirA protein.
Journal of Bacteriology 174:7033-7039.

Chawla.H.S. (2003)Introduction to plant biotechnology, Oxford and IBH Publishing


Co.Pvt.Ltd.new Delhi,pp.211.

Chen JM, Stenson PD, Cooper DN, Ferec C. (2005)A systematic analysis of LINE-
1 endonuclease-dependent retrotranspositional events causing human genetic
disease. Hum Genet;117:411–427. doi: 10.1007/s00439-005-1321-0.

Chen QJ, Zhou HM, Chen J, Wang XC. (2006) A Gateway-based platform for
multigene plant transformation. Plant Mol Biol 62: 927–936

Cheng M, Lowe BA, Spencer TM, Ye X, Armstrong CL. (2004) Factors


influencing Agrobacterium-mediated transformation of monocotyledonous
species. In Vitro Cell Dev Biol Plant 40: 31–45

Choi, S., Creelman, R.A., Mullet, J.E. and Wing, R.A. (1995) Construction and
characterization of bacterial artificial chromosome library of Arabidopsis
thaliana. Plant Mol. Biol. Reptr.

Christensen AH, Sharrock RA, Quail PH. (1992) Maize polyubiquitin genes:
structure, thermal perturbation of expression and transcript splicing, and
promoter activity following transfer to protoplasts by electroporation. Plant
Mol Biol 18: 675–689.

Christie P.J. (1997) Agrobacterium tumefaciens T-complex transport apparatus: a


paradigm for a new family of multifunctional transporters in Eubacteria.
Journal of Bacteriology 179:3085-3094.

Cooper B, Lapidot M, Heick JA, Beachy RN, Dodds JA. (1994) Multi-virus
resistance in transgenic tobacco plants expressing a tobacco mosaic virus
dysfunctional movement protein. In: Scientific program and abstracts of the
13th annual meeting of the American Society for Virology. Madison, WI:
American Society for Virology; p:250.

Cordaux R, Udit S, Batzer MA, Feschotte C. ( 2006) Birth of a chimeric primate


gene by capture of the transposase gene from a mobile element. Proc Natl
Acad Sci USA;103:8101–8106. doi: 10.1073/pnas.0601161103.

168
References

Cramer, C. L., Weissenborn, D. L., Oishi, K. K., Grabau, E. A., Bennett, S.,
Ponce, E., Grabowski, G. A. and Radin, D. N.( 1996) Ann. NY Acad. Sci.,
792; 62–71.

Danesh, D., Peñula, S., Mudge, J., Denny, R.L., Nordstrom, H., Martinez, J.P.
and Young, N.D. (1998) A bacterial artificial chromosome library for soybean
and identification of clones near a major cyst nematode resistance gene.
Theor. Appl. Genet., 96;p:196-202.

Dang T.A.T. and Christie P.J. (1997) The VirB4 ATPase of Agrobacterium
tumefaciens is a cytoplasmic membrane protein exposed at the periplasmic
surface. Journal of Bacteriology 179:453-462.

Das A. and Xie Y.H. (1998) Construction of transposon Tn3phoA: its application in
defining the membrane topology of the Agrobacterium tumefaciens DNA
transfer proteins. Molecular Microbiology 27:405-414.

Davidson, N., and W. Szybalski. (1971) Physical and chemical characteristics of


lambda DNA. In A. D. Hershey (ed.), Bacteriophage lambda. Cold Spring
Harbor Laboratory, Cold Spring Harbor N.Y p 45-82.

Davis, R. W., and J. S. Parldnson. (1971) Deletion mutants of lambda. III. Physical
structure of attO. J. Mol. Biol. 56:403- 423.

De Block, M., Herrera-Estrella, L., van Montagu, M., Schell, J. and Zambryski,
P. (1984) EMBOJ, 3; 1681–1689.

Deblaere R, Reynaerts A, Höfte H, Hernalsteens JP, Leemans J, Van Montagu


M. (1987) Vectors for cloning in plant cells. Methods Enzymol 153: 277–292.

Depicker A, Stachel S, Dhaese P, Zambryski P, Goodman HM. (1982) Nopaline


synthase: transcript mapping and DNA sequence. J Mol Appl Genet 1: 561–
573.

Dotto, G. P., and N. D. Zinder. (1983) The morphogenetic signalof bacteriophage fl.
Virology 130:252-256.

Dotto, G. P., K. Horinuchi, and N. D. Zinder. (1984) The functional origin of


bacteriophage fl DNA replication: its signal and domains. J. Mol. Biol.
172:507-521.

169
References

Doty S.L., Yu N.C., Lundin J.I., Heath J.D. and Nester E.W. (1996) Mutational
analysis of the input domain of the VirA protein of Agrobacterium
tumefaciens. Journal of Bacteriology 178:961-970.

Douglas C.J., Halperin W. and Nester E.W. (1982) Agrobacterium tumefaciens


mutants affected in attachment to plant cell. Journal of Bacteriology
152:1265-1275.

During, K., Hippe, S., Kreuzaler, F. and Schell, J. (1990) Plant Mol. Biol. 15,
281–293.

Dürrenberger F., Crameri A., Hohn B. and Koukolikova-Nicola Z. (1989)


Covalently bound VirD2 protein of Agrobacterium tumefaciens protects the T-
DNA from exonucleolytic degradation. Proceedings of the National Academy
of Sciences of USA 86:9154-9158.

Elledge, S. J., and G. C. Walker. (1985) Phasmid vectors for identification of genes
by complementation of Eschenchia coli mutants. J. Bacteriol. 162:777-783.

Fedoroff, N. (1983) Mobile Genetic Elements, J. Shapiro, Ed., (Academic Press)


New York, pp. 1-63.

Fernández D., Spudich G.M., Zhou X.R., Berger B.R. and Christie P.J. (1996)
Agrobacterium tumefaciens VirB7 lipoprotein is required for stabilisation of
VirB proteins during assembly of the T-complex transport apparatus. Journal
of Bacteriology 178:3168-3176.

Filichkin S.A. and Gelvin S.B. (1993) Formation of a putative relaxation


intermediate during T-DNA processing directed by Agrobacterium
tumefaciens VirD1/D2 endonuclease. Molecular Microbiology 8:915-926.

Finberg K.E., Muth T.R., Young S.P., Maken J.B., Heitritter S.M., Binns A.N.
and Banta L.M. (1995) Interactions of VirB9, -10 and -11 with the membrane
fraction of Agrobacterium tumefaciens: solubility studies provide evidence of
tight associations. Journal of Bacteriology 177:4881-4889.

Findenegg GR, Nelernans JA. (l993) The effect of phytase on the availability of P
from myo-inositol hexaphosphate (phytate) for maize roots. Plant Soil;l54:
189-96.

170
References

Firth N., Ippen-Ihler K. and Skurray R.A. (1996) Structure and function of the F
factor and mechanism of conjugation, p. 2377-2401.

Food Standards Agency. (2002). GO10008 Evaluating the risks associated with
using GMOs in human foods.
www.foodstandards.gov.uk/science/sciencetopics/gmfoods/gm_reports

Fox, M.W. (1992) Superpigs and Wondercorn. Lyons and Burford Publ., New York.

Fraley RT, Rogers SG, Horsch RB (1986) Genetic transformation in higher plants.
CRC Crit Rev Plant Sci 4: 1–46.

Fullner K.J., Lara J.C. and Nester E.W. (1996) Pilus assembly by Agrobacterium
T-DNA transfer genes. Science 273:1107-1109.

Gerdes K, Rasmussen PB, Molin S. (1986) "Unique type of plasmid maintenance


function: postsegregational killing of plasmid-free cells". Proc. Natl. Acad.
Sci. U.S.A. 83 (10): 3116. doi:10.1073/pnas.83.10.3116.

Gheysen G., Villarroel R. and Van Montagu M. (1989) Illegitimate recombination


in plants: a model for T-DNA integration. Genes Development 5:287-297.

Golemboski BB, Lomonossoff GP, Zaitlin M. (1990) Plants transformed with a


tobacco mosaic nonstructural gene sequence are resistant to the virus. Proc
Nail Acad Sci U S A;87:63ll-5.

Green, E.D., Riethman, H.C., Dutchik, J.E. and Olson, M.V. (1991) Detection and
characterization of chimeric yeast artificial-chromosome clones. Genomics,
11, 658 - 669.

Hajdukiewicz P, Svab Z, Maliga P. (1994) The small, versatile pPZP family of


Agrobacterium binary vectors for plant transformation. Plant Mol Biol 25:
989–994.

Hamilton, C.M. (1997) A binary-BAC system for plant transformation with high
molecular weight DNA. Gene 200:107-116.

Han JS, Boeke JD. (2004)LINE-1 retrotransposons: modulators of quantity and


quality of mammalian gene expression? Bioessays.;27:775–784. doi:
10.1002/bies.20257.

171
References

Hanson B, Engler D, Moy Y, Newman B, Ralston E, Gutterson N. (1999) A simple


method to enrich an Agrobacterium-transformed population for plants
containing only T-DNA sequences. Plant J 19: 727–734.

Hanson, R.E., Zwick, M.S., Choi, S., Islam-Faridi, M.N., McKnight, T.D., Wing,
R.A., Price, H.J. and Stelly, D.M. (1995) Fluorescent in situ hybridization of
a bacterial chromosome. Genome, 38, 646-651.

Haq, T. A., Mason, H. S., Clements, J. D. and Artnzen, C. J.(1995) Science, 268,
714–715.

Heath J.D., Charles T.C. and Nester E.W. (1995) Ti plasmid and chromosonally
encoded two-component systems important in plant cell transformation by
Agrobacterium tumefaciens, p. 367-385. In: Hoch J.A. and Silhavy T.J. (ed.),
Two-component signal transduction. ASM Press, Washington DC.

Hedges DJ, Batzer MA. (2005) From the margins of the genome: mobile elements
shape primate evolution. Bioessays.;27:785–794. doi: 10.1002/bies.20268.

Heinemann J.A. and Sprague G.F. (1989) Bacterial conjugative plasmids mobilise
DNA transfer between bacteria and yeast. Nature 340:205-209.

Hellens R, Mullineaux P, Klee H. (2000) Technical focus: a guide to Agrobacterium


binary Ti vectors. Trends Plant Sci 5: 446–451.

Herrera-Estrella, A, M Van Montagu and K Wang. (1990) A bacterial peptide


acting as a plant nuclear targeting signal: the amino-terminal portion of
Agrobacterium VirD2 protein directs the b -galactosidase fusion protein into
tobacco nuclei. Proceedings of the National Academy of Sciences of the USA
87:9534-9537.

Hiatt, A. and Mostov, K. (1993) in Transgenic Plants: Fundamentals and


Applications (ed. Hiatt, A.), Marcel Dekker, Inc, New York, pp. 221–237.

Hiei Y, Ohta S, Komari T, Kumashiro T. (1994) Efficient transformation of rice


(Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the
boundaries of the T-DNA. Plant J 6: 271–282.

Higgings C.F., Hyde S.C., Mimmack M.M., Gileadi U., Gill D.R. and Gallagher
M.P. (1990) Binding protein-dependent transport systems. Journal of
Bioenergy and Biomembranes 22:571-592.

172
References

Hille J., Wullems G., Schilperoort R.A. (1983) Non-oncogenic T-region mutants of
Agrobacterium tumefaciens do transfer T-DNA into plant cells. Plant
Molecular Biology 2:155-163.

Hirschberg, J. (2001) Carotenoid biosynthesis in flowering plants. Current Opinion


in Plant Biology 4:210-218 .

Hoekema A, Hirsch PR, Hooykaas PJJ, Schilperoort RA (1983) A binary plant


vector strategy based on separation of vir- and T-region of the Agrobacterium
tumefaciens Ti-plasmid. Nature 303: 179–180.

Hohn, B. (1979) In vitro packaging of lambda and cosmid DNA. Methods Enzymol.
68:299-309.

Hood EE, Helmer GL, Fraley RT, Chilton MD. (1986) The hypervirulence of
Agrobacterium tumefaciens A281 is encoded in a region of pTiBo542 outside
of T-DNA. J Bacteriol 168: 1291–1301.

Hooykaas P.J.J. and Shilperoort R.A. (1992) Agrobacterium and plant genetic
engineering. Plant Molecular Biology 19:15-38.

Hoyt, M. A., D. M. Knight, A. Das, H. Miller, and H. Echols (1982) Control of


phage lambda development by stability and synthesis of cII protein: role of the
viral cIII and host hflA, himA and himD genes. Cell 31:565-573.

Huang S, Gilbertson LA, Adams TH, Malloy KP, Reisenbigler EK, Birr DH,
Snyder MW, Zhang Q, Luethy MH. (2004) Generation of marker-free
transgenic maize by regular two-border Agrobacterium transformation
vectors. Transgenic Res 13: 451–461.

Huang Y., Morel P., Powell B. and Kado C.I. (1990) VirA, a coregulator of Ti-
specified virulence genes, is phosphorylated in vitro. Journal of Bacteriology
172:1142-1144.

Ishida Y, Murai N, Kuraya Y, Ohta S, Saito H, Hiei Y, Komari T. (2004)


Improved co-transformation of maize with vectors carrying two separate T-
DNAs mediated by Agrobacterium tumefaciens. Plant Biotechnol 21: 57–63.

Ishida Y, Saito H, Ohta S, Hiei Y, Komari T, Kumashiro T. (1996) High efficiency


transformation of maize (Zea mays L.) mediated by Agrobacterium
tumefaciens. Nat Biotechnol 14: 745–750.

Iuchi S. (1993) Phosphorylation/dephosphorylation of the receiver module at the


conserved aspartate residue controls transphosphorylation activity of histidine

173
References

kinase in sensor protein ArcB of Escherichia coli. Journal of Biological


Chemistry 268:23972-23980.

Jayaram, M. (1994). Phosphoryl transfer if FLP recombination: a template for strand


transfer mechanisms. Trends Biotechnology. 19:78-82.

Jefferson RA. (1987) Assaying chimeric genes in plants: the GUS gene fusion
system. Plant Mol Biol Rep 5: 387–405.

Jia H, Pang Y, Chen X, Fang R (2006) Removal of the selectable marker gene from
transgenic tobacco plants by expression of Cre recombinase from a tobacco
mosaic virus vector through agroinfection. Transgenic Res 15: 375–384.

Jin S, Komari T, Gordon MP, Nester EW. (1987) Genes responsible for the
supervirulence phenotype of Agrobacterium tumefaciens A281. J Bacteriol
169: 4417–4425.

Jin S., Prusti R.K., Roitsch T., Ankenbauer R.G. and Nester E.W. (1990a) The
VirG protein of Agrobacterium tumefaciens is phosphorylated by the
autophosphorylated VirA protein and this is essential for its biological activity.
Journal of Bacteriology 172: 4945-4950.

Jin S., Song Y., Pan S. and Nester E.W. (1993) Characterisation of a virG mutation
that confers constitutive virulence gene expression in Agrobacterium
tumefaciens. Molecular Microbiology 7:555-562.

Jin, S, T Roitisch, Christie P.J. and Nester E.W. (1990b) The regulatory VirG
protein specifically binds to a cis acting regulatory sequence involved in
transcriptional activation of Agrobacterium tumefaciens virulence genes.
Journal of Bacteriology 172:531-562.

JMBM van der Vossen et al. “Development and application of an in vitro intestinal
tract model for safety evaluation of genetically modified foods” in Food
Safety Evaluation of Genetically Modified Foods as a Basis for Market
Introduction. pp 81-99. Ministry of Economic Affairs, PO Box 20101, 2500
EC, The Hague, The Netherlands.

Jones A.L., Lai E.M., Shirasu K. and Kado C.I. (1996) Vir B2 is a processed pilin-
like protein encoded by the Agobacterium tumefaciens Ti plasmid. Journal of
Bacteriology 178:5706-57112.

174
References

Jouanin L, Vilaine F, d'Enfert C, Casse-Delbart F. (1985) Localization and


restriction maps of the replication origin regions of the plasmids of
Agrobacterium rhizogenes strain A4. Mol Gen Genet 201: 370–374.

Judgement of Justice Andrew Mackay, Federal Court of Canada 29/03/2001 on the


case between Monsanto Canada Inc and Monsanto Company (Plaintiffs) and
Percy Schmeiser and Schmeiser Enterprises Ltd (Defendants) Docket No T-
1593-98. Neutral Citation: 2001 FCT 256.

Kanemoto R.H., Powell A.T., Akiyoshi D.E., Regier D.A., Kerstetter R.A., Nester
E.W., Hawes M.C. and Gordon M.P. (1989) Nucleotide sequence and
analysis of the plant-inducible locus pinF from Agrobacterium tumefaciens.
Journal of Bacteriology 171:2506-2512.

Karn, J., S. Brammer, L. Barnett, and G. Cesareni (1980) Novel bacteriophage


lambda cloning vector. Proc. Natl. Acad. Sci. USA 77:5172-5176.

Kazazian HH Jr. (2004) Mobile elements: drivers of genome evolution.


Science.;303:1626–1632. doi: 10.1126/science.1089670.

Kim, U.-J., Birren, B.W., Slepak, T., Mancino, V., Boysen, C., Kang, H.-L.,
Simon, M.I. and Shizuya, H. (1996) Construction and characterization of a
human bacterial artificial chromosome library. Genomics, 34, 213-218.

Kolomietz E, Meyn MS, Pandita A, Squire JA. (2002) The role of Alu repeat
clusters as mediators of recurrent chromosomal aberrations in tumors. Genes
Chromosomes Cancer;35:97–112. doi: 10.1002/gcc.10111.

Komari T. (1990) Transformation of cultured cells of Chenopodium quinoa by binary


vectors that carry a fragment of DNA from the virulence region of pTiBo542.
Plant Cell Rep 9: 303–306.

Komari T, Hiei Y, Saito Y, Murai N, Kumashiro T. (1996) Vectors carrying two


separate T-DNAs for co-transformation of higher plants mediated by
Agrobacterium tumefaciens and segregation of transformants free from
selection markers. Plant J 10: 165–174.

Komari T, Takakura Y, Ueki J, Kato N, Ishida Y, Hiei Y. (2006) Binary vectors


and super-binary vectors. In K Wang, ed, Methods in Molecular Biology, Vol
343: Agrobacterium Protocols, Ed 2, Vol 1. Humana Press, Totowa, NJ, pp
15–41.

175
References

Krizkova L, Hrouda M. (1998) Direct repeats of T-DNA integrated in tobacco


chromosome: characterization of junction regions. Plant J 16: 673–680.

Kuldau G.A., DeVos G., Owen J., McGaffrey G. and Zambryski P. (1990) The
virB operon of Agrobacterium tumefaciens pTiC58 encodes 11 open reading
frames. Molecular General Genetics 221:256-266.

Kuraya Y, Ohta S, Fukuda M, Hiei Y, Murai N, Hamada K, Ueki J, Imaseki H,


Komari T. (2004) Suppression of transfer of non-T-DNA "vector backbone"
sequences by multiple left border repeats in vectors for transformation of
higher plants mediated by Agrobacterium tumefaciens. Mol Breed 14: 309–
320.

Lederberg. J (1952) Cell genetics and hereditary symbiosis. Physiol. Rev. 32 (4):
403–30.

Lee SH, Oshige M, Durant ST, Rasila KK, Williamson EA, Ramsey H, Kwan L,
Nickoloff JA, Hromas R. (2005)The SET domain protein Metnase mediates
foreign DNA integration and links integration to nonhomologous end-joining
repair. Proc Natl Acad Sci USA.;102:18075–18080. doi:
10.1073/pnas.0503676102.

Lehman C.W., Trautman J.K. and Carroll D. (1994) Illegitimate recombination in


Xenopus: characterisation of end-joined junctions. Nucleic Acid Research
22:434-442.

Lessl M. and Lanka E. (1994). Common mechanisms in bacterial conjugation and


Ti-mediated T-DNA transfer to plant cells. Cell 77:321-324.

Lipps G. (editor). (2008) Plasmids: Current Research and Future Trends. Caister
Academic Press. ISBN 978-1-904455-35-6.

Liu D, Bischerour J, Siddique A, Buisine N, Bigot Y, Chalmers R. ( 2006) The


human SETMAR protein preserves most of the activities of the ancestral
Hsmar1 transposase. Mol Cell Biol.;27:1125–1132. doi: 10.1128/MCB.01899-
06.

Liu Y-G, Shirano Y, Fukaki H, Yanai Y, Tasaka M, Tabata S, Shibata D. (1999)


Complementation of plant mutants with large genomic DNA fragments by a
transformation-competent artificial chromosome vector accelerates positional
cloning. Proc Natl Acad Sci USA 96: 6535–6540.

176
References

Lodge JK, Kaniewski WK, Turner NE. (l993) Broad-spectrum virus resistance in
transgenic plants expressing pokeweed antiviral protein. Proc Natl Acad Sci U
S A;90:7089-93.

Loomis, W.D. (1974)Overcoming problems of phenolics and quinones in the


isolation of plant enzymes and organelles. Methods Enzymol., 31, 528-544.

Ma, J. K.-C., Hiatt, A., Hein, M. B., Vine, N., Wang, F., Stabila, P., Van
Dolleweerd, C., Mostov, K. and Lehner, T. ( 1995) Science, 268, 716–719.

Marra, M.A., Kucaba, T.A., Dietrich, N.J., Green, E.D., Brownstein, B., Wilson,
R.K., McDonald, K.M., Hillier, L.W., McPherson, J.D. and Waterson,
R.H. (1997) High throughput fingerprint analysis of large-insert clones.
Genome Res., 7, 1072-1084.

Mason, H. S. and Arntzen, C. J. (1995 ) Trends Biotechnol., 13, 388–392.

Matthysse A.G., Yarnall H.A. and Young N. (1996) Requirement for genes with
homology to ABC transport system for attachment and virulence of
Agrobacterium tumefaciens. Journal of Bacteriology 178:5302-5308.

McClintock, B. (1950) "The origin and behavior of mutable loci in maize. Proc Natl
Acad Sci U S A. 36 (6): 344–55.

McClintock, B. (1945) Carnegie Inst. of Wash. Year Book 44:108-112.

McClintock, B. (1946) Carnegie Inst. of Wash. Year Book 45:176-186.

McClintock, B. (1947) Carnegie Inst. Of Wash. Year Book 46:146-152.

McClintock, B. (1948) Carnegis Inst. of Wash. Year Book 47:155-169.

McClintock, B. (1951) Cold Spring Harbor Symp. Quant. Biol. 16:13-47.

Mead, D. A., E. Szczesna-Skorupa, and B. Kemper. (1985) Single stranded


DNASP6 promoter plasmids for engineering mutant RNAs and proteins:
synthesis of a "stretched" preproparathyroid hormone. Nucleic Acids Res.
13:1103-1118.

Meissner, P. S., W. P. Sisk, and M. L. Berman. (1987) Bacteriophage lambda


cloning system for the construction of directional cDNA libraries. Proc. Natl.
Acad. Sci. USA 84:4171-4175.

177
References

Miki D, Shimamoto K (2004) Simple RNAi vectors for stable and transient
suppression of gene function in rice. Plant Cell Physiol 45: 490–495.

Miller WJ, Hagemann S, Reiter E, Pinsker W. (1992) P-element homologous


sequences are tandemly repeated in the genome of Drosophila guanche. Proc
Natl Acad Sci USA.;89:4018–4022. doi: 10.1073/pnas.89.9.4018. [PubMed]

Modelska, A., Dietzschold, B., Sleysh, N., Fu, Z. F., Steplewski, K., Hooper, D. C.,
Koprowski, H. and Yusibov, V.(1997) Proc. Natl. Acad. Sci. USA, 95, 2481–
2485.

Moffat AS. (1994) Mapping the sequence of disease resistance. Science:265:1804-5.

Moore SK, Srivastava V (2006) Efficient deletion of transgenic DNA from complex
integration locus of rice mediated by Cre/lox recombination system. Crop Sci
46: 700–705.

Moullet, O., Zhang, H.-B. and Lagudah, E.S. (1999) Construction and
characterisation of a large DNA insert library from the D genome of wheat.
Theor. Appl. Genet., 99, 305-313.

Mozo, T., Dewar, K., Dunn, P., Ecker, J.R., Fischer, S., Kloska, S., Lehrach, H.,
Marra, M., Martienssen, R., Meier-Ewert, S. and Altmann, T. (1999) A
complete BAC-based physical map of the Arabidopsis thaliana genome. Nat.
Genet., 22, 271-275.

Murray, N. E. (1983) Phage lambda and molecular cloning, p. 395-432. In R. W.


Hendrix, J. W. Roberts, F. W. Stahl, and R. A. Weisberg (ed.), Lambda II. Cold
Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
Murray, N. E., and K. Murray. (1974) Manipulations of restriction targets in phage
lambda to form receptor chromosomes for DNA fragments. Nature (London)
251:476-481.

Nakamura, S., Asakawa, S., Ohmido, N., Fukui, K., Shimizu, N. and Kawasaki,
S. (1997) Construction of an 800-kb contig in the near-centromeric region of
the rice blast resistance gene Pita2 using a highly representative rice BAC
library. Mol. Gen. Genet., 254, 611-620.

Nam, Y.-W., Penmesta, R.V., Endre, G., Uribe, P., Kim, D., and Cook, D.R.
(1999) Construction of a bacterial artificial chromosome library of Medicago
truncatula and identification of clones containing ethylene-response genes.
Theor. Appl. Genet., 98, 638-646.

178
References

Neil, D.L., Villasante, A., Fisher, R.B., Vetrie, D., Cox, B. and Tyler-Smith, C.
(1990) Structural instability of human tandemly repeated DNA sequences
cloned in yeast artificial chromosome vectors. Nucleic Acids Res., 18, 1421-
1428.

Nicholas, R.B. (1991) In Agricultural Biotechnology at the Crossroads. Biological,


Social and Institutional Concerns. J.F. Macdonald (ed.), Report 3 of the
National Agricultural Biotechnology Council, Ithaca.

Nixon B.T., Ronson C.W. and Ausubel F.M. (1986) Two-component regulatory
systems responsive to environmental stimuli share strongly conserved
domains with the nitrogen assimilation regulatory genes ntrB and ntrC.
Proceedings of National Academy of Sciences of the USA 83:7850-7854.

O’Connor, M., Peifer, M. and Bender, W. (1989) Construction of large DNA


segments in Escherichia coli. Science, 244, 1307-1312.

Odell JT, Nagy F, Chua NH. (1985) Identification of DNA sequences required for
activity of the cauliflower mosaic virus 35S promoter. Nature 313: 810–812

Odell JT, Russell RH. (1994) In: Paszkowski J, editor. Homologous recombination
in plant. Dordrecth: Kluwer Academic Publishers. p 219-270.

Oger P., Kim K.S., Sackett S.L., Piper K.R. and Farrand S.K. (1998). Octopine-
type Ti plasmids code for mannopine-inducible dominant-negative allele of
TraR, the quorum-sensing activator that regulates Ti plasmid conjugal transfer.
Molecular Microbiology 27:277-288.

Okamoto S., Toyoda-Yamamoto A., Ito K., Takebe I. and Machida Y. (1991).
Localisation and orientation of the VirD4 protein of Agrobacterium
tumefaciens in cell membrane. Molecular General Genetics 228:24-32.

Okayama, H., and P. Berg (1985) Bacteriophage lambda vector for transducing a
cDNA clone library into mammalian cells. Mol. Biol. 5:1136-1142.

Okumura MS, Kado CI (1992) The region essential for efficient autonomous
replication of pSa in Escherichia coli. Mol Gen Genet 235: 55–63.

Ostertag EM, Goodier JL, Zhang Y, Kazazian HH Jr. (2003) SVA elements are
nonautonomous retrotransposons that cause disease in humans. Am J Hum
Genet;73 :1444–1451. 10.1086/380207.

179
References

Ow DW (2001) The right chemistry for marker gene removal? Nat Biotechnol 19:
115–116.

Ow DW, Wood KV, DeLuca M, de Wet JR, Helinski DR, Howell SH (1986)
Transient and stable expression of the firefly luciferase gene in plant cells and
transgenic plants. Science 234: 856–859.

Owen, M., Gandecha, A., Cockburn, B. and Whitelam, G. (1992) Biotechnology,


10, 790–794.

Palazzolo, M. J., and E. M. Meyerowitz. (1987) A family of lambda phage cDNA


cloning vectors, lambda SWAJ, allowing the amplification of RNA sequences.
Gene 52:197-206.

Pan S.Q., Charles T., Jin S., Wu Z.L. and Nester E.W. (1993) Pre-formed dimeric
state of the sensor protein VirA is involved in plant-Agrobacterium signal
transduction. Proceedings of the National Academy of Sciences of the USA
90:9939-9943.

Pang S-Z, DeBoer DL, Wan Y, Ye G, Layton JG, Neher MK, Armstrong CL, Fry
JE, Hinchee MAW, Fromm ME. (1996) An improved green fluorescent
protein gene as a vital marker in plants. Plant Physiol 112: 893–900.

Pansegrau W, Lanka E, Barth PT, Figurski DH, Guiney DG, Haas D, Helinski
DR, Schwab H, Stanisich VA, Thomas CM. (1994) Complete nucleotide
sequence of Birmingham IncP plasmids. Compilation and comparative
analysis. J Mol Biol 239: 623–663.

Parkinson J.S. (1993). Signal transduction schemes of bacteria. Cell 73:857-871.

Pen J, Verwoerd IC, van Paridon PA, et al. (1993) Phytase-containing transgenic
seeds as a novel feed additive for improved phosphorus utilization.
Biotechnology (N Y);l 1:811-4.

Peralta E.G., Ream L.W. (1985) T-DNA border sequence required for crown gall
tumorigenesis. Proceedings of the National Academy of Sciences of the USA
82:5112-5116.

Peterson, D.G., Boehm, K.S. and Stack, S.M. (1997) Isolation of milligram
quantities of DNA from tomato (Lycopersicon esculentum), a plant containing
high levels of polyphenolic compounds. Plant Mol. Biol. Reptr., 15, 148-153.

180
References

Peterson, D.G., Lapitan, N.L.V. and Stack, S.M. (1999) Localization of single- and
low-copy sequences on tomato synaptonemal complex spreads using
fluorescence in situ hybridization (FISH). Genetics, 152, 427-439.

Petterson O. (1993) In The Pesticide Question: Environment, Economics and Ethics;


D. Pimentel and H. Lehman (eds.), Chapman and Hall, New York.

Piers K.L., Heath J.D., Liang X., Stephens K.M. and Nester E.W. (1996)
Agrobacterium tumefaciens-mediated transformation of yeast. Proceedings of
the National Academy of Sciences of the USA 93:1613-1618.

Podevin N, Buck SD, Wilde CD, Depicker A. (2006) Insights into recognition of the
T-DNA border repeats as termination sites for T-strand synthesis by
Agrobacterium tumefaciens. Transgenic Res 15: 557–571.

Pohlman R.F., Genetti H.D. and Winans S.C. (1994) Common ancestry between
IncN conjugal transfer genes and macromolecular export systems of plant and
animal pathogens. Molecular Microbiology 14:655-668.

Ptashne, M. (1971) Repressor and its action, In A. D. Hershey (ed.), Bacteriophage


lambda. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. p. 221-
237.

Puchta H. (1998) Repair of genomic double-strand breaks in somatic cells by one-


side invasion of homologous sequences. Plant Journal 13:331-339.

Raleigh, E. A., N. E. Murray, H. Revel, R. M. Blumenthal, D. Westaway, A. D.


Reith, P. W. J. Rigby, J. Elhai, and D. Hanahan. (1988) McrA and McrB
restriction phenotypes of some of E. coli strains and implications for gene
cloning. Nucleic Acids Res. 16:1563-1575.

Rambach, A., and P. Toillais. (1974) Bacteriophage lambda having EcoRI


endonuclease site only in the non-essential region of the genome. Proc. Natl.
Acad. Sci. USA 71:3927 3930.

Rashkova S., Spudlich G.M. and Christie P.J. (1997) Characterisation of


membrane and protein interaction determinants of the Agrobacterium
tumefaciens VirB11 ATPase. Journal of Bacteriology 179:583-591.

Robertson HM, Zumpano KL. (1997) Molecular evolution of an ancient mariner


transposon, Hsmar1, in the human genome. Gene. 205:203–217. doi:
10.1016/S0378-1119(97)00472-1.

181
References

Rogowsky P.M., Powell B.S., Shirasu K., Lim T.S., Morel P., Zyprian E.M., Steck
T.R. and Kado C.I. (1990) Molecular characterisation of the vir regulon of
Agrobacterium tumefaciens: complete nucleotide sequence and gene
organisation of the 28.63 kbp regulon cloned as single unit. Plasmid 23:85-
106.

Rosenberg, S. M. (1987) Improved in vitro packaging of lambda DNA. Methods


Enzymol. 153:95-103.

Rosenberg, S. M., M. M. Stahl, J. Kobayashi, and F. W. Stahl. (1985) Improved in


vitro packaging of coliphage lambda DNA: a one-strain system free from
endogenous phage. Gene 38:165-175.

Rossi L., Hohn B. and Tinland B. (1993) Vir D2 protein carries nuclear localisation
signals important to transfer of T-DNA to plants. Molecular General Genetics
239:345-353.

Sambrook, J., E. F. Fritsch, and T. Maniatis (1989) Molecular cloning: a


laboratory manual. vol. I. Cold Spring Harbor Laboratory, Cold Spring
Harbor, N.Y.

Sambrook J, Russell DW. (2001) Molecular Cloning: A Laboratory Manual, Ed 3.


Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY .

Schaub, P. (2005) Why Is Golden Rice Golden (Yellow) Instead of Red? Plant
Physiology 138:441–450.

Seed, B. (1983) Purification of genomic sequences from bacteriophage libraries by


recombination and selection in vivo. Nucleic Acids Res. 11:2427-2445.

Seligman L. and Manoil C. (1994) An amphipathic sequence determinant of


membrane protein topology. Journal of Biological Chemistry 269:19888-
19896.

Sen SK, Han K, Wang J, Lee J, Wang H, Callinan PA, Dyer M, Cordaux R,
Liang P, Batzer MA. (2006) Human genomic deletions mediated by
recombination between Alu elements. Am J Hum Genet. 79:41–53. doi:
10.1086/504600.

Shimoda N., Toyoda-Yamamoto A., Aoki S. and Machida Y. (1990b) Genetic


evidence for an interaction between the VirA sensor protein and the ChvE

182
References

sugar binding protein of Agrobacterium tumefaciens. Journal of Biological


Chemistry 268:26552-26558.

Shimoda N., Toyoda-Yamamoto A., Nagamine J., Usami S., Katayama M.,
Sakagami Y. and Machida Y. (1990a) Control of expression of
Agrobacterium tumefaciens genes by synergistic actions of phenolic signal
molecules and monosaccharides. Proceedings of the National Academy of
Sciences of the USA 87:6684-6688.

Shirasu K. and Kado C.I. (1993a) The virB operon of the Agrobacterium
tumefaciens virulence regulon has sequence similarities to B,C, and D open
reading frames downstream of the Pertussis toxin-operon and to the DNA
transfer-operons of broad-host-range conjugative plasmids. Nucleic Acid
Research 21:353-354.

Shirasu K. and Kado C.I. (1993b) Membrane location of the Ti plasmid VirB
proteins involved in the biosynthesis of a pilin-like conjugative structure on
Agrobacterium tumefaciens. FEMS Microbiology Letters 111:287-294.

Shirasu K., Koukolikova-Nicola Z., Hohn B. and Kado C.I. (1994) An inner-
membrane-associated virulence protein essential for T-DNA transfer from
Agrobacterium tumefacien to plants exhibits ATPase activity and similarities
to conjugative transfer genes. Molecular Microbiology 11:581-588.

Shirasu K., Morel P. and Kado C.I. (1990) Characterisation of the virB operon of
an Agrobacterium tumefaciens Ti plasmid: nucleotide sequence and protein
analysis. Molecular Microbiology 4:1153-1163.

Shizuya, H., Birren, B., Kim, U.-J., Mancino, V., Slepak, T., Tachiiri, Y. and
Simon, M. (1992) Cloning and stable maintenance of 300-kilobase-pair
fragments of human DNA in Escherichia coli using an F-factor-based vector.
Proc. Natl. Acad. Sci. USA, 89, 8794-8797.

Shurvinton C.E., Hodges L. and Ream W. (1992) A nuclear localisation signal and
the C-terminal omega sequence in the Agrobacterium tumefaciens VirD2
endonuclease are important for tumour formation. Proceedings of the National
Academy of Sciences of the USA 89:11837-11841.

Simpson, EC et al. (1999) Gene flow in genetically modified herbicide tolerant


oilseed rape (Brassica napus) in the UK. Gene Flow and Agriculture:

183
References

Relevance for Transgenic Crops. 1999 BCC Symposium Proceedings No. 72


pp 75-81.

Spudich G.M., Fernandez D., Zhou X.R. and Christie P.J. (1996) Intermolecular
disulfide bonds stabilise VirB7 homodimmers and VirB7/VirB9 heterodimmers
during biogenesis of the Agrobacterium tumefaciens T-complex transport
apparatus. Proceedings of the National Academy of Sciences of the USA
93:7512-7517.

Starlinger, P. Plasmid 3, 241 (1980); and Calos, H. and Miller, J. H., Cell 20, 579.

Stephens K.M., Roush C. and Nester E.W. (1995) Agrobacterium tumefaciens


VirB11 protein requires a consensus nucleotide-binding site for function in
virulence. Journal of Bacteriology 177:27-36.

Sternberg, N. (1990) Bacteriophage P1 cloning system for the isolation,


amplification, and recovery of DNA fragments as large as 100 kilobase pairs.
Proc. Natl. Acad. Sci. USA87:103-107.

Sternberg, N., D. Tiemeier, and L. Enquist. (1977) In vitro packaging of Dam


vector containing EcoRI DNA fragments of Escherichia coli and phage P1.
Gene 1:255-280.

Sundberg C., Meek L., Carroll K., Das A. and Ream W. (1996) VirE1 protein
mediates export of the single-stranded DNA binding protein VirE2 from
Agrobacterium tumefaciens into plant cells. Journal of Bacteriology 178:1207-
1212.

Surgeoner, G.A. and Roberts, W. (1993) In The Pesticide Question: Environment,


Economics and Ethics; D. Pimentel and H. Lehman (eds.), Chapman and Hall,
New York.

Tacket, C. O., Mason, H. S., Losonsky, G., Clements, J. D., Levine, M. M. and
Arntzen, C. J. (1998) Nature Med., 4, 607–609.

Tavladoraki, P., Benvenuto, E., Trinca, S., De Martinis, D., Cattaneo, A. and
Galeffi, P. (1993) Nature, 366, 469–472.

184
References

Thomas, M., J. R. Cameron, and R. W. Davis. (1974) Viable molecular hybrids of


bacteriophage lambda and eukaryotic DNA. Proc. Natl. Acad. Sci. USA
71:4579-4583.

Thomashow M.F., Karlinsey J.E., Marks J.R. and Hurlbert R.E. (1987)
Identification of a new virulence locus in Agrobacterium tumefaciens that
affects polysaccharide composition and plant attachment. Journal of
Bacteriology 169:3209-3216.

Thompson D.V., Melchers L.S., Idler K.B., Schilperoort R.A. and Hooykaas
P.J.J. (1988) Analysis of the complete nucleotide sequence of the
Agrobacterium tumefaciens virB operon. Nucleic Acids Research 16:4621-
4636.

Thompson, CE et al. (1999) Regional patterns of gene flow and its consequence for
GM oilseed rape. Gene Flow and Agriculture: Relevance for Transgenic
Crops. 1999 BCC Symposium Proceedings No 72 pp 95-100

Tinland B., Schoumacher F., Gloeckler V., Bravo Angel A.M. and Hohn B. (1995)
The Agrobacterium tumefaciens virulence D2 protein is responsible for
precise integration of T-DNA into the plant genome. EMBO Journal 14:3585-
3595.

Tomkins, J.P., Mahalingham, R., Miller-Smith, H., Goicoechea, J.L., Knapp,


H.T. and Wing, R.A. (1999a) A soybean bacterial artificial chromosome
library for PI 437654 and the identification of clones associated with cyst
nematode resistance. Plant Mol. Biol., 41, 25-32.

Toro N., Datta A., Carmi O.A., Young C., Prusti R.K. and Nester E.W. (1989) The
Agrobacterium tumefaciens virC1 gene products binds to overdrive, a T-DNA
transfer enhancer. Journal of Bacteriology 171:6845-6849.

Tricoli DM, Camey K!, Quemada H, et al. (l992) Transgenic squash plants exhibit
protein mediated protection under field conditions. J Cell Biochem Suppl
.l6:222(abstr).

Turk S.C.H.J., van Lange R.P., Sonneveld E. and Hooykaas P.J.J. (1993) The
chimeric VirA-Tar receptor protein is locked into highly responsive state.
Journal of Bacteriology 175:5706-5709.

185
References

Turner NE, O’Connell KM. Nelson RS, et al. (1987) Expression of alfalfa mosaic
virus coat protein gene confers cross-protection in transgemc tobacco and
tomato plants. EMBO J;6: I 181-8.

Van Haaren M.J.J., Pronk J.T., Schilperoort R.A. and Hooykaas P.J.J. (1987)
Functional analysis of the Agrobacterium tumefaciens octopine Ti-plasmid left
and right T-Region border fragments. Plant Molecular Biology 8:95-104.

Van Weizenbeck, P. M. G. F., T. J. M. Hulsebos, and J. G. G. Schoenmakers.


(1980) Nucleotide sequence of the filamentous bacteriophage M13 DNA
genome: comparison with phage fd. Gene 11:129-138.

Venter, J.C., Smith, H.O. and Hood, L. (1996) A new strategy for genome
sequencing. Nature, 381,364-366.

Vinatzer, B.A., Zhang, H.-B. and Sansavini, S. (1998) Construction and


characterization of a bacterial artificial chromosome library of apple. Theor.
Appl. Genet., 97, 1183-1190.

Vitamin A Global Initiative (1997). A Strategy for Acceleration of Progress in


Combating Vitamin A Deficiency.

Volff JN. (2006) Turning junk into gold: domestication of transposable elements and
the creation of new genes in eukaryotes. Bioessays.;28:913–922. doi:
10.1002/bies.20452.

Wang Y, Chen B, Hu Y, Li J, Lin Z. (2005) Inducible excision of selectable marker


gene from transgenic plants by the Cre/lox site-specific recombination system.
Transgenic Res 14: 605–614.

Ward J.E., Akiyoshi D.E., Regier D., Datta A., Gordon N.P. and Nester E.W.
(1988) Characterisation of the virB operon from an Agrobacterium
tumefaciens Ti plasmid. Journal of Biological Chemistry 265:4768.

Weigle, J. (1968) Studies on head-tail union in bacteriophage lambda. J. Mol. Biol.


33:483-489.

Whatley M.H. and Spress L.D. (1977) Role of bacterial lipopolysaccharide in


attachment of Agrobacterium to moss. Plant Physiology 60:765-766.

Willetts, N. and Skurray, R. (1987) Structure and function of the F factor and
mechanism of conjugation. In Neidhardt, F.C. (ed.), Escherichia coli and

186
References

Salmonella typhimurium: Cellular and Molecular Biology. American Society


for Microbiology, Washington, D.C., Vol. 2, pp. 1110-1133.

Wilson, PJ, Boatman, ND and Edwards PJ. (1990) Strategies for the conservation
of endangered arable weeds in Great Britain. Proceedings of the European
Weed Research Society Symposium 1990: Integrated Weed Management in
Cereals pp 93-100.

Winans S.C. (1992) Two-way chemical signalling in Agrobacterium-plant


interactions. Microbiology Reviews 56:12-31.

Woo, S.-S., Jiang, J., Gill, B.S., Paterson, A.H. and Wing, R.A. (1994)
Construction and characterization of a bacterial artificial chromosome library
of Sorghum bicolor. Nucleic Acids Res., 22, 4922-4931.

WVindle, B. E. (1986) Phage lambda and plasmid vectors with multiple cloning sites
and lacZ-a-complementation. Gene 45: 95-99.

Yadav NS, Vanderleyden J, Bennett DR, Barnes WM, Chilton MD. (1982) Short
direct repeats flank the T-DNA on a nopaline Ti plasmid. Proc Natl Acad Sci
USA 79: 6322–6326.

Yang, D., Parco, A., Nandi, S., Subudhi, P., Zhu, Y., Wang, G. and Huang, N.
(1997) Construction of a bacterial artificial chromosome (BAC) library and
identification of overlapping BAC clones with chromosome 4-specific RFLP
markers in rice. Theor. Appl. Genet., 95, 1147-1154.

Yanisch-Perron, C., Vieira, J. and Messing, J. (1985) Improved M13 phage cloning
vectors and host strains: nucleotide sequences of the M13mp18 and pUC19
vectors, Gene 33, 103-119.

Young, R. A., and R. W. Davis. (1983) Efficient isolation of genes by using antibody
probes. Proc. Natl. Acad. Sci. USA 80:1194-1198.

Young, R. A., and R. W. Davis. (1985) Immunoscreening of recombinant DNA


expression librariesIn J. K. Setlow and A. Hallaender (ed.), Genetic
engineering, vol.7.IRL Press, Oxford 29-41.

Zagursky, R. J., and M. L. Berman. (1984) Cloning vectors that yield high levels of
single-stranded DNA for rapid DNA sequencing. Gene 27:183-191.

187
References

Zeitlin, L., Olmsted, S. S., Moench, T. R., Co, M. S., Martinell, B. J., Paradkar,
V. M., Russell, D. R., Queen, C., Cone, R. A. and Whaley, K. J.( 1998)
Nature Biotechnol., 16, 1361–1364.

Zhang W, McElroy D, Wu R. (1991) Analysis of rice Act1 5' region activity in


transgenic rice plants. Plant Cell 3: 1155–1165.

Zhang, H.B., Choi, S., Woo, S.-S., Li, Z. and Wing, R.A. (1996) Construction and
characterization of two rice bacterial artificial chromosome libraries from the
parents of a permanent recombinant inbred mapping population. Mol.
Breeding, 2, 11-24.

Zhao ZY, Gu W, Cai T, Tagliani L, Hondred D, Bond D, Shroeder S, Rudert M,


Pierce D. (2001) High throughput genetic transformation mediated by
Agrobacterium tumefaciens in maize. Mol Breed 8: 323–333.

Zhou X.R. and Christie P.J. (1997) Suppression of mutant phenotypes of the
Agrobacterium tumefaciens VcirB11 ATPase by overproduction of VirB
proteins. Journal of Bacteriology 179:5835-5842.

Zupan J.R. and Zambryski P.C. (1995) Transfer of T-DNA from Agrobacterium to
the plant cell. Plant Physiology 107:1041.1047.

Zupan J.R., Citovsky V. and Zambryski P.C. (1996) Agrobacterium VirE2 protein
mediates nuclear uptake of single-stranded DNA in plant cells. Proceedings of
the National Academy of Sciences of the USA 93:2392-2397.

188

You might also like