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aureus
morphology
virulence factors
Dse, prominent S/S gastroenteritis, TSS, SSSS, food poisoning, impetigo, cutaneous infections, pneumonia, bone and joint infections artificial heart valves, prosthetic joints (THR), CNS shunts infections UTI in sexually active females
MOT
lab methods
DOC
prevention/control
remarks
g(+), grapelike
coagulase(+), mannitol (+), penicillin, cloxacillin, nafcillin, novobiocin S, hemolytic (BAP), vancomycin grows in 6.5-10% NaCl novobiocin S novobiocin R antibiotics: aminoglycosides, etc novobiocin
yellow pigment
g (+) g (+)
a. S.pyogenes
M Protein, hyaluronic acid acute glomerulonephritis (M12 strain), capsule, Streptolysin C and S; Scarlet fever (exotoxins A-C), pharyngitis, hemolysin, cytolysin, pyoderma/impetigo, necrotizing spreading factors fascites/cellulitis, TS-like syndrome, (streptokinase, DNAse, pneumonia, Rheumatic fever hyaluronidase) capsule, cAMP factor, hemolysin neonatal septicemia, meningitis
penicillin injection
Group A streptococcus
b. S. agalactiae
same
Group B streptococcus Predisposing factors: influenza or measles, COPD, CHF, alcoholism, asplenia; " rusty sputum" normal flora of oropharynx group D streptococci
c. S. pneumoniae
-hemolytic, Optochin S,
Penicillin G
pneumovaccine
d. Viridans streptococci
dental caries, infective endocarditis dextran (biofilm), growth in (prosthetic valves, dental work, poor oral vegetation hygiene) SBE (elderly), urinary and biliary tract infections colon, urethra, female genital tract-reservoir
-hemolytic, bile and Optochin R bile esculin hydrolysis in 40 % bile, 6.5% NaCl, PYR (+)
e. Enterococcus III. NEISSERIACEAE Pili, POR, OPA, RMP, Transferrin-binding protein, g (-) diplococci, non motile, lactoferrin-binding protein, no spores Hgb-binding protin, Lipooligosaccharide, IgA protease, -lactamase
a. N. gonorrhea
genital gonorrhea, rectal infection, pharyngeal infection, meningitis and conjunctivitis, opthalmia neonatorum, PID, disseminated gonococcal infection
catalase (+), oxidase (+), fastidious close personal contact: (enriched medium with 5-10% CEFTRIAXONE; add sexual contact, newborns CO2), poor in BAP, MOC: Doxycycline for concomitant from birth canal of chocolate agar, selective media: Chlamydia infection infected mother Thayer Martin+CAP +Vancomycin, Colistin, Nystatin gram stain smear (blood, CSF, petecial skin lesion, nasopharyngeal swab-carrier); culture: BAP∩ oxidase (+), CHO utilization using CTA (g,m); capsular polysaccharide detection assacharolytic
b. N. meningitides
meningitis, septicemia (meningococcemia), WaterhouseFriederichsen syndrome, DIC, milder, chronic septicemia, pneumonia, arthritis, urethritis bronchitis, pneumonia, sinusitis, otits media, conjunctivitis
respiratory droplets
c. Moraxella cattarhalis
g (-)
normal flora
MOT
lab methods OXIDASE (-) PRIMARY ISOLATION: EMB, MAC, DCA; SELECTIVE MEDIA: HEKTOEN ENTERIC AGAR, XLD, SSA
DOC
prevention/control
A. Opportunistic group 1. Klebsiella a. K. pneumoniae b. K. oxytoca c. K. ozaenae d. K. rhinoscleromatis encapsulated, non motile (Friedlander's bacillus) capsule
lobar pneumonia, extensive necrotizing consolidation of the lungs, "currant jelly" sputum same as K. Pneumoniae chronic atrophic rhinitis granulumatous disease of the nose does not grow in artificial culture media, Giemsa or Wright stain (125 bacteria per mononuclear cell) previously Calymmatobacterium granulomatis formerly Aerobacter S. Marcescens prodigiosin (red pigment) Proteus, Morganella, Providencia most common species formerly BethesdaBallerup group most abundant aerobic flora of colon; index for fecal pollution of water small intestine
e. K. granulomatis
infects any tissue, commonly UTI major entities in nosocomial infections UTI UTI char. By alkalinization of urine causing urinary calculi, damage to renal epithelial cells urinary tract, neonatal infections UTI, uncomplicated cystitis, pyelonephritis, neonatal meningitis, nosocomial infections, most common cause of g (-) sepsis infant diarrhea, voomiting, nonbloody stools urease (+)
hemolysin, P fimbriae, capsular, adhesins plasmid-mediated A/E histopathology w/ disruption of normal microvillus plasmid-mediated, heat stable and/or heat labile enterotoxins that stimulate hypersecretion of fluids and electrolytes cytotoxic Shiga toxins (Stx-1, Stx-2), which disrupts protein synthesis
a. EPEC
b. ETEC
small intestine
c. EHEC
large intestine
morphology
virulence factors plasmid-mediated invasion and destruction of epithelial cells lining colon "stacked bricks"
Dse, prominent S/S watery diarrhea may progress to dysentery with scant, bloody stools infant diarrhea, traveler's diarrhea
lab methods
DOC
prevention/control
remarks
2. SHIGELLA
blood and mucus in stool; spx: rectal swab; NLF; TSI: K/A, (-)gas () H2S; confirmed by serotyping by slide agglutination
usually no bacteremia; very low infective dose: 100 bacilli most severe disease S. Sonnei- most common in industrial world S. Flexneri - most common in
a. S. dysenteriae
b. Other Shigella
3. Salmonella enterica
fecal-oral
blood/bone marrow culture (1st &2nd wk); stool or urine (after 2nd wk); S. Typhi - NLF; TSI: K/A; no gas; with H2s (small); Widal test; Typhidot cold enrichment culture
CEFTRIAXONE or CIPROFLOXACIN
vaccine (50-80% typhi and paratyphi: protection): IM (Vi human source only; polysaccharide capsule), chronic carrier state: oral (live attenuated) gallbladder
1. V. cholera
cholera toxin; toxin coDOXYCYCLINE/TETRACYCLINE regulated pilus; accesory direct contact; ingestion oxidase (+); 0/129 S; Alkaline cholera (01 and 0139); classical and el tor; : adults; Fuazolidine: cholera enterotoxin; zonnula of contaminated food or peptone broth (ph9), TCBS-yellow rice-water stool pregnant; Trimethoprimoccludens toxin; Colonization water; flies colonies sulfamethoxazole: children factor; neuraminidase ingestion of contaminated TCBS : green colonies; Oxidase (+) seafood on BAP TCBS: blue-green; sucrose (-) TETRACYCLINE, ciprofloxacin
2. V. parahaemolyyticus
unable to oxidize or ferment carbohydrates; Skirrow's, Butzler's media, Campy-BAP- colorless or gray; incubated with reduced oxygen, increased CO2; oxidase (+), catalase (+)
high dose required for infection; microaerophilic, thermophilic; humans are primary reservoir
2. C. fetus
S protein
GI tract
opportunistic
morphology
virulence factors
MOT
lab methods
DOC
prevention/control
remarks
urease; HSpB; Acid-inhibory protein, flagella, adhesins, mucinase, phospholipase, gastritis; peptic ulcers; gastric CA; MALT; Bsuperoxide dismutase, cell lymphomas catalase, vacuolating cytotoxin
fecal-oral
Oxidase (+); urease (+); catalase (+) biopsy;urea breath test; serology;Skirrow's &CAP grows optimally at ph 6-7
microaerophilic
VIII. AEROMONAS
g (-) facultative anaerobic rod g (-) rod with polar flagellum g(+), smallest, cell wall free; pleomorphic (sterol) share similar antigen with S. Sonnei glycolipids, P1 adhesin protein; H202
contaminated food or water(ubiquitous in fresh and brackish water) contaminated freshwater fish and animals oxidase (+), DNAse (+)
IX. Plesiomonas shigelloides X. MYCOPLASMA 1. M. pneumoniae 2. M. hominis 3. M. genitalium 4. Ureaplasma urealyticum XI. CHLAMYDIAE
diarrhea
PPLO-"fried egg appearance" pneumonia, joint infection; salpingitis and tubo-ovarian abscess; post partum fever acute and chronic non-gonoccocal urethritis non-gonococcal urethritis in men; lung dse in low birth weight infants; probably infertility blood-streaked sputum with consolidation on CXR TETRACYCLINE &ERYTHROMYCIN
requires 10% urea for growth obligate intracellular parasites or "energy parasites" culture with HeLa229. McCoy, BHK21, Buffalo GM kidney cells; cytology (iodine, IF); Ag detection tetracycline, macrolides, sulfisoxazole
g(-) coccobacilli intracellular replication; prevents lysosomephagosome fusion ocular trachoma, urogenital disease, infant pneumonia, LGV; adult inclusion conjunctivitis; urogenital infections psittacosis (parrot fever)/ornithosis; atypical pneumonia, CNS, GI tract symptoms bronchitis, atypical pneumonia, sinusitis
1. C. trachomatis
2. C. psittaci
serology
3. C. pneumoniae XII. PARVOBACTERIA 1. Haemophilus Polysaccharide capsule (Bpolyribitol phosphate; A, C, D, F - techoic acid; Epolysaccharide), IgA protease
respiratory droplets
TWAR agent
a. H. influenzae
g(-), capsule;
cefotaxime or ceftriaxone
vaccine: active(polyribitol capsule conjugated to protein); passive: Ig; Rifampin to reduce oropharynx colonization
fastidious
b. H. aegypticus c. H. ducreyi
indole fermentation (-), xylose fermenter DNA probe/ culture; X (+), V(-)
Koch-Weeks Bacillus
virulence factors
MOT
lab methods
DOC
prevention/control
a. B. pertussis
Filamentous hemagglutinin, Pertussis toxin, Toxins, Adenylate cyclase toxin, tracheal cytotoxin silent copy of pertussis toxin gene small, g(-) bacilli small g(-) rods small g(-), encapsulated rods g (-) small pleomorpic rods endotoxin, capsule
respiratory droplets
Regan-Lowe, Bordet-Gengou (spx saline nasal wash, direct cough plates, nasopharyngeal cultures); blood count, DFA, PCR and serological test
fastidious
similar to whooping cough Chronic Respiratory Tract Infection reservoir: RT of canines bipolar staining wound infection leading to cellulitis with lymphadenitis animal bites; particularly from cat bites rarely cultured penicillin G; amoxicillin/clavulanate for cat bites amoxicillin/ clavulanate for prophylaxis facultative intracellular ulceroglandular disease, pneumonia, typhoidal tularemia tick bites, traumatic implantation while serodiagnosis (culture is skinning rabbits, aerosols, hazardous) ingestion unpasteurized dairy catalase (+), oxidase (+), serology, products, direct contact culture is hazardous with infected animal wild rodents flea bite (sylvatic pague), respiratory droplets oxidase (-), coagulase (+), culture is hazardous, serodiagnosis or immune fluorescence streptomycin; gentamicin/tetracycline tetracyclin+gentamicin , ampicillin streptomycin + tetracycline(quarantine for 72 hrs) live, attenuated vaccines for high-risk; gloves vaccinate animals, pasteurize milk, esp. Goat milk animal control, killed vaccine localizes in reticuloendothelial cells zoonotic, facultative intracellular, aerobic facultative intracellular ; safety pin appearance facultative anaerobic
a. F. tularensis
5. Brucella
g (-) rods
endotoxin, coagulase, endotoxin, V & W antigens, envelope antigen (F1) inhibits phagocytosis
6. Yersinia pestis
XIII. GRAM (+) BACILLI SPOREFORMERS 1. Clostridium respiratory support polyvalent antitoxin(ABE)(adult), proper canning, heating, hyperimmune human serum, no honey during 1st yr (infant), amoxicillin+antitoxin, debridement(wound) debridement, clindamycin extensive debridement and penicillin, hyperbaric of wound plus + chamber, supportive for food penicillin poisoning hyperimmune human globulin (TIG) + metronidazole or penicillin; spasmolytic drugs (diazepam)
a. C. botulinum
g (+) bacilli w/ subterminal spores, Botulinum toxin (A-B spores, motile, neurotoxin)
obligate anaerobes
b. C. perfringens
c. C. tetani
terminal spores
tetanospasmin
contamination with soil/ feces of horses and other animals through puncture wounds/trauma
clinical
morphology
virulence factors
lab methods
DOC
prevention/control
d. C. difficile
toxin A, toxin B
metronidazole, vancomycin toxins (stools), endoscopic exam (use only when no other drug is available), D/C antibiotics
2. Bacillus a. B. anthracis capsule, anthrax toxin (PA, LF, EF) spores, emetic toxin, diarrheal toxin virulence factors cutaneous anthrax, pulmonary (Woolsorter's) anthrax food poisoning Dse, prominent S/S MOT lab methods DOC prevention/control remarks contact with infected animals/inhalation of spores from animal hair and wool ciprofloxacin, doxycycline vaccine
b. B. cereus Genus and species morphology XIV. GRAM(+) NONSPOREFORMERS 1. Listeria monocytogenes g(+), nonspore-forming rods, tumbling motility
listeriosis, neonatal disease, septicemia foodborne, transplacental, -hemolytic on BA, cold growth and mengitis contact during delivery actinomycosis (lumpy jaw, pelvic, thoracic, abdominal disease, solitary brain abscess)
ampicillin, + gentamicin (for immunocompromised) ampicillin or penicillin G and surgical drainage sulfonamide or trimethoprim/sulfemethoxaz ole Penicillin G
facultative intracellular,
2. Actinomyces israelii
endogenous airborne or traumatic implantation direct inoculationat site of catalase (-), oxidase (-), indole (-), cut /abrasion H2S on TSI
3. Nocardia asteroides 4. Erysipelothrix rhusiopathe XV. RICKETTSIAE 1. R. ricketsii 2. R. akari 3. R. prowazekii 4. R. Typhi 5. R. tsutsugamushi 6. Coxiella burnetii 7. Erlichia chafeensis XVI. PSEUDOMONADS
g(+) filaments breaking up no toxins or virulence factors Nocardiosis (cavitary bronchopulmonary, into rods, partially acid known cutaneous/subcutaneous) fast g(+) bacilli Erysipeloid/Sea Finger/Whale finger
aerobic
obligate intracellular bacteria OX-2 & OX-19 OX-19 OX-19 (V) OX-K Rocky Mountain Spotted Fevers rickettsialpox endemic typhus endemic typhus scrub typhus Q fever Erlichiosis ticks from dogs and rodents mites from mice lice from human fleas from rodents mites from rodents cattle, sheep, goats ticks (Ixodes/lonestar) from ticks/deer cell culture, Weil-Felix test, doxycycline/tetracycline
Weil-Felix (-)
doxycycline, erythromycin
1. P. aeruginosa
g (-) rod
endotoxin, exotoxin A ADP, hot tub follliculitis, eye ulcer, cellulitis, capsule/slime layer, septicemia, pneumonia, ecthyma microcolonies gangrenosum, UTI, recurrent pneumonias
pasteurization or disinfection of water related equipment, drug resistance is very hand washing, prompt common removal of catheters; no flowers or vegetable sin burn unit
2. Burkholderia pseudomallei
mucoid and smooth to rough and wrinkled colonies, pigments: cream to orange, oxidizes glucose, lactose and other CHO
none
grows at 42C
morphology small, nonmotile, nonpigmented, g(-) bacillus slow growing g(-) free living g(-) rod
virulence factors
remarks
hospital-acquired infections
TMP-SMZ
6. Acinetobacter sp
oxidase (-)
resembles Neisseria on smear isolated from respirators, nebulizers ans renal dialysis
7. Alcaligenes sp.
g (-) rods with peritrichous flagella, motile small, fastidious capnophilic, g (-)
nosocomial infections
oxidase (+) catalase (+) indole (-), urease (-), sweet odor resembling green apples on culture media human bites oxidase (+) oxidase (+) ampicillin, +sulbactam penicillin, ampicillins and erythromycin
K. Kingae
1. C. diptheriae
g (+) rods, aerobic, nonspore forming, non motile, K antigens (heat labile), O "club-shaped appearance", antigens (heat stable), diptheria (whooping cough), wound/skin metachromatic granules, diptheria toxin (Fragment A, diptheria palisades or chinese Fragment B) characters(pleomorphic), V or L shapes in tellurite
culture: BAP, Loeffler slant, Tellurite plate, Elek plate test, Schick test
XVIII. MYCOBACTERIA first line drugs: Rifampin (R), Isoniazid, (H), Pyrazinamide catalase (-) at 68C, catalase (+) at (Z), Ethambutol (E), cannot be decolorized body temp, media: Middlebrook respiratory droplets and Streptomycin (S); second line Bacille-Calmette-Guerin by alcohol -weakly g 7H10 & 7H11, Lowenstein-Jensen, droplet nuclei drugs: Kanamycin, (BCG) (+);NaLc - digestant, Middlebrook 7H9 and 7H12, Ethionamide, Capreomycin, NaOH-decontaminate BACTEC, PPD skin test, PCR Cycloserine, Ofloxacin, Ciprofloxacin
1. M. tuberculosis
sulfatides/sulfolipids, cord aerobic, slow growing, acid factor (serpentine formation fast (+) in vitro), proteins and polysaccharides
Disseminated, pulmonary; very common in AIDS patients; occurs in other immunosuppressed patients, bacteremia, organ dysfunction pulmonary and systemic disease indistinguishable from tuberculosis, in patients with impaired immune responses
opportunistic
3. M. kansasii
photochromogen
morphology
virulence factors
MOT
lab methods
DOC
prevention/control
remarks
4. M. scrofulaceum
schotochromogen
occasionally found in chronic cervical lymphadenitis in children, water and as a saprophyte other granulomatous disease (rare) in adults with chronic lung disease superficial skin lesions ( "swimming pool granulomas") superficial and systemic disease occur in water
Surgical excision of resistance to antituberculosis involved cervical lymph drugs nodes tetracyclines, rifampin, and ethambutol amikacin, doxycycline, cefoxitin, erythromycin, or rifampin. punch biopsy or nasal scrapings, acid fast stains, lepromin test, NO CULTURES Dapsone and Rifampin + clofazamine (lepromatous) Surgical excision
grow best at low temperature (31 C) grow rapidly (36 days) in culture, no pigment acid fast, obligate intracellular, grows best below body temp
7. M. leprae
dapsone
XIX. SPIROCHETES 1. Treponema thin, helical g (-) bacteria, actively motile (endoflagella), visible on silver impregnation method outer membrane protein, hyaluronidase, fibronectin coating, sexual, infected birth canal, transfusion with contaminated blood
cannot be cultured in vitro microscopy: darkfield, direct fluorescent, antibody staining, Serology: Non treponemal (VDRL, RPR), Trponemal test ( FTA-ABS, MHA-TP) Penicillin, Tetracycline, erythromycin, Chloramphenicol
highly infectious skin lesions (BEJEL), oral person to person by use of lesions (rarely observed); late lesions: contaminated eating gummas of skin, bone and nasopharynx utensils ulcerating papule, usually on the arms or by person-to-person legs (YAWS), Scar formation of skin contact in children under lesions and bone destruction are common age 15, (PINTA) primary lesion: nonulcerating papule on exposed areas. later, flat, hyperpigmented lesions appear on the skin; depigmentation and hyperkeratosis take place years afterward
Penicillin
c. T. pallidum spp.pertenue
darkfield microscopy of spirochetes in skin lesions, (+) serologic test for syphilis late in the course of infection
2. Borellia burgdoferi
g (-) rods with periplasmic cylinder in outer envelope responsible for twisting motility, microaerophilic
Giemsa/ Wright stain of blood, culture, serology, ELISA, Western Blot darkfield microscopy, Direct Fluorescent Ab, Culture: Fletcher's. EMJH, Tween-80 albumin
3. Leptospira interrogans