Professional Documents
Culture Documents
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INTRODUCTION
1.1 Background
According to Avé (1977), the sago palm was one of the first plants used by man in
South-east Asia and Oceania. Traditionally, the trunk of the sago palm was used to
obtain starch as a staple food for humans (Flach, 1984). The renewable raw material,
starch of sago palm is tasteless and is usually flavored with other foodstuffs.
The sago palm, a crop that grows well in swampy areas has great potential for
production of starch in Malaysia. It has been claimed that the crop can yield up to 37
tonnes of starch/ha/year, one of the highest for starch-producing crop in the world
fertilization, it has few natural pests or diseases and it can be grown in areas where it
the sago palm instead of other crops that involve the drainage of the peat swamps,
the benefits of such swamps including preventing floods and droughts and
A considerable amount of research has been done on the morphology and physiology
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(1986), Beccari (1918) and Tomlinson (1990) as cited by Flach (1997). However,
little work in isolating genes involved in the floral development process has been
conducted. The identification of the genes involved in the floral development process
process and thus provide useful tools for crops improvement. This study was carried
flower induction and development of the starch producing tree, sago palm.
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1.2 Literature review
The sago palm (Metroxylon sagu) is belongs to the Lepidocaryoid subfamily of the
perennial. The flowers of sago palm are borne spirally in pairs on the tertiary axis. Of
each pairs of flower, one is male and the other complete but only functionally female
(Flach, 1984). This plant found mainly in Papua New Guinea, Indonesia, Malaysia,
There are a number of characteristics of this crop that makes it a remarkable plant.
According to Stanton (1993), the advantages of the crops are that it is economically
vigorous and promotes socially stable agroforestry systems. The innumerable uses of
Sago starch has a multitude of uses. In Sarawak, sago starch is widely used to
produce sago pearls and "tabaloi", a local biscuit delicacy. It is also used in
production of bread flour (Dendy et al., 1970; Clarke et al., 1980), the production of
high fructose syrup (Ito et al., 1979), the manufacture of noodles, monosodium
glutamate industry and the glue industry involved in plywood manufacture (Doelle,
1998).
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Figure 1.1: The many uses of the sago palm (Baay, 1983 taken from
Flach, 1984).
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Sago palm starch is almost pure carbohydrate. It consists of 27% amylose and 73%
amylopectin (Ito et al., 1979). The granular size of sago palm starch ranges from
about 80µm to 5µm, with an average of about 30µm. About 90% of the starch has a
particle size of between 20 and 40µm. Only the granular size of potato starch is the
Sim (1977) points out that sago starch has several advantages over other starches
such as it produces sizing pastes of lower viscosity at a given concentration than such
pastes from maize and potato. In addition, it was easy to handle because of the sago
pastes are less inclined to gelate under cooling than maize pastes. The sago pastes
also show low retrogradation in which their stability in viscosity is high when kept
for long periods at near boiling point that provided they are boiled for two hours
before use.
The main impediment to the development of sago palm as a regular industrial crop is
its long period of immaturity. Therefore, it takes a long time before the harvesting
process in order to processing the sago starch. The trunk is judged to be ready for
processing in order to get starch by the stage of flowering. The reason is the trunk is
supposed to have reached its maximum starch content when the young fruits are
Apart from that, the maturation period of sago is important because sago planters’
have used the flowering stage as an indicator for logging to occur. Probably at
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flowering, the starch in the lowest part of the trunk has shifted to the top (Kraalingen,
1983). In the lowest part of the trunk, the number of vascular bundles increases, and
the bundles also become harder. This may explain why the traditional processor waits
until most of the starch from the lowest part of the trunk has been shifted in
preparation of flowering to the upper part before he harvests the trunk (Flach, 1984).
Though there are no exact measurements of the length of the growing cycle of the
sago palm from seed to next generation of seeds. Reports on the length of the life
cycle in the literature are ranging from 8 to 17 years (Flach, 1984). Figure 1.2 show
Figure 1.2: The relationships between palm age and starch accumulation.
Adapted from Flach (1984). The sago palm,p.14.
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1.2.2 Floral development
Flower is a part of the plant that allows sexual processes. The transition to flowering
marks the end of vegetative growth (during which shoots and leaves are produced)
and the beginning of reproductive development. In many plant, such as those with
single flowers, flower transition also signifies the end of indeterminate growth
Studies from the model plant Arabidopsis thaliana which was the first plant to have
its genome sequenced (The Arabidopsis Genome Initiative, 2000) showed that
flowering time genes, the floral meristem identity genes and the floral organ identity
(TFL1), and GIGANTEA (GI) are those that display major effects on the duration of
vegetative development (Tsaftaris et al., 2004). The genetic analysis of more than 80
(Blazquez et al., 2001) has led to identification of four major pathways controlling
flowering time which are the photoperiod, the vernalisation, the autonomous and the
gibberellin pathway (Araki, 2001; Mouradov et al., 2002; Simpson & Dean, 2002;
Bastow & Dean, 2003; Komeda, 2004; Parcy, 2005). The photoperiod and the
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as day length and low temperature, whereas the autonomous and the gibberellin
pathways mainly act independently of these external signals (Mouradov et al., 2002).
Floral meristem identity genes are involved in switching the fate of meristems from
vegetative to floral phase The best characterized of these genes are APETALA1
al., 2004).
Floral organ identity genes (homeotic genes), which fall into three classes: A, B and
C class genes, determine the fate of floral organ primordia. These genes have been
all three species, flowers are composed of four concentric rings (whorls) of organs,
with sepals in the first, outermost whorl, followed by petals, stamens, and carpels in
whorls 2, 3, and 4, respectively. The ABC model explains how floral organ identity
genes act combinatorially to specify each of the four organ identities (Bowman et al.,
1991; Coen & Meyerowitz, 1991). The class A genes lead to the formation of sepals,
class A and B genes together lead to the formation of petals, the class B and C genes
specify the formation of stamens, and the class C genes are required for the
formation of carpels (Irish, 1999; Ma, 2000; Theissen, 2001). Table 1.1 shows floral
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Class Genes
A APETALA 1
Arabidopsis thaliana
APETALA 2
B APETALA 3
PISTILLATA
C AGAMOUS
Although there are numerous genes involved in the control of flower formation, this
study was focus on CO and LFY gene which is the example of the flowering time
mutant flowers later than the wild type under LD, but shows similar flowering time
to the wild type under short day (SD). Consistently, the CO gene shows higher
expression under LD than SD during the day and over expression of CO causes early
LFY gene is necessary for transition to reproductive growth and the concomitant
formation of flowers. Loss of LFY function leads to leaves and shoots in place of
development (Weigel et al., 1992; Weigel & Nilsson, 1995). LFY is also required for
the transcription of representatives of all three classes of ABC genes (Weigel &
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Meyerowitz, 1993). It encodes a nuclear-localized product that can bind to DNA and
so could act directly to regulate transcription of the floral homeotic genes (Parcy et
al., 1998).
Chitinases are the protein (enzyme) that catalyses the hydrolysis of the β-1, 4-
exoskeleton of insects, of crustacean shells and of the cell wall of many fungi
(Nishizawa et al., 1993; Bishop et al., 2000; El-Sayed et al., 2000; Passarinho & de
Vries, 2002). They rapidly hydrolyzed swollen and regenerated chitin, slowly
(Hirano et al., 1988; Leah et al., 1991). Chitinases are present in many species of
higher plants, although higher plants themselves contain no chitin, chitosan or chitin
Chitinase genes have been classified in families 18 and 19 based on its amino acid
are present in bacteria, fungi, yeast, viruses, plants and animals whereas chitinase
Passarinho & de Vries, 2002). The differences in the sequence and structure
suggesting that chitinase genes of family 18 and 19 are arisen from a different
ancestor (Hamel et al., 1997). In addition, the chitinase genes of both families are
differed in several of their biochemical properties (Hart et al., 1995; Iseli et al., 1996;
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Ohno et al., 1996; Brameld et al., 1998; Brameld & Goddard, 1998; Garcia-Casado
et al., 1998).
sequences and primary structures (Collinge et al., 1993; Neuhaus et al., 1996).
genes of classes III and V belong to family 18 (Passarinho & de Vries, 2002).
which is separated from the catalytic domain that often followed by a C-terminal
extension by a short proline-rich variable hinge region (Neuhaus et al., 1991; Iseli et
terminal extension is involved in vacuolar targeting (Neuhaus et al., 1991; Iseli et al.,
1993). Chitinase genes of class II have a catalytic domain with a high sequence and
structural similarity to that of chitinase genes of class I, however, lack of both the N-
terminal cysteine-rich region and the C-terminal extension (Passarinho & de Vries,
2002). Chitinase genes of class IV have a very similar main structure with chitinase
genes of class I, but they are significantly smaller due to four deletions distributed
along the chitin-binding domain and the catalytic region (Passarinho & de Vries,
2002). According to Graham & Sticklen (1994), chitinase genes of class III are more
similar to fungal and bacterial chitinase genes than to chitinase genes of other plant.
Chitinase genes of class V have a C-terminal extension and may contain a chitin-
binding domain as well (Heitz et al., 1994; Ponstein et al., 1994). In addition,
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chitinase genes of both class III and class V display an additional lysozymal activity
response to fungal, bacteria or viral infections (Graham & Sticklen, 1994; Neuhaus,
1999; van Loon, 1999). The expression of chitinase genes also can be induced in
response to general sources of stress such as wounding, salicylic acid and ethylene or
elicitors such as fungal and plant cell wall components (Graham & Sticklen, 1994;
Zhou, 1999; Leon et al., 2001). Pathogen related proteins, chitinases play role in
plant defense by damaging the structures of the parasites (Schlumbaum et al., 1986;
Roberts et al., 1988; Bishop et al., 2000; Odjakova & Hadjiivanova, 2001). In
addition, they can work indirectly by releasing oligosaccharides that can act as
elicitors to activate other plant defense responses (Shibuya & Minami, 2001).
Several studies revealed that some chitinase genes are expressed at higher levels in
(Wemmer et al., 1994) and tomato (Harikrishna et al., 1996). The expression of
chitinase genes in flowers also have been detected in Arabidopsis thaliana (Samac
et al., 1990; Passarinho et al., 2001), petunia (Leung, 1992), parsley (Ponath et al.,
2000), rice (Takakura et al., 2000) and tobacco (Lotan et al., 1989; Trudel & Asselin,
1989; Neale et al., 1990). Moreover, the expression of chitinase genes are found in
roots of Arabidopsis thaliana (Samac &Shah,1991), rice (Lamb et al., 1991) and
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tobacco (Memelink et al.,1990; Neale et al., 1990); and in embryogenic cultures of
carrot (van Hengel et al., 1998) and spruce (Egertsdotter, 1996; Dong & Dunstan,
1997) as well. In other plants such as barley (Leah et al., 1994), carrot (van Hengel
et al., 1998), pea (Petruzzelli et al., 1999) and soybean (Yeboah et al., 1998) the
also play a role in normal developmental processes in healthy plants (de Jong et al.,
1992; de Jong et al., 1993; Kragh et al., 1996; Baldan et al., 1997; Patil & Widholm,
(DDRT-PCR)
expressed genes in various cells or under different conditions (Liang & Pardee, 1992;
Bauer et al., 1993; Liang et al., 1993). The technique which is first described by
Liang & Pardee (1992) to compare messages that differ between normal and
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organogenesis and long-term plasticity of the nervous system (Guimaraes et al.,
Subtractive hybridization is the only available technique that can be used to identify
mRNA are required in order to perform the technique (Alves et al., 1998; Sturtevant,
2000). The technique is also time consuming, tedious and difficult to perform (Alves
RNA (Alves et al., 1998; Sturtevant, 2000; Kim et al., 2004). In addition, the
technique is claimed to be simple, rapid and sensitive (Alves et al., 1998; Sturtevant,
The DDRT-PCR consists of two stages which are the generation of cDNA pools
using total RNA isolated from different cell populations as a template and an
amplification of the resulting cDNA via PCR using the same anchored oligo(dt)
Sturtevant, 2000; Wen, 2000). Separation of the DDRT-PCR amplicon from two or
more samples on adjacent lanes of sequencing gel has allowed the detection of
the differentially expressed amplicon are excised, cloned and further analysed.
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As the DDRT-PCR is simple, rapid and sensitive, it has become a popular technology
in gene expression work. In 1998, Mathews & Heinz reported the use of the
regulated genes under stressful conditions in plants (Knaap & Kende, 1995;
Momiyama et al., 1995; Sharma& Davis, 1995; Tsengh et al., 1995; Wilkinson et
al., 1995; Tieman & Handa, 1996; Alves & Vantoai, 1997). However, the technique
does have its limitations such as false positive (Sun et al., 1994; Debouck, 1995;
Wan et al., 1996) and poor reproducibility of the result (Liang & Pardee, 1995). In
addition, it is unclear how well low abundance mRNAs are represented (Bertioli et
introduced, including the use of the improved gel resolution systems (Averboukh et
al., 1996), the use of longer primers in combination with two-step PCR cycle (Zhao
et al., 1995) and the use of cytoplasmic RNA to avoid unprocessed mRNA (Bauer et
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