Master Program in Biology Unsoed - Curr 2011

MAS TER PROGRAM I N BI OLOGY | J ENDERAL S OEDI RMAN UNI VERS I TY
Study Program Profile

Master Program in Biology
Mail Address Jalan dr. Suparno 63 Karangwangkal
Purwokerto, INDONESIA 53122
Phone +62 281 625865 Fax +62 281 625865
Website http://pascabio.unsoed.ac.id Email pascabio.unsoed.ac.id
Phone +62 281 625865 Fax +62 281 625865
Phone +62 281 625865 Fax +62 281 625865
Table of Contents
1. Identity................................................................. 1
2. Program Description............................................ 3
Vision.......................................................................... 3
Mission........................................................................ 3
3. Objectives............................................................ 4
4. Graduate Profile .................................................. 5
Graduate Competence................................................ 5
Main Competence....................................................... 5
Supporting Competence ............................................. 5
Other Related Competence ........................................ 5
Prospective Students .................................................. 6
5. Structure and Systematics of the Curriculum....... 7
Streams....................................................................... 7
Curriculum................................................................... 7
Total Credits for Completion of Study ......................... 9
Course Syllabi ............................................................. 10
I D E N T I T Y
1
Identity
Jenderal Soedirman University (UJS) is a public state university
located in Purwokerto Central Java Republic of Indonesiathat was
established on September 23, 1963
{ http://unsoed.ac.id}
* Accredited by the National Accreditation Board for Higher Education
1
Institution Jenderal Soedirman University
Faculty Biology
Unit Postgraduate Program
Program Stratum S-2 (Master)
Name of Study Program Master Program in Biology
Established January 25, 2002
Degree Offered M.Si. (Master of Science)
Official Language Indonesian (90%) and written English
(required)English (100%) for International Program
(double-degree, joint-degree, etc.)
Length of Study Four semesters (Two years)
Operational Status Independent
Learning Model Conventional (lecturing)
Accreditation Status * Accredited B (SK BAN-PT No.013/BAN-PT/Ak-
V/S2/VIII/2007)
Address Jalan dr. Suparno 63 Purwokerto 53122 Telp./Fax.
(0281) 625865
Email pascabio@unsoed.ac.id
Website ht t p://pascabio.unsoed.ac.id
I D E N T I T Y
2
FIGURE 1.Jenderal Soedirman University located in Purwokerto, Indonesia marked with
(Source: http://maps.google.com).
FIGURE2.Jenderal Soedirman University campuses in Purwokerto, marked with is the
Office Building of Master Program in Biology. (Source: http://maps.google.com).
I D E N T I T Y
2
I D E N T I T Y
2
P R O G R A M D E S C R I P T I O N
3
Program Description
Biology Master Program focuses in education and research on
sustainable development oftropical bioresources.
VI SI ON
Biology Master Program will become the reference in sustainable development of
tropical bioresources.
MI SSI ONS
The Biology Master Program has missions
1. to conduct learning in order to create competitive graduates capable of
developing science and biotechnology
2. to conduct research in order to develop science and technology relevant
to Master Program Specification,
3. to apply science and technology that specify Master Program through
active participation in problem solving of rural development sustainably,
4. to improve nationally and internationally the existing networks with
stakeholders.
FIGURE3.Green Campus.
2
O B J E C T I V E S
4
Objectives
The academic programis designed
1. to provide comprehensive knowledge, skill and understanding ofBiology,
especially Biology of Animal Reproduction, Conservation Biology,
Microbiology, Biotechnology, Biomedical or Aquaculture,
2. to create skillful and competent graduates in solving problems related to
Animal Reproduction, Conservation Biology, Microbiology,
Biotechnology, Biomedical or Aquaculture,
3. to create innovative and professional graduates in Biology.
3
G R A D U A T E P R O F I L E
5
Graduate Profile
1. Biology Expert
2. Biology Researcher
Gr a duat e Compe t e nc e
he graduate of Biology Master Program is a master capable of developing
advance Biology, skillfully implementing biological science, solving problems
through integrated research, critically and comprehensively applying analytical
thinking in aspects of animal reproduction, conservation biology, microbiology,
biotechnology, biomedical or aquaculture.
Ma i n Compe t e nc e
1. Graduates are able to conduct independent research, and to recommend
biological concepts to the users,
2. Graduates are able to work professionally both as an individual and as a
team, and to communicate effectively,
3. Graduates are able to develop biological concepts as a long life learner.
Suppor t i ng Compe t e nc e
1. Graduates are experts in one of the Master Program Specification, i.e.,
animal reproduction, conservation biology, microbiology, biotechnology,
biomedical or aquaculture.
2. Graduates are skillful in using information technology to enhance their
knowledge as long life learner.
3. Graduates, using their critical thinking, are able to comment on scientific
articles.
Ot he r Re l at e d Compe t e nc e
1. Graduates are skillfully able communicate in Bahasa Indonesia
2. Graduates are skillfully able to communicate in English
4
T
6
Pr ospe c t i ve St ude nt s
he prospective students are those who hold undergraduate degree of relevant
area including biology, biological education, agriculture, forestry and
plantation, animal husbandry, fisheries, marine science, pharmacology, and
medical sciences.
FIGURE4.New student selection interview
T
6
medical sciences.
T
6
medical sciences.
T
T H E C U R R I C U L U M
7
Structure and
Systematic of the
Curriculum
St r e a ms
here are six streams available for students to choose from. These include (1)
Biology of Animal Reproduction, (2) Conservation Biology,(3)
Microbiology,(4) Biotechnology,(5) Biomedical or (6) Aquaculture.
Cur r i c ul um
The curriculum structure and systematic is presented in more detailed below.
Course Code Course Credits TotalCredits
Compulsory
BIU-1101 Research Methodology 2 (2-0)
BIU-1102 Molecular Biology 3 (2-1)
BIU-1103 Biosystematics 3 (2-1)
BIU-1104 Structure and Physiology 3 (2-1)
BIU-1105 Ecology 3 (2-1)
BIU-1201 Ethic and Philosophy of Science 2 (2-0)
BIU-1202 Seminar of Research Proposal 1 (0-1)
BIU-2201 Thesis Seminar 1 (0-1)
BIU-2202 Thesis 6 (0-6)
24 24
Stream: Animal Reproduction**
BIK-1101 Reproductive Ecology and Physiology of
Tropical Animals
3 (2-1)
BIK-1201 Biology of Tropical Animal
Development*
3 (2-1)
6
BIP Elective Courses 7-8 37-38
5
T
8
Stream: Conservation Biology**
BIK-1102 Population Biology 3 (2-1)
BIK-1202 Conservation of Natural Resources * 3 (2-1)
6
Stream: Microbiology**
BIK-1103 Ecology and Physiology of Tropical
Microbiology
3 (2-1)
BIK-1203 Microbial Genetics * 3 (2-1)
6
Stream: Biotechnology**
BIK-1104 Bioprocesses 3(2-1)
BIK-1204 Reproductive Biotechnology of Tropical
Animals *
3(2-1)
BIK-1205 Biotechnology of Tropical Plants * 3(2-1)
6
Stream: Biomedical**
BIK-1105 Ecology and Physiology of Parasites 3 (2-1)
BIK-1206 Epidemiology* 3 (2-1)
6
Stream: Aquaculture**
BIK-1106 Management and Production
Development of Aquaculture *
3 (2-1)
BIK-1101 Reproductive Ecology and Physiology of
Tropical Animals
3 (2-1)
BIK-1201 Biology of Tropical Animal
Development*
3 (2-1)
BIK-1102 Population Biology 3 (2-1)
BIK-1202 Conservation of Natural Resources * 3 (2-1)
BIK-1103 Ecology and Physiology of Tropical
Microbiology
3 (2-1)
6
9
Elective Courses**
Course Code Course Credits
BIP-1201 Reproductive Biology of Tropical Animals 2 (2-0)
BIP-1202 Physiology of Tropical Animals 3 (2-1)
BIP-1203 Animal Tissue Culture 3 (2-1)
BIP-1204 Endocrinology 3 (2-1)
BIP-1205 Aquatic Ecology 3 (2-1)
BIP-1206 Terrestrial Ecology 3 (2-1)
BIP-1207 Biorestoration of Ecosystem 3 (2-1)
BIP-1208 Ecosystem Management 2 (2-0)
BIP-1209 Community-Based Conservation 2 (2-0)
BIP-1210 Industrial Enzymology 3 (2-1)
BIP-1211 Industrial microbiology 3 (2-1)
BIP-1212 Environmental Microbiology 3 (2-1)
BIP-1213 In Vitro Culture of Plants 3 (2-1)
BIP-1214 Plant Genetic Engineering 3 (2-1)
BIP-1215 Pathology of Tropical Animals 2 (2-0)
BIP-1216 Parasitology 3 (2-1)
BIP-1217 Nutrition of Aquatic Animals 3 (2-1)
BIP-1218 Medical Microbiology 3 (2-1)
BIP-1219 Immunology 3 (2-1)
Course Code: digit 1 = year; digit 2 = semester; digit 3 and 4 = sequential order of
Notes: BIU = a Code for Compulsory Subjects of the Study Program
BIK = a Code for Compulsory Subjects of the Stream
BIP = a Code of elective subjects
* The courses are available as elective courses for undesignated streams
** Stream and Course are run if the participants are more than three people
10
Tot a l Cr e di t s f or Compl e t i on of St udy
he graduates of Biology Master Program should complete minimum of 37
credits distributed within four semesters as follows: 17 credits (semester I), 13
- 15 credits (semester), 6 credits (semester III), and 1 credits (semester IV).
Total
Credits
Semester 1
BIU-1101 Research Methodology 2 (2-0)
BIU-1102 Molecular Biology 3 (2-1)
BIU-1103 Biosystematics 3 (2-1)
BIU-1104 Structure and Physiology 3 (2-1)
BIU-1105 Ecology 3 (2-1)
BIK Streams Compulsory Courses 3 (2-1)
17 17
Total
Credits
Semester 1
BIU-1201 Ethic and Philosophy of Science 2 (2-0)
BIU-1202 Seminar of Research Proposal 1 (0-1)
BIK Streams Compulsory Courses 3 (2-1)
BIP Elective Courses 7-9
13-15 30-32
Total
Credits
Semester 3
BIU-2202 Thesis 6 (0-6)
6 36-38
Total
Credits
Semester 4
BIU-2202 Thesis Defence Seminar 1 (0-1)
1 37-39
T
11
Cour se Syl l a bi
BI U-1101 Research Met hodology 2 (2-0) *
Discusses the philosophy, procedure, methods, and evaluation techniques of research in
order to draw valid and reliable information; discusses the unbias research design.
Erwin Riyanto Ardli, S.S.i., M.Sc., Dr.rer.nat .
Alice Yuniati, I r., M.Sc., Ph.D.
Agus Nuryanto, S.Si., M.Si., Dr.
BI U-1102 Molecular Biology 3 (2-1) *
Discusses the structure and function of molecules within cell, cell interaction and
communication, molecular regulation within cell cycles; regulation of nucleic acid and
protein synthesis; technology of DNA recombinant and its application to solve
environmental, medical, and food problems.
Hendro Pramono, Drs., M.S., Dr.
Alice Yuniarti, I r., M.Sc., Ph.D.
BI U-1103 Biosyst emat ics 3 (2-1)*
Discusses the evolution biology, alpha, beta and gamma taxonomy; species concepts;
phylogeny, taxonomical revision, taxonomical data management, management of
herbarium and museum.
Agus Nuryanto, S.Si., M.Si., Dr.
Romanus Edy Prabowo, S.Si., M.Sc., Ph.D.
Pudji Widodo, Drs., M.Sc., Dr.
BI U-1104 St ruct ure and Physiology 3 (2-1)*
Discusses the structure on levels of organism, organ system, organ, tissue, cell, organel
and its physiological processes.
Gratiana E. W., Dra., M.Rep.Sc., Ph.D.
Sugiyono, S.Si., Ph.D.
BI U-1105 Ecology 3 (2-1)*
Discusses the interactions between diverse organisms in terretrial and quatic ecosystems,
and application of ecological concepts to solve environmental, medical, and food
problems.
W. Lestari, Dra., M.Sc., Dr.rer.nat.
Eming Sudiana, Drs., M.Si., Dr.
Dwi Nugroho Wibowo, Drs., M.S., Dr.
BI U-1201 Et hic and Philosophy of Science 2 (2-0)*
Discusses the casuality, essensialism, logic, and phylosophy of Biology; evaluation
theories, paradigm and change, the laws of nature, casuality and explanation; rationale of
science and its application within the social context and ethical science.
Edy Yuwono, Drs., Ph.D., Prof.
Triani Hardiyat i, Dra., SU., Dr. Prof.
BI U-1202 Seminar of Research Proposal 1 (0-1)*
Presentation of master research plan including background, problem statements,
objectives, conceptual framework, methods, proposed data analysis, and timetable.
Thesis commit tee
12
BI U-2201 Thesis Seminar 1 (0-1)*
Presentation of master research project including title, background, problem statements,
objectives, conceptual framework, hypothesis, methods, results, discussion, and
conclusion in order to diseminate the research and improve the thesis writing.
Thesis commit tee
BI U-2202 Thesis 6 (0-6)*
Thesis writing according to the official guideline. Grading of thesis is based on evaluation
of research work, thesis writing and exam.
Thesis commit tee
BI K-1101 Reproduct ive Ecology and Physiology of Tropical Animals 3
(2-1)*
Discusses the interaction mechanisms between neuroendocrine, immune, nutririon, and
environmental factors to maintain homeostatic conditions during reproductive proceses
of tropical animals; gametogenesis, reproductive cycle and strategies, consequences of
reproduction due to the environmental changes and disturbances.
Yulia Sistina, Dra., M.Sc.Stud., Ph.D.
Edy Yuwono, Drs., Ph.D. Prof.
BI K-1102 Populat ion Biology 3 (2-1)*
Discusses the parameters of population, demographical techniques, population growth,
population regulation and its application in conservation and in solving the
environmental, medical, and food problems.
I mam Widhiono M.Z., Drs., M.S., Dr.rer.nat.
Bambang Heru Budianto, Drs., M.S., Dr.
BI K-1103 Ecology and Physiology of Tropical Microbiology 3 (2-1)*
Discusses the recent finding related to microbes such as nutrition, reproduction, growth,
excretion, and quorum sensing; and their interactions with environmental factors.
Agus I riant o, Drs. MSc. Ph.D. Prof.
Ardhini Rin Maharning, Dra., M.Sc., Ph.D.
BI K-1104 Bioprocces 3(2-1)*
Discusses the primary and secondary metabolites; and material transformed by cells or
organisms.
Nuniek I na Ratnaningt yas, Dr
Ari Asnani, PhD
BI K-1105 Ecology and Physiology of Parasit es 3 (2-1)*
Discusses the physiology of parasitic organisms and disease vectors of human, parasite
interaction with environmental factors, and control of parasites to solve health problems.
Endang Srimurni Kusmintarsih, Dra., SU., PhD.
13
BI K-1106 Management and Product ion Development of Aquacult ure 3
(2-1)*
Discusses the development and management of potential water body as aquacultute areas;
technology application to improve aquaculture production through engineering, hatchery
management and fish rearing; pest and disease control.
I sdy Sulist yo, Dr, DEA.
Tjahjo Winant o, Dr.
Endang Widyastuti, MS., Dr.
Agus I riant o,Drs., MSc., Ph.D., Prof.
BI K-1201 Biology of Tropical Animal Development 3 (2-1)*
Discusses the principles, processes, and development patterns of tropical animals starting
with fertilization, embryonic development, puberty, and senescence; roles of genetic and
environmental factors on animal development, anomalies and their consequences on
development; and the application of development concepts in the biotechnology.
Edi Basuki, Ph.D.
BI K-1202 Conservat ion of Nat ural Resources 3 (2-1)*
Discusses the species extinction, conservation, and restoration; conservation on the levels
of gene, species, and ecosystem; practical application; and relationship between
conservation of natural resources and society.
Moh. Husein Sast ranegara, Drs., M.Si., Dr.rer.nat.
BI K-1203 Microbial Genet i cs 3 (2-1)*
Discusses the theories and application of classical genetic and molecular analyses on the
prokaryotic and eukaryotic organisms; genetic engineering of microbes and its application
to environment, health, and food issues.
Hendro Pramono, Drs., MS., Dr.
BI K-1204 Reproduct ive Biot echnology of Tropical Animals 3(2-1)*
Discusses the biotechnology of cryopreservation of gametes and embryos; principles and
process of polyploidy, androgenesis, gynogenesis, cloning, formation of chimeras and
transgenic animals.
Mas Yedi Sumaryadi, I r., M.S., Dr., Prof
Yulia Sistina, Dra., M.Sc.Stud., Ph.D.
BI K-1205 Tropical Plant Biot echnology 3(2-1)*
Discusses the biotechnology of vegetatif and generatif reproduction, principles and
process of polyploidy; and formation of transgenic plants.
Nurtjahjo Dwi Sasongko, Dr.Agr.
Suprayogi, I r., MSc., Ph.D.
BI K-1206 Epidemiology 3 (2-1) *
Discusses the frequency and distribution of infectious and non-infectious disease; and
factors affecting human health.
Endang Srimurni Kusmintarsih, Dra., SU., Ph.D.
14
BI P-1201 Reproduct ive Biology of Tropical Animals 2 (2-0)*
Discusses the sex determination, sexual differentiation, gametogenesis, reproductive
cycles and strategies of tropical animals.
Yulia Sistina, Dra., M.Sc., Dr.
Edy Yuwono, Drs. Ph.D.
Dadang Mulyadi Saleh, I r., M.S., M.Sc., Ph.D.
BI P-1202 Physiology of Tropical Animals 3 (2-1)*
Discusses the osmoregulation, excretion, thermoregulation, reproduction, endocrinology,
immunology, nutrition, mechanical system and coordinationof animals and their
application on health, food, and environment issues.
Edy Yuwono, Drs. Ph.D.
Purnomo Sukardi, PhD.
BI P-1203 Animal Tissue Cult ure 3 (2-1)*
Discusses the principles of animal tissue culture and its application to develop basic
research, development and biomedical research, and biotechnology.
Gratiana Ekaningsih Wijayanti, Dra., M.Rep.Sc., Ph.D.
Nuniek I na Retnaningt yas, Dra., M.S., Dr.
BI P-1204 Endocrinology 3 (2-1)*
Discusses the concepts of endocrinology, biosynthesis regulation, mechanism of action
and metabolism of hormones; coordination and integration of animal endocrine system in
development, growth, reproduction and osmoregulation; interactions between
environmental factors and endocrine system.
Edi Basuki, Ph.D
Gratiana Ekaningsih Wijayanti, Dra., M.Rep.Sc., Ph.D.
I sdy Sulist yo, I r. Dr. DEA
BI P-1205 Aquat ic Ecology 3 (2-1)*
Discusses the characteristics of freshwater (river, lake), estuarine, ocean, and interactions
within these ecosystems; trophic dynamics of each aquatic system.
W. Lest ari, Drs., M.Sc., Dr.rer.nat .
Endang Widyastuti, Dra., M.S., Dr.
Romanus Edi Prabowo, S.Si., M.Sc. Ph.D.
BI P-1206 Terrest rial Ecology 3 (2-1)*
Discusses the characteristics of natural and agroecosystem and interactions within these
ecosystems; trophic dynamics of each terrestrial ecosystem.
Eming Sudiana, Drs., M.Si., Dr.
I mam Widhiono, Drs., M.S., Dr.rer.nat.
BI P-1207 Biorest orat ion of Ecosyst em 3 (2-1)*
Discusses the principles of ecosystem restoration through application of biological system
to restore degraded environment due to anthropogenic or natural causes; techniques
applied in biorestoration and efforts to improve ecosystem quality.
Agus I riant o, Drs., M.Sc., Ph.D., Prof.
W. Lest ari, Dra.M.Sc. Dr.rer.nat.
15
BI P-1208 Ecosyst em Management 2 (2-0)*
Discusses the ecosystem degradation due to human activities and natural causes; methods
and monitoring of biological and environment techniques including biology and
environment indicators, data analysis and its application to planning model of ecosystem.
Endang Widyastuti, Dra., M.S., Dr.
Erwin Riyanto Ardli, S.Si, M.Sc. Dr.
Moh. Husein Sast ranegara, Drs., M.Si., Dr.rer.nat.
BI P-1209 Communit y-Based Conservat ion 2 (2-0)*
Discusses the community-based conservation for sustainable development through
approach of society welfare in exploiting natural resources; community-based
conservation strategies and application on the regional or global scale.
Slamet Rosyadi, S.Si., M.Si., Dr.
BI P-1210 I ndust rial Enzimology 3 (2-1)*
Discusses the isolation techniques and enzime purification, kinetic, enzim mechanism
action, regulation of enzimatic activities, and principle techniques of molecular biology in
producing bacterial enzimes.
Herast ut i Sri Rukmini, I r., MS., Dr., Prof.
Ari Asnani, M.Sc., Ph.D
Aisyah Tri Septiana, I r. MS., Dr.
BI P-1211 I ndust rial Microbiology 3 (2-1)*
Discusses the scope and history of microbiology in industry, isolation and manipulations
of microbes, growth kinetic and storage of microbes, inoculum separation, media and
technology of fermentation, enzyme and immobilization of cells, processing and quality
control.
Hendro Pramono, Drs. MS. Dr.
Nuniek I na Ratnaningt yas, MS., Dr.
BI P-1212 Environment al Microbiology 3 (2-1)*
Discusses the diversity of microbes in environtment, functional ecology of the microbes;
self purification; roles of microbes in environtment wastes; interactions between
microbes, microbes and mcroorganisms; relationship between microbes and
environmental health and society; the use of microbes to solve problems of health, food,
and environment.
Agus I riant o, Drs. MSc. Ph.D. Prof.
BI P-1213 I n Vit ro Cult ure of Plant s 3 (2-1)*
Discusses the cukture of cells, tissues, organs, proliferation processes, differentiation and
regeneration, cukture media and growth factors, clonal propagation applied to
environment, food, and health issues.
Triani Hardiyat i, Dra., SU., Dr., Prof.
BI P-1214 Plant Genet ic Engineering 3 (2-1)*
Discusses the DNA and chromosome manipulation to produce plants with particular
genes in order to fullfil the needs in health and food; the consequences of the genetically
modified plants in changing environment.
16
Nurtjahjo DS, Ma.pp.Sc., Dr.sc. Agr.
Alice Yuniaty, I r., M.Sc., Ph.D.
BI P-1215 Tropical Animal Pat hology 2 (2-0)*
Discuses the concepts and principles of infectious diseases in domestic tropical animals;
diagnose methods and evaluation, the major pathogens of domestic tropical animal and
control.
Agus I riant o, Drs., M.Sc., Ph.D., Prof.
BI P-1216 Parasit ology 3 (2-1)*
Discusses the biology of animals and human parasites, immune respond to parasites,
contagious methods, parasite distribution and monitoring methods.
Endang Srimurni Kusmintarsih, Dra., S.U, Ph.D.
BI P-1217 Aquat ic Animal Nut rit ion 3 (2-1)*
Discusses the nutrition of aquatic animal of larvae, post larvae, juveniles and adult;
feeding and food habits of larvae, post larvae, juveniles and adults; needs and utilization of
micronutrient (amino acid, vitamin and mineral) on aquatic animals.
Purnama Sukardi, I r., Ph.D.
Tjahjo Winant o, Dr.
Edy Yuwono, Drs., Ph.D.
BI P-1218 Medical Microbiology 3 (2-1)*
Discusses the relationship between microorganisms and human health with focus on
pathogen, infectious diseases, mechanism of diseases, epideniology, immunology and
disease control by antibiotic, vaccine, and immunostimulant (probiotic).
Agus I riant o, Drs. MSc. Ph.D. Prof..
A. Haris Budi Widodo, drg., M. Kes. AP., Dr.
BI P-1219 I mmunology 3 (2-1)
Discusses the recent finding in immune system such as innate and acquired immunity,
adaptive immunity and its effects on human survival.
A. Haris Budi Widodo, drg., M. Kes. AP., Dr.
Bambang Heru Budianto, Drs., MS., Dr.

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MAS TER PROGRAM I N BI OLOGY | J ENDERAL S OEDI RMAN UNI VERS I TY

Study Program Profile

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