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=
p
n
1
n
1
n
p
2
2
2
1
2
p
1
2
1
1
1
y y y
y y y
y y y
Y
(A1)
T
Y
~
is the transposed of the centered and reduced matrix Y
~
given by
(
(
(
(
(
o o o
o o o
o o o
=
) Y ( ) Y y ( ) Y ( ) Y y ( ) Y ( ) Y y (
) Y ( ) Y y ( ) Y ( ) Y y ( ) Y ( ) Y y (
) Y ( ) Y y ( ) Y ( ) Y 2 y ( ) Y ( ) Y y (
Y
~
1 p
p
n 2 2
2
n 1 1
1
n
p p
p
2
2 2
2
2 1 1
1
2
p p
p
1
2 2 1 1
1
1
(A2)
Where, ) Y (
i
o represents the standard deviation of column i , it is calculated by the
equation (A3),
( )
=
= o
n
1 j
2
i
i
j i
Y y
n
1
) Y ( (A3)
And,
i
Y the mean of column i , is calculated by equation (A4),
=
=
n
1 j
i
j i
y
n
1
Y (A4)
M. Mesri et al.
424
The correlation matrix R is obtained as follows
(
(
(
(
(
(
(
(
(
(
= =
p
n
p
2
1 p
1
2
n
2
2
1
1
1
n
1
2
1
1
p
n
p
2
1 p
1
2
n
2
2
1
1
1
n
1
2
1
1
T
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
y
~
Y
~
Y
~
R
(A5)
Principal axes are the eigenvectors
i
u of the correlation matrices. Let us considered
I , the identify matrix, the eigenvalues are solutions of the equation (A6).
0 ) I R ( det = (A6)
Variability
i
Var and accumulation
i
Cu in % are calculated using the eigen value
i
as given by Equation (A6).
=
i
i
i
i
Var (A7)
i 1 i i
Var Cu Cu + =
(A8)
The principal factor
,
i
u associated with the principal axis
i
u is the normalized
eigenvector,
i
i ,
i
u
u
u = (A9)
where,
i
u is the square norm of the eigenvector.
Correlation between variables and principal components is noted
i
Cv and is
obtained by equation (A10).
,
i
i i
u Cv = (A10)
Principal components are the variables
n i
R C e defined by the principal factors by
the relation,
,
i
i
u Y
~
C = (A11)
i
1
) C ( Var = (A12)
One of the expected objectives of PCA is graphical representation of individuals. It
is used to represent individuals on a map in two dimensions (Fig. 2) and thus to identify
trends, coordinates of individuals are obtained according to equation (A11).