You are on page 1of 31

CSIRO ECOSYSTEM SCIENCES

Landguard

TM

A900

An enzyme-based remediant for the detoxification of


organophosphate insecticides in animal dips

Dr. Colin Scott


CSIRO Ecosystem Science, GPO Box 1700, Canberra, ACT2601, Australia
8th June 2012
Prepared for: Groundwater and Contaminated Land Environment Agency
Olton Court 10, Warwick Road, Olton, Solihull, B92 7HX

Copyright and disclaimer


2012 CSIRO To the extent permitted by law, all rights are reserved and no part of this publication
covered by copyright may be reproduced or copied in any form or by any means except with the written
permission of CSIRO.
Important disclaimer
CSIRO advises that the information contained in this publication comprises general statements based on
scientific research. The reader is advised and needs to be aware that such information may be incomplete
or unable to be used in any specific situation. No reliance or actions must therefore be made on that
information without seeking prior expert professional, scientific and technical advice. To the extent
permitted by law, CSIRO (including its employees and consultants) excludes all liability to any person for
any consequences, including but not limited to all losses, damages, costs, expenses and any other
compensation, arising directly or indirectly from using this publication (in part or in whole) and any
information or material contained in it.

Acknowledgements

Time Animal Health (Australia) for provided training in the handling of sheep dipping chemical and
equipment. The biodegradability studies were conducted by RCC Ltd (Switzerland). Field trial samples were
analysed by Gribbles Analytic Laboratory (Australia). Ecotoxicology and metabolite data for LandguardTM,
diazinon and the diazinon metabolites were provided by the National Research Centre for Environmental
Toxicology (EnTox; Australia).

Summary

This report provides details of the LandguardTM A900 product developed by the Commonwealth Sientific
and Industrial Research Organization (CSIRO).

LandguardTM is a suite of enzyme-based technology for the rapid detoxification of pesticides

LandguardTM OP-A and LandguardTM A900 have been developed for the remediation of
organophosphate insecticide (OPs) residues

Both LandguardTM OP-A and LandguardTM A900 are based on the bacterial phosphotriesterase
OpdA. LandguardTM OP-A is unmodified and LandguardTM A900 contains five amino acid
substitutions that improve its performance against some OPs

The product is a freeze dried homogenate of a bacterial fermentation; there is no DNA in the
product

LandguardTM has no observable toxic effects, although it can cause minor skin irritation

LandguardTM is biodegradable and non-persistent in the environment

The products of OP degradation by LandguardTM A900 are > 10,000-fold less toxic than the OPs

When refrigerated, freeze-dried LandguardTM retains >90% of its activity for the first 4 months,
packaging will account for this rate of decay and provide a shelf-life of 6 months

Field trials of LandguardTM A900 have demonstrated its efficacy in animal dips

A dose rate of 1 g / 100 L is recommended to enable >99% reduction in OP concentration in 12


hours.

Contents

Acknowledgements

Summary

1. Introduction

2. Bacterial phosphotriesterase

3. Production of LandguardTM

12

4. Biodegradability and toxicity of LandguardTM

13

5. Metabolite toxicity

16

6. Stability of Freeze-Dried LandguardTM

17

6. Efficacy of LandguardTM

19

References

21

Appendix 1: Related patents

24

Appendix 2: Product label

25

Appendix 3: OpdA (wild-type) protein sequence

26

Appendix 4: OpdA (A900) protein sequence

28

Appendix 5: Methyl parathion assay

30

Introduction

LandguardTM A900 is an enzyme-based technology developed by the CSIRO for the rapid remediation of
organophosphate insecticide residues from water and wetable surfaces [1], and is covered by a number of
patents (Appendix 1). Enzymes that degrade pesticides to compounds of lower toxicity are sourced from
nature (insects, bacteria etc)[2,3] and produced in a suitable fermentation organism (E. coli). Currently
LandguardTM A900 is produced as a freeze-dried homogenate of the production organism that has been
treated to remove the organisms DNA (Appendix 2 contains the label for this product).
A number of enzymes that target different pesiticide chemistries have been isolated and developed as
bioremediants for the LandguardTM range; the most advanced of these are the enzymes that target
organophosphate insecticides (LandgardTM OP and LandguardTM A900), synthetic pyrethroid insecticides
(LandguardTM SP) and triazine herbicides (LandguardTM TRZ).
The technical performance,[1,4,5] toxicity [1] and environmental fates [1] of LandguardTM have been
assessed, demonstrating that the product is both effective and suitable for use in environmental ground
water, such as irrigation tail water.
The product formulation (i.e. freeze-dried, wetable powder) is effective and convenient for use in static
water applications, such as animal dips. In these applications a dose rate of 1 g/100 L is recommended to
achieve > 99% reduction in contamination in the first 12 hours.
The CSIRO are currently developing time release formulae for dosing LandguardTM into moving water.

Bacterial phosphotriesterase

The LandguardTM A900 technology is based on a bacterial phosphotriesterase (PTE; EC 3.1.8.1), OpdA,
which is remarkably well suited for use as a free-enzyme bioremediant [3,6,7,8].
The gene encoding OpdA was isolated from an Agrobacterium species [9], as a chromosomally located
open-reading frame associated with transposable elements [10]. The encoded enzyme is a ca. 30 kDa
metal-dependent 8/8 hydrolase [11,12,13], most closely related to another bacterial PTE, OPH, isolated
from Pseudomonas dimuta [14] and Flavobacterium sp. [15]. The activities and rates of OPH and OpdA are
similar, although OpdA has a ca. 10-fold higher activity than OPH against OPs with dimethyl side chains
[9,16]. Phosphotriesterases have been shown to be active against a wide range of OP insecticides,
including the high use insecticides parathion, chlorpyrifos, chlorfenvinphos and diazinon (Table 1).
OpdA hydrolyses one of the three phosphoester bonds of the phosphotriesters (Fig. 1) by nucleophilic
substitution (an SN2 mechanism) of the phosphoester group by a metal activated water [13,17,18,19]. This
reaction can approach diffusion limited rates of 107 sec-1.M-1 [20].

Figure 1. Hydrolysis of an organophosphorous insecticide (diazinon) by the phosphotriesterases


OpdA and OPH. The products are diethyl thiophosphoric acid and 2-isopropyl-4 methyl-pyrimidin-6ol.

Hydrolysis of a single phosphoester group yields a phosphodiester of considerably lower toxicity than the
parent phosphotriester.

The efficiency of the wild-type enzyme varies depending on the

organophosphorous substrate, from 9.6 sec-1.M-1 for the Z-isomer of chlorfenvinphos up to greater than
1 x 107 sec-1.M-1 for paraoxon, methyl paraoxon, methyl parathion and methyl chlropyrifos oxon (Table 1).

Its broad substrate range, rapid rate of hydrolysis and cofactor-free reaction mechanism make OpdA an
ideal candidate as a bioremediant of OP insecticides [3,6,21,22,23].

Table 1. Insecticide and nerve agent phosphotriesters degraded by the wild-type


phosphotriesterases OpdA and OPH. Second order rate constants (k c a t /K M ) are shown.
Phosphotriester

Structure

kcat/KM
-1

Sources
-1

(sec .M )*
S
P
S
HN
O

Acephate

[24,25]

[24,25,26]

[27]

[27]

[28]

[24,25,29]

1.8 x 10

S
P

O
O

Coumaphos

1.5 x 10

Cl

O
P

Chlorfenvinphos
isomer)

(E-

Cl
Cl

8.4 x 10

Cl

O
O

Chlorfenvinphos
isomer)

(Z-

O
P

Cl

Cl

9.6 x 10
Cl

S
P
O
O
N

Chlorpyrifos

Cl

Cl

2.8 x 10

Cl

O
P
O
S

Demeton-S

1.6 x 10

S
P
O
O
N

Diazinon

[25]

[27]

[17]

[17]

[26,30,31]

[32]

[33]

[24]

1.5 x 10

S
P
O
O

Dichlorvos

8.1 x 10

Cl
Cl

O
P
O
O

Diethyl 4-chlorophenyl
phosphate

2.2 x 10
Cl

S
P
O
O

Diethyl 4-chlorophenyl
thiophosphate

4.4 x 10
Cl

Diisopropyl
fluorophosphate

O
P
O

Dimethoate

7.8 x 10

9.0 x 10

NH
O

1.5 x 10

Fensulfothion
S O

Malathion

O
O

O
S

S
P

4.8 x 10

O
P
O
O
N

Methyl chlorpyrifos oxon

Cl

[32]

[32]

[30,32]

Cl

1.3 x 10

Cl

1.8 x 10

Cl

S
P
O
O
N

Methyl chlorpyrifos thion

Cl
Cl

O
P
O O

1.1 x 10

Methyl paraoxon
NO2

S
P
O O

1.2 x 10

Methyl parathion

[13,24,30,34
]

NO2

O
P
O O

5.5 x 10

Paraoxon

[26,29,30,31
,35,36,37]

NO 2

S
P
O O

[17,30,34]

[25]

2.7 x 10

Parathion
NO 2

S
O P
O
S
N

Phosalone

2.4 x 10
O

Cl

S
O P O
O
N

Quinalphos

9.8 x 10

CS
Unpublished

O
O

O
P

Cl

Tetrachlorvinphos
Cl

Cl

ND

[38]

Cl

Enzyme engineering and in vitro evolution have been used extensively with the bacterial
phosphotriesterases to produce variant enzymes with significantly improved kinetic properties. This has
been facilitated by the wealth of structural and mechanistic data that is available for these enzymes
[12,13,16,17,18,20,27,39,40,41,42,43,44,45].
The value of being able to improve the properties of OpdA, and indeed any free-enzyme bioremediant, are
exemplified by the composition of LandguardTM A900. LandguardTM A900 is identical to the wild-type
enzyme at all amino acid positions except for five (Ala52Val, Ser64Ala, Lys157Arg, Asp204Glu and
Asn237Asp; Appendix 3 and Appendix 4). A900 possess higher kcat/Km values than the wild-type OpdA
against commercially important OP insecticides chlorpyrifos methyl, diazinon and parathion ethyl (Table 2).
The cofactor requirements, catalytic mechanism and hydrolysis products are identical to the wild-type
enzyme. A provisional patent covering the A900 variant of OpdA has been lodged.

Table 2. Comparison of the second order rate constants (k c a t /K M )* of OPH, OpdA and the rationally
designed OpdA variant A900 against commercially important OP insecticides. k c a t /K M values were
obtained for enzymes purified by the methods described in jackson et al, 2006 [12]. Hydrolysis rates
were determined at 25C in MOPS buffer (pH8.0) using UV-vis spectroscopy at 250 nm (diazinon),
330 nm (chlorpyrifos ethyl and methyl) and 405 nm (parathion ethyl and methyl).

10

Insecticide

Chlorpyrifos ethyl

Structure

H3C

S
CH3
O P O
O
N
Cl

kcat/KM (sec-1.M-1)
OpdA

A900

2.8 x 106

2.2 x 106

1.2 x 104

3.7 x 105

1.9 x 106

3.9 x 106

1.7 x 107

9.4 x 107

5.0 x 106

3.6 x 106

Cl
Cl

Chlorpyrifos methyl

CH3
S
O P O
O
N
Cl
H3C
Cl
Cl
S
H3C

CH3

O P O
O

Diazinon

H3C
S

Parathion

H3C

CH3
N

CH3
CH3

O P O
O

ethyl

OH

O
S

Parathion methyl

CH3

O P O
H3C
O
+

OH

11

Production of LandguardTM A900

LandguardTM A900 is produced by fermentation in Escherichia coli BL21 DE3. E. coli BL21 DE3 are
transformed with the OpdA A900 expression vector (pETCC2:A900), and a seed culture prepared by growth
over night in Erlenmeyer flasks.
Seed cultures are used to seed fermentation in a fed-batch fermenter in a defined medium, with
expression of the phosphotriesterase induced by the addition of isopropyl--D-thio-galactoside.
At the completion of the fermentation process the culture is homogenized, DNA removed by precipitation
with polyethyleneimine followed by clarification and freeze drying and packaging.

12

Biodegradability and toxicity of LandguardTM A900

The safety of LandguardTM A900 to mammals was established in formal toxicity studies with Wistar rats
(Table 3). LandguardTM was either fed or applied dermally to the animals (Table 3) at dose rates of 50, 200
and 1000 mg/kg per day for 28 days (oral) or at 4 mL/kg of a 500 mg/mL solution per day for 15 days
(dermal). Biopsies revealed no noticeable detrimental effects of oral LandguardTM application in the rats,
whilst the dermal application produced a mild skin irritation with no clinical effects.
To test for any environmental toxicity of LandguardTM, it was applied at 1g/L to activated sludge, and at
100 mg/L to the alga Scenedesmus subspicatus, the arthropod Daphnia magna, and the fish species
Brachydanio rerio, with no adverse affects found in any of these indicator species. The dose rates used in
these toxicity and ecotoxicity studies were higher than in many of the successful field trials (see below),
demonstrating that this bioremediant could be safely used in environmental applications.
The ecotoxicology studies of LandguardTM were also complemented with a study of its biodegradability
(Figure 2). In this study the rate of digestion of LandguardTM was assessed in a manometric respirometry
test, whereby the amount of LandguardTM digested was calculated based on the biological oxygen demand
of activated sludge fed with LandguardTM as carbon source. An equivalent amount of carbon, provided as
the readily digestible compound sodium benzoate, was used as a positive control. The result of this test
was that > 95% of both the LandguardTM and the sodium benzoate were digested over a 15 day period,
showing that LandguardTM is readily degraded. Furthermore, there was no reduction in the biological
oxygen demand when sodium benzoate and LandguardTM were added simultaneously, suggesting that
LandguardTM has no inhibitory affect upon bacterial growth when it is not the sole carbon source.
The stability of LandguardTM in natural water was also monitored, using the hydrolysis of methyl parathion
as an indication of the relative amount of LandguardTM remaining in the sample (Table 3). In this
experiment the half-life of LandguardTM was seventy nine hours, with less than 1 percent of the original
activity remaining after seven days. These data suggest that LandguardTM is biodegradable, and has a
relatively short half-life in natural systems.

Table 3. Ecotoxicity and mammalian toxicity of Landguard TM

13

Test

Monitoring

Dose rate

Effect of Landguard

time
Scenedesmus subspicatus
Activated sludge

72 hour

100 mg/L

3 hour

1000 mg/L

No growth effects observed


No inhibitory effect on bacterial
respiration

Brachydanio rerio

96 hour

100 mg/L

No mortality or visible
abnormalities observed

Daphnia magna

48 hour

100 mg/L

No mortality (immobilisation of
cells) observed

Wistar rat (oral)

50, 200 and

All test animals survived with no

(n = 30, 5 male and 5

1000

apparent signs of toxicity. No

female at each dose rate)

mg/kg/day

adverse responses were observed.

4 mL/kg of a

Slight general erythema observed

(n= 10, 5 male and 5

0.5 g/mL

in test animals. No clinical effects

female)

solution

noted.

Rats (Dermal)

28 day

15 days

Figure 2. Biodegradability of Landguard TM (diamonds), sodium benzoate (triangles). Inhibition of the


biodegradation of sodium benzoate by Landguard T M was also assessed (squares).

Table 4. Stability of LandguardTM in natural water. The activity (U/L) of Landguard TM was measured
using methyl parathion as substrate. One unit of enzyme activity (U) is equivalent to the amount of
enzyme required to hydrolyse 1 mol of methyl parathion per minute.
14

Time (hours)

Activity (U/L)*

Activity (% initial)

2133

100%

17

2306

108%

24

2341

110%

48

1894

89%

96

624.4

29%

168

19.55

0.92%

Table 5. Toxicity of diazinon to Ceriodaphnia dubia before and after treatment with Landguard T M
dosed at 0.05g/L. EC50, effective concentration for 50% survival; LOEC, Lowest concentration at
which an effect is observed; NOEC: Highest concentration at with no effect is observed
Untreated
Landguard TM OP
Fold improved survival
diazinon

treated diazinon*

24

48

24

48

hours

hours

hours

hours

EC 50 (g/L)

0.389

0.195

73,000

46,100

LOEC (g/L)

0.55

0.275

100,000

100,000

NOEC (g/L)

0.275

0.138

30,000

30,000

24 hours

48
hours

1.9 x 105

1.9 x 105

15

Metabolite toxicity

Detoxification of the pesticide was established by exposing an indicator arthropod species, Ceriodaphnia
dubia, to either untreated diazinon (50 mg/L) or diazinon (50 mg/L) that had been pre-treated with
LandguardTM (Table 5). The survival rate of the Ceriodaphnia was monitored after twenty four and forty
eight hours of exposure. At both time points the EC50 (effective concentration for 50% survival) for
Ceriodaphnia exposed to the LandguardTM treated diazinon was nearly 200,000 times greater than for
exposure to the untreated pesticide. Similarly impressive increases in the LOEC (Lowest concentration at
which an effect is observed; Table 5) and NOEC (Highest concentration at with no effect is observed; Table
5) were also observed. The products of diazinon hydrolysis by LandguardTM were confirmed by mass
spectroscopy to be diethyl thiophosphoric acid and 2-isopropyl-4 methyl-pyrimidin-6-ol, consistent with
the

characterised mechanism of phosphotriesterases (Fig. 1). These data clearly demonstrate that

LandguardTM performs in a predictable manner and that its action significantly detoxifies the
phosphotriester insecticide.
Extensive ecotoxicological data are also available for another OP insecticide, chlorpyriphos, and its
hydrolysis products (diethyl thiophosphoric acid and TCP; 3,5,6 trichloropyridin-2-ol) [46]. Both products
are considerably less toxic than the parent compound. For example, chlorpyrifos has an LD50 of 4.2 g/L for
Bluegill, compared with 12,500 g/L for TCP (ca. 3,000 times less toxic) [47]. TCP does not cause
cholinesterase enzyme inhibition and is of low to moderate toxicity to aquatic and terrestrial biota [46].
The hydrolysis of insecticidal phosphotriesters catalysed by OpdA therefore represents a significant
reduction in their mammalian toxicities and ecotoxicities.

16

Stability of Freeze-Dried LandguardTM

Early stability testing of freeze-dried LandguardTM A900 by Orica Australia Pty Ltd indicated that, when
stored at less than 5C, LandguardTM retained more than 80 % of its activity after 6 months (Figure 3). In
these assessments LandguardTM that had been stored at 5C was tested for activity using the standard
assay for methyl parathion activity (Appendix 5). CSIRO has conducted similar testing and found that the
Orica data were reproducible, and that >90% of the initial activity of the LandguardTM A900 is retained for
the first 4 months. The activity decay in the CSIRO experiments was nearly identical to that found by Orica.
Similar experiments were conducted by both CSIRO and Orica in which Landguard was stored at 25C
(Figure 4). In these experiments >70% of activity was retained after 4 months, with both sets of data
showing similar rates of decay.

17

Stability of refrigerated LandguardTM A900 produced


by Orica Australia Pty Ltd and CSIRO
120

Residual activity (%)

100
80
60

4C (CSIRO)
5C (ORICA)

40
20
0
0

Time (months)
Figure 3. Stability of Landguard TM A900 over 6 months at <5C.

Stability of unrefrigerated LandguardTM A900


produced by Orica Australia Pty Ltd and CSIRO
120

Residual activity (%)

100
80
60
25C (CSIRO)
25C (ORICA)

40
20
0
0

Time (months)

Figure 4. Stability of Landguard TM A900 over 6 months at 25C.

18

Efficacy of LandguardTM

The efficacy of the LanguardTM propduct has been investigated for a number of potential applications and
field trials have been conducted for the treatment of dip liquor, irrigation tail water, and soil and
commodity treatments. The details of these trials (below) indicate that LandguardTM is highly effective in
the treatment of aqueous contamination and the treatment of soils and commodities has a great deal of
early promise.
Parasite control often involves plunge-dipping livestock into quite concentrated OP insecticide solutions,
leaving pesticide-containing spent dip liquor that requires appropriate disposal. Free-enzyme
bioremediation provides a solution for the rapid clean up of these liquors, allowing them to be disposed of
safely. The OP-degrading LandguardTM was used in five trials in Australia to remediate diazinon from spent
liquors. The volumes of the dipping tanks varied from 3,000 8,000 litres, with diazinon concentrations
ranging from 0.91 75 mg/L (Table 6). The diazinon used was formulated by either Coopers (North Ryde,
NSW, Australia) or Vibrac Animal Health (Milperra, NSW, Australia). Enzyme amounts added varied
between 103 and 5150 U/L (where a unit, U, is defined as the amount of enzyme that is required to
degrade 1 mol of methyl parathion in one minute), and treatment times ranged between 10 and 60
minutes.
The degree of diazinon degradation achieved varied in a predictable manner according to the amounts of
enzyme and substrate involved and the treatment time. However there were clearly a range of conditions
under which better than 99% degradation was consistently achieved. Notably also, the time periods tested
in these field trials was much shorter than a farmer may need (often overnight treatment will be quite
adequate), so enzyme dose rates can be reduced significantly, whilst still achieving the same levels of
decontamination. In fact dose rates of 1 g/100 L (equivalent of 20 U/L) are currently recommended for a
three hour treatment in order that a 99.99 % reduction in OP concentration can be achieved.

19

Table 6. Australian field trials of Landguard TM in spent diazinon-based sheep dip liquors. Trials
occurred in Victoria (Darlingtion and Lake Bolac), New South Wales (Gundagai), South Australia
(Loxton) and Tasmania (Flinders Island). One unit of enzyme activity (U) is equivalent to the
amount of enzyme required to hydrolyse 1 mol of methyl parathion per minute.
Date
2004

2004

2005

2005

Location*
Darlington

Lake Bolac

Gundagai

Loxton

Formulation
Coopers

Virbac

Coopers

Coopers

[Enzyme] (U/L)

Time (min)
0

Flinders Island

Coopers

% hydrolysis

0.91

625

10

0.11

87.91

625

20

0.01

99.23

34.7

1030

30

<0.01

>99.97

1030

60

<0.01

>99.97

257

30

<0.01

>99.97

515

30

<0.01

>99.97

1030

30

<0.01

>99.97

59.3

515

30

9.6

83.81

515

60

96.63

103

30

47

20.74

257

30

33

44.35

515

30

12.3

79.26

2060

30

0.76

98.72

75

30

0.41

99.45

0
2575

2005

[Diazinon] (mg/L)

2575

60

0.079

99.89

515

30

5.9

92.13

1030

30

2.3

96.93

2060

30

1.6

97.87

2575

30

0.71

99.05

3090

30

0.58

99.23

5150

30

0.21

99.72

39.4

724

20

<0.05

>99.87

724

30

<0.05

>99.87

724

30

<0.05

>99.87

30.5

839

20

<0.05

>99.84

839

30

<0.05

>99.84

839

30

<0.05

>99.84

20

References

1. Scott C, Begley C, Taylor MJ, Pandey G, Momiroski V, et al. (2011) Free-Enzyme Bioremediation of Pesticides: A
case study for the enzymatic remediation of organophosphorous insecticide residues. In: Goh KS, Bret BL,
Potter TL, Gan J, editors. Pesticide Mitigation Strategies for Surface Water Quality. Washington DC: American
Chemical Society. pp. 155-174.
2. Russell RJ, Scott C, Jackson CJ, Pandey R, Pandey G, et al. (2011) The evolution of new enzyme function: lessons
from xenobiotic metabolizing bacteria versus insecticide-resistant insects. Evolutionary Applications 4: 225248.
3. Scott C, Pandey G, Hartley CJ, Jackson CJ, Cheesman MJ, et al. (2008) The enzymatic basis for pesticide
bioremediation. Indian Journal of Microbiology 48: 65-79.
4. Anderson B, Phillips B, Hunt J, Largay B, Shihadeh R, et al. (2011) Pesticide and toxicity reduction using an
intergrated vegetated treatment system. Environmental Toxicology and Chemistry 30: 1036-1043.
5. Scott C, Lewis SE, Milla R, Taylor MC, Rodgers AJW, et al. (2010) A free-enzyme catalyst for the bioremediation of
environmental atrazine contamination. Journal of Environmental Management 91: 2075-2078.
6. Sutherland TD, Horne I, Weir KM, Coppin CW, Williams MR, et al. (2004) Enzymatic bioremediation: From enzyme
discovery to applications. Clinical and Experimental Pharmacology and Physiology 31: 817-821.
7. Theriot CM, Grunden AM (2011) Hydrolysis of organophosphorus compounds by microbial enzymes. Applied
Microbiology and Biotechnology 89: 35-43.
8. Singh BK (2009) Organophosphorus-degrading bacteria: ecology and industrial applications. Nature Reviews
Microbiology 7: 156-164.
9. Horne I, Sutherland TD, Harcourt RL, Russell RJ, Oakeshott JG (2002) Identification of an opd (organophosphate
degradation) gene in an Agrobacterium isolate. Applied and Environmental Microbiology 68: 3371-3376.
10. Horne I, Qiu XH, Russell RJ, Oakeshott JG (2003) The phosphotriesterase gene opdA in Agrobacterium radiobacter
P230 is transposable. Fems Microbiology Letters 222: 1-8.
11. Shim H, Raushel FM (1999) Assembly of the binuclear metal center of the bacterial phosphotriesterase from
Pseudomonas diminuta. Faseb Journal 13: A1445-A1445.
12. Jackson CJ, Carr PD, Kim HK, Liu JW, Herrald P, et al. (2006) Anomalous scattering analysis of Agrobacterium
radiobacter phosphotriesterase: the prominent role of iron in the heterobinuclear active site. Biochemical
Journal 397: 501-508.
13. Jackson CJ, Foo JL, Kim HK, Carr PD, Liu JW, et al. (2008) In crystallo capture of a Michaelis complex and productbinding modes of a bacterial phosphotriesterase. Journal of Molecular Biology 375: 1189-1196.
14. Dumas DP, Caldwell SR, Wild JR, Raushel FM (1989) PURIFICATION AND PROPERTIES OF THE
PHOSPHOTRIESTERASE FROM PSEUDOMONAS-DIMINUTA. Journal of Biological Chemistry 264: 1965919665.
15. Brown KA (1980) Phosphotriesterases of Flavobacterium sp. Soil Biology & Biochemistry 105-112.
16. Horne I, Qiu XH, Ollis DL, Russell RJ, Oakeshott JG (2006) Functional effects of amino acid substitutions within the
large binding pocket of the phosphotriesterase OpdA from Agrobacterium sp P230. Fems Microbiology
Letters 259: 187-194.
17. Aubert SD, Li YC, Raushel FM (2004) Mechanism for the hydrolysis of organophosphates by the bacterial
phosphotriesterase. Biochemistry 43: 5707-5715.

21

18. Jackson C, Kim HK, Carr PD, Liu JW, Ollis DL (2005) The structure of an enzyme-product complex reveals the
critical role of a terminal hydroxide nucleophile in the bacterial phosphotriesterase mechanism. Biochimica
Et Biophysica Acta-Proteins and Proteomics 1752: 56-64.
19. Khurana JL, Jackson CJ, Scott C, Pandey G, Horne I, et al. (2009) Characterization of the phenylurea hydrolases A
and B: founding members of a novel amidohydrolase subgroup. Biochemical Journal 418: 431-441.
20. Caldwell SR, Newcomb JR, Schlecht KA, Raushel FM (1991) LIMITS OF DIFFUSION IN THE HYDROLYSIS OF
SUBSTRATES BY THE PHOSPHOTRIESTERASE FROM PSEUDOMONAS-DIMINUTA. Biochemistry 30: 7438-7444.
21. Richins RD, Kaneva I, Mulchandani A, Chen W (1997) Biodegradation of organophosphorus pesticides by surfaceexpressed organophosphorus hydrolase. Nature Biotechnology 15: 984-987.
22. Russell RJ, Harcourt RL, Oakeshott JG (1998) Bioremediation of pesticides using enzymes. In: Kennedy IR, Skerritt
JH, Johnson GI, Highley E, editors. Seeking Agricultural Produce Free of Pesticide Residues. pp. 341-348.
23. Singh S, Kang SH, Mulchandani A, Chen W (2008) Bioremediation: environmental clean-up through pathway
engineering. Current Opinion in Biotechnology 19: 437-444.
24. Efremenko EN, Sergeeva VS (2001) Organophosphate hydrolase - an enzyme catalyzing degradation of
phosphorus-containing toxins and pesticides. Russian Chemical Bulletin 50: 1826-1832.
25.

Lai K, Stolowich NJ, Wild JR (1995) CHARACTERIZATION OF P-S BOND HYDROLYSIS IN


ORGANOPHOSPHOROTHIOATE PESTICIDES BY ORGANOPHOSPHORUS HYDROLASE. Archives of Biochemistry
and Biophysics 318: 59-64.

26. Dave KI, Miller CE, Wild JR (1993) CHARACTERIZATION OF ORGANOPHOSPHORUS HYDROLASES AND THE
GENETIC MANIPULATION OF THE PHOSPHOTRIESTERASE FROM PSEUDOMONAS-DIMINUTA. ChemicoBiological Interactions 87: 55-68.
27. Jackson CJ, Weir K, Herlt A, Khurana J, Sutherland TD, et al. (2009) Structure-Based Rational Design of a
Phosphotriesterase. Applied and Environmental Microbiology 75: 5153-5156.
28. Cho CMH, Mulchandani A, Chen W (2004) Altering the substrate specificity of organophosphorus hydrolase for
enhanced hydrolysis of chlorpyrifos. Applied and Environmental Microbiology 70: 4681-4685.
29. Reeves TE, Wales ME, Grimsley JK, Li P, Cerasoli DM, et al. (2008) Balancing the stability and the catalytic
specificities of OP hydrolases with enhanced V-agent activities. Protein Engineering Design & Selection 21:
405-412.
30. Briseno-Roa L, Hill J, Notman S, Sellers D, Smith AP, et al. (2006) Analogues with fluorescent leaving groups for
screening and selection of enzymes that efficiently hydrolyze organophosphorus nerve agents. Journal of
Medicinal Chemistry 49: 246-255.
31. Dumas DP, Durst HD, Landis WG, Raushel FM, Wild JR (1990) INACTIVATION OF ORGANOPHOSPHORUS NERVE
AGENTS BY THE PHOSPHOTRIESTERASE FROM PSEUDOMONAS-DIMINUTA. Archives of Biochemistry and
Biophysics 277: 155-159.
32. Jackson CJ, Liu JW, Coote ML, Ollis DL (2005) The effects of substrate orientation on the mechanism of a
phosphotriesterase. Organic & Biomolecular Chemistry 3: 4343-4350.
33. Dumas DP, Caldwell SR, Wild JR, Raushel FM (1989) Purification and properties of the phosphotriesterase from
Pseudomonas diminuta. Journal of Biological Chemistry 264: 19659-19665.
34. Votchitseva YA, Efremenko EN, Aliev TK, Varfolomeyev SD (2006) Properties of hexahistidine-tagged
organophosphate hydrolase. Biochemistry-Moscow 71: 167-172.
35. Herkenhoff S, Szinicz L, Rastogi VK, Cheng TC, DeFrank JJ, et al. (2004) Effect of organophosphorus hydrolysing
enzymes on obidoxime-induced reactivation of organophosphate-inhibited human acetylcholinesterase.
Archives of Toxicology 78: 338-343.
36. Grimsley JK, Calamini B, Wild JR, Mesecar AD (2005) Structural and mutational studies of organophosphorus
hydrolase reveal a cryptic and functional allosteric-binding site. Archives of Biochemistry and Biophysics 442:
169-179.
22

37. Roodveldt C, Tawfik DS (2005) Directed evolution of phosphotriesterase from Pseudomonas diminuta for
heterologous expression in Escherichia coli results in stabilization of the metal-free state. Protein
Engineering Design & Selection 18: 51-58.
38. Ortiz-Hernandez ML, Quintero-Ramirez R, Nava-Ocampo AA, Bello-Ramirez AM (2003) Study of the mechanism of
Flavobacterium sp for hydrolyzing organophosphate pesticides. Fundamental & Clinical Pharmacology 17:
717-723.
39. Hong SB, Raushel FM (1995) STRUCTURE-REACTIVITY RELATIONSHIPS FOR THE HYDROLYSIS OF SUBSTRATES BY
THE BACTERIAL PHOSPHOTRIESTERASE. Faseb Journal 9: A1340-A1340.
40. Holden HM, Raushel FM (2002) Structural and functional analyses of phosphotriesterase from Pseudomonas
diminuta. Abstracts of Papers of the American Chemical Society 223: 196-PHYS.
41. Yang H, Carr PD, McLoughlin SY, Liu JW, Horne I, et al. (2003) Evolution of an organophosphate-degrading
enzyme: a comparison of natural and directed evolution. Protein Engineering 16: 135-145.
42. Cho CMH, Mulchandani A, Chen W (2006) Functional analysis of organophosphorus hydrolase variants with high
degradation activity towards organophosphate pesticides. Protein Engineering Design & Selection 19: 99105.
43. Raushel FM (2004) Engineered variants of phosphotriesterase for enhanced detoxification of organophosphate
nerve agents. Toxicology and Applied Pharmacology 197: 136.
44. McLoughlin SY, Jackson C, Liu JW, Ollis DL (2004) Growth of Escherichia coli coexpressing phosphotriesterase and
glycerophosphodiester phosphodiesterase, using paraoxon as the sole phosphorus source. Applied and
Environmental Microbiology 70: 404-412.
45. McLoughlin SY, Jackson C, Liu JW, Ollis D (2005) Increased expression of a bacterial phosphotriesterase in
Escherichia coli through directed evolution. Protein Expression and Purification 41: 433-440.
46. Barron MG, Woodburn KB (1995) Ecotoxicology of chlorpyrifos. Reviews of Environmental Contamination and
Toxicology, Vol 144. New York: Springer-Verlag. pp. 1-93.
47. Mayer FL, Ellersieck MR (1986) Manual of acute toxicity: interpretation and database for 410 chemicals and 66
species of freshwater animals. Washington, DC: U.S. Department of Interior.

23

Appendix 1: Related Patents

TW7023
TW8498
TW7146
TW8047
TW8167
TW8198

24

Appendix 2: Product label

25

Appendix 3: OpdA (wild-type) protein sequence

Met Pro Ile Gly Thr Gly Asp Leu Ile Asn Thr Val Arg Gly Pro Ile
1
5
10
15
Pro Val Ser Glu Ala Gly Phe Thr Leu Thr His Glu His Ile Cys Gly
20
25
30
Ser Ser Ala Gly Phe Leu Arg Ala Trp Pro Glu Phe Phe Gly Ser Arg
35
40
45
Lys Ala Leu Ala Glu Lys Ala Val Arg Gly Leu Arg His Ala Arg Ser
50
55
60
Ala Gly Val Gln Thr Ile Val Asp Val Ser Thr Phe Asp Ile Gly Arg
65
70
75
80
Asp Val Arg Leu Leu Ala Glu Val Ser Arg Ala Ala Asp Val His Ile
85
90
95
Val Ala Ala Thr Gly Leu Trp Phe Asp Pro Pro Leu Ser Met Arg Met
100
105
110
Arg Ser Val Glu Glu Leu Thr Gln Phe Phe Leu Arg Glu Ile Gln His
115
120
125
Gly Ile Glu Asp Thr Gly Ile Arg Ala Gly Ile Ile Lys Val Ala Thr
130
135
140
Thr Gly Lys Ala Thr Pro Phe Gln Glu Leu Val Leu Lys Ala Ala Ala
145
150
155
160
Arg Ala Ser Leu Ala Thr Gly Val Pro Val Thr Thr His Thr Ser Ala
165
170
175
Ser Gln Arg Asp Gly Glu Gln Gln Ala Ala Ile Phe Glu Ser Glu Gly
180
185
190
Leu Ser Pro Ser Arg Val Cys Ile Gly His Ser Asp Asp Thr Asp Asp
195
200
205
Leu Ser Tyr Leu Thr Gly Leu Ala Ala Arg Gly Tyr Leu Val Gly Leu
210
215
220
Asp Arg Met Pro Tyr Ser Ala Ile Gly Leu Glu Gly Asn Ala Ser Ala
225
230
235
240
Leu Ala Leu Phe Gly Thr Arg Ser Trp Gln Thr Arg Ala Leu Leu Ile
245
250
255
Lys Ala Leu Ile Asp Arg Gly Tyr Lys Asp Arg Ile Leu Val Ser His
260
265
270
Asp Trp Leu Phe Gly Phe Ser Ser Tyr Val Thr Asn Ile Met Asp Val
275
280
285
Met Asp Arg Ile Asn Pro Asp Gly Met Ala Phe Val Pro Leu Arg Val
290
295
300
Ile Pro Phe Leu Arg Glu Lys Gly Val Pro Pro Glu Thr Leu Ala Gly
305
310
315
320
Val Thr Val Ala Asn Pro Ala Arg Phe Leu Ser Pro Thr Val Arg Ala
325
330
335
Val Val Thr Arg Ser Glu Thr Ser Arg Pro Ala Ala Pro Ile Pro Arg
340
345
350

26

Gln Asp Thr Glu Arg


355

27

Appendix 4: OpdA (A900) protein sequence

Met Pro Ile Gly Thr Gly Asp Leu Ile Asn Thr Val Arg Gly Pro Ile
1
5
10
15
Pro Val Ser Glu Ala Gly Phe Thr Leu Thr His Glu His Ile Cys Gly
20
25
30
Ser Ser Ala Gly Phe Leu Arg Ala Trp Pro Glu Phe Phe Gly Ser Arg
35
40
45
Lys Ala Leu Val Glu Lys Ala Val Arg Gly Leu Arg His Ala Arg Ala
50
55
60
Ala Gly Val Gln Thr Ile Val Asp Val Ser Thr Phe Asp Ile Gly Arg
65
70
75
80
Asp Val Arg Leu Leu Ala Glu Val Ser Arg Ala Ala Asp Val His Ile
85
90
95
Val Ala Ala Thr Gly Leu Trp Phe Asp Pro Pro Leu Ser Met Arg Met
100
105
110
Arg Ser Val Glu Glu Leu Thr Gln Phe Phe Leu Arg Glu Ile Gln His
115
120
125
Gly Ile Glu Asp Thr Gly Ile Arg Ala Gly Ile Ile Lys Val Ala Thr
130
135
140
Thr Gly Lys Ala Thr Pro Phe Gln Glu Leu Val Leu Arg Ala Ala Ala
145
150
155
160
Arg Ala Ser Leu Ala Thr Gly Val Pro Val Thr Thr His Thr Ser Ala
165
170
175
Ser Gln Arg Asp Gly Glu Gln Gln Ala Ala Ile Phe Glu Ser Glu Gly
180
185
190
Leu Ser Pro Ser Arg Val Cys Ile Gly His Ser Glu Asp Thr Asp Asp
195
200
205
Leu Ser Tyr Leu Thr Gly Leu Ala Ala Arg Gly Tyr Leu Val Gly Leu
210
215
220
Asp Arg Met Pro Tyr Ser Ala Ile Gly Leu Glu Gly Asp Ala Ser Ala
225
230
235
240
Leu Ala Leu Phe Gly Thr Arg Ser Trp Gln Thr Arg Ala Leu Leu Ile
245
250
255
Lys Ala Leu Ile Asp Arg Gly Tyr Lys Asp Arg Ile Leu Val Ser His
260
265
270
Asp Trp Leu Phe Gly Phe Ser Ser Tyr Val Thr Asn Ile Met Asp Val
275
280
285
Met Asp Arg Ile Asn Pro Asp Gly Met Ala Phe Val Pro Leu Arg Val
290
295
300
Ile Pro Phe Leu Arg Glu Lys Gly Val Pro Pro Glu Thr Leu Ala Gly
305
310
315
320
Val Thr Val Ala Asn Pro Ala Arg Phe Leu Ser Pro Thr Val Arg Ala
325
330
335
Val Val Thr Arg Ser Glu Thr Ser Arg Pro Ala Ala Pro Ile Pro Arg
340
345
350

28

Gln Asp Thr Glu Arg


355

29

Appendix 5: Methyl parathion assay

The activity of LandguardTM A900 was determined spectrophotometrically. A 10-fold dilution series of
LandguardTM A900 was produced in 10 mM Tris-HCl (pH 8.0) from a 0.1 g.mL-1 stock of LandguardTM A900,
covering a range of 10-1,000,000 fold dilution. Duplicate samples of 90 L of each dilution was transferred
to a 96-well microtitre plate and 10 L of a 2 mM solution of methyl parathion (in 100 % methanol) was
added to each well using an 8-channel pipette. The formation of product, paranitrophenol (PNP), was
monitored at 405 nM using a SpectraMax M5 spectrophotometer (Molecular Devices). A reading for each
sample was taken once every 10 seconds for 30 minutes. A standard curve of PNP (0-2 mM) was produced,
and used to determine the rate of hydrolysis in Mol per minute.
1 U of A900 activity is defined as the amount of enzyme required to hydrolyse 1 Mol of methyl parathion
in 1 minute.

30

You might also like