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The Synthesis of Gemcitabine
Kylie Brown, Michael Dixey, Alex Weymouth-Wilson, Bruno Linclau
PII:
DOI:
Reference:
S0008-6215(14)00050-0
http://dx.doi.org/10.1016/j.carres.2014.01.024
CAR 6666
To appear in:
Carbohydrate Research
Received Date:
Revised Date:
Accepted Date:
30 November 2013
27 January 2014
30 January 2014
Please cite this article as: Brown, K., Dixey, M., Weymouth-Wilson, A., Linclau, B., The Synthesis of Gemcitabine,
Carbohydrate Research (2013), doi: http://dx.doi.org/10.1016/j.carres.2014.01.024
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Dextra Laboratories Ltd, The Science and Technology Centre, Earley Gate,
Abstract
Gemcitabine is a fluorinated nucleoside currently administered against a
number of cancers. It consists of a cytosine base and a 2-deoxy-2,2difluororibose sugar. The synthetic challenges associated with the introduction
of the fluorine atoms, as well as with nucleobase introduction of 2,2difluorinated sugars, combined with the requirement to have an efficient process
suitable for large scale synthesis, have spurred significant activity towards the
synthesis of gemcitabine exploring a wide variety of synthetic approaches. In
addition, many methods have been developed for selective crystallisation of
diastereomeric (including anomeric) mixtures. In that regard, the 2-deoxy-2,2difluororibose sugar is one of the most investigated fluorinated carbohydrates in
terms of its synthesis. The versatility of synthetic methods employed is
illustrative of the current state of the art of fluorination methodology for the
synthesis of CF2-containing carbohydrates, and involves the use of fluorinated
Corresponding author
E-mail address: bruno.linclau@soton.ac.uk (B. Linclau)
1
Graphical Abstract
D-glyceraldehyde
NH2
N
cytidine
HO
PO
LG =
O
F
HO F
gemcitabine
acetonide
2-deoxy- D-ribonolactone
OMes, OTs,
OAc, OBz
I, Br,
OTCA
P'O F
LG
F
D-ribose
D-mannose
D-glucose
1,6-anhydro-- D-glucose
Highlights:
* Gemcitabine is a 2,2-difluorinated nucleoside
* The 2-deoxy-2,2-difluorinated ribose has been synthesised by a variety of
approaches
* The sugar fluorination required modified nucleobase introduction
* Extensive efforts to achieve diastereomerically pure intermediates are
described
1. Introduction
Gemcitabine 1 (Figure 1) is a fluorinated nucleoside analogue.1 Originally
developed by Lilly, it is an anticancer drug marketed as the HCl salt under the
trade name of Gemzar (Lilly). Whilst the market for gemcitabine continues to
grow, the recent expiry of the patent, and consequent availability of generics,
has resulted in a decrease in total revenue to below the $1 bn dollar mark
(Table 1).
NH2
N
HO
O
F
HO F
gemcitabine
1
12 month ending
2012
2011
change
2012
2011
change
USA
103.6 405.5
-74.5%
EU top 5
158.8 197
-19.4%
60.3
-27.2%
643
615
4.5%
Latin America
2.4
2.3
4.3%
12
10
16.5%
Rest of World
416.4 446.5
-6.7%
Total
In pancreatic cancer, gemcitabine is administered as the sole agent, but in nonsmall cell lung cancer and bladder cancer, it is given in combination with
cisplatin. In ovarian cancer it is given before carboplatin, and in breast cancer
after
paclitaxel. Gemcitabine is
prodrug; it undergoes
3
intracellular
2. Gemcitabine Synthesis
2.1 The Original Synthesis
The first synthesis of gemcitabine 1 was developed in the Lilly research
laboratories, and was published by Hertel et al in 1988 (Scheme 1).6
HO
BrCF2CO2Et
O
(R)-2
F F
OEt
(65%)
(anti product)
Dowex 50
MeOH, H2O
(94%)
TBDMSO
O TBDMSOTf
F
lutidine, DCM
HO F
4
NHTMS
(92%)
O DIBAL-H
F
(79%)
TBDMSO F
5
NH2
TBDMSO
N
1) N OTMS TMSOTf,
OMs ClCH2CH2Cl, reflux 15h HO
N
O
O
+
F
2) AG 50W-X8 resin,
F
TBDMSO F
MeOH
3) RP-HPLC
HO F
7
(/ 1:1)
1 (10%)
TBDMSO
O
TBDMSO F
6
OH MsCl, Et N
3
F
DCM
(90%)
1
(40%)
D-glyceraldehyde
L-threose
Presumably,
the
recrystallisation
step
after
the
acetonide
BrCF2CO2Et
COOEt
Zn, THF, Et 2O
BzO
BzO
(31%)
OH
TFA, H2O
reflux;
O F F
HO F
10
11
O
F
2 steps
OH
F
OBz
BzO F
OBz
recrystallisation
(48%)
OH
BzO
O
In addition to ethyl bromodifluoroacetate as fluorinated building block, 2-deoxy2,2-difluororibose has also been synthesised using Reformatsky-type reactions
with other reagents (Scheme 3). Treatment of bromodifluoroacetylene 12 with
zinc, followed by reaction with
D-glyceraldehyde
(1) O
O
(R)-2
Zn, THF
OH
(50%)
(2)
(R)-2
Zn, THF
C 5H11
3) O3, MeOH;
Me2S
anti-13
OR
OH
17
(3.3:1 anti/syn)
14 (R = H)
Ac2O, Et3N,
DMAP
15 (R = Ac)
(23% from anti-13)
1) O3, CH 2Cl2;
Na2S2O3, H2O
F F
OR
F
F
RO
13 (3:1 anti/syn)
Chroma
tography
BrCF2CH=CH2
16
1) Pd-BaSO4
2) 10% HCl, MeOH
F F
2) H 2O, CH 3CN
3) Crystallisation
(EtOAc)
OH
F
F
HO
OH
14
(11% from (R)-2)
side
reaction
(eq
1).17
However,
starting
from
t-butyl
O
H
F
OLi
OEt
//
OEt
F
18
O
H
F
LDA
S
OLi
St-Bu (eq 2)
Toluene
F
24
1. TMSCl
2. LDA
O
S
OSiMe3
F
St-Bu (eq 3)
THF
F
20
25
O
I
F
23
19
H
F
(eq 1)
OR
F
21 R = Me
22 R = Et
1. Zn
2. R'3SiCl
CH3CN
OSiR'3
F
OR
(eq 4)
F
26 R = Me, R' = Me
27 R = Me, R' = Et
28 R = R' = Et
The reaction of reagents 2428 with glyceraldehyde acetals 2ac was shown to
proceed with high to very high selectivity (Table 2). Unfortunately, the reported
selectivities resulting from different methods are not always comparable due to
the use of different glyceraldehyde protecting groups, which are known to alter
the stereoselectivity of addition reactions to the aldehyde group.
Reaction of 2b with the lithium enolate 24 proceeded in 85:15 anti:syn ratio in
moderate yield (entry 1).17 Using the ketene trimethyl silyl acetal 28, a low yield
of 29a was obtained, if in an enhanced 9:1 ratio (entry 2).10 This yield was much
improved by using the corresponding 27, which gave 30a in 74% yield with the
same anti:syn ratio (entry 3).
The same methodology was applied starting from ethyl iododifluoroacetate 22
instead of the corresponding methyl ester 21 to give the silyl ketene acetal 28.
The resulting product 30c was obtained in a lower ratio despite a
cyclohexylidene acetal protected glyceraldehyde 2c was used (entry 4).18 This
10
O
2
Reactant
O
Aldehyde
R
O
F F
X
Reactant
Lewis-acid
F F
X
OR' O
Product
(equiv)
OR' O
a R = Me
b R = Et
c R = -(CH2)5-
Entry
R
O
Yield
Ref
(anti:syn)
2b
24
31b
17
2a
26
29aa
46% (9 : 1)
10
2a
27
30aa
74% (9 : 1)
10
2c
28
30c
18
2c
28
BF3OEt2 (1)
29c
47% (91 : 9)
18
2c
28
Me2AlCl (1)
29c
18
2c
28
TiCl4 (1)
29c
18
2c
28
Cp2TiCl2 (0.1)
30c
18
2c
28
Cp2TiCl 2 (1)
30c
68% (>95 : 5)
18
10
2c
28b
Cp2TiCl2 (0.1)
30c
92% (91 : 9)
18
11
2c
28b
Cp2TiCl 2 (1)
30c
84% (>95 : 5)
18
12
2b
25
BF3OEt2 (2)
31b
74% (95 : 5)
17
The reactions involving the ketene silyl acetals 2628 (entries 24) are formally
Mukaiyama aldol reactions, and these were achieved without the addition of a
11
Lewis-acid. It was thought that the in-situ formed ZnI2 was responsible for
activating the aldehyde group.
Matsumura investigated the influence of Lewis acid addition.18 In the presence
of BF3OEt2, a similar anti/syn selectivity was obtained, but in lower yield (entry
5). The use of Me2AlCl gave an excellent yield, but much reduced selectivity
(entry 6), while TiCl4 gave a reasonable yield with restored levels of
diastereoselectivity (entry 7). However, much improved selectivities were
achieved when adding a bulky Lewis acid. Hence, with catalytic amounts of
Cp2TiCl2 (entry 8), both yield and diastereoselectivity were enhanced.
Interestingly, a stoichiometric amount of the Lewis-acid further improved the
diastereoselectivity, but led to a decrease in yield (entry 9). For the same
process, but starting from ethyl bromodifluoroacetate instead of ethyl
iododifluoroacetate, identical diastereoselectivities but better yields were
obtained (entries 10,11). However, a significant drawback of this process for
use on large scale is the much higher molecular weight of the Lewis acid
compared to the reactants. Finally, Weigel also achieved very high
diastereoselectivities when using BF3OEt2 in the reaction mediated by the
ketene silyl O,S-acetal 25 (entry 12).17 All syn and anti diastereomeric mixtures
reported above were separable by column chromatography.
All
fluorinated
reagents
described
thus
far
are
achiral,
with
the
auxiliaries
(Scheme
5).19
Unfortunately,
no
precise
diastereoselectivity was described for the formation of 33, though the obtained
product could be used in the next step without purification. Interestingly,
12
reaction
of
an
analogous
non-fluorinated
acetate-derived
homochiral
thiazolidinethione reagent with 2a was reported to give a 13:1 ratio of antiadduct when PhBCl2/sparteine were used to effect enolisation (not shown).20
Y
X
TiCl4
TMEDA
O
F
+ 2a
F
Ph
32
Y
X
DCM
67 - 79%
OH
N
F F
Ph
33
X,Y =
O,O; O,S; S,S
13
1) Dowex 50
MeOH, H2O
F F
OEt
O
Et 3SiO
2) TBDMSOTf
2,6-lutidine
OMe
O
N
OAc
F
F
OAc
(82%)
1) BzCl, Et3N
2) TsOH, MeOH
OH
F F
3) Ac2O, Et3N
30a (X = OMe)
AcO
O
O
Ph
3) BzCl, Et3N
4) NaBH4, EtOH
O
F
TBDMSO F
1) DIBAL-H, Et2O
2) TFA, H2O
F F
Et3SiO
(85%)
30c
TBDMSO
15
BzO
O
OH
F
BzO F
34
33
X,Y =
O,O; O,S; S,S
F F
BzCl, lutidine
OEt
OH O
3
(ratio not specified)
DMAP, DCM
(96%)
OH F F
F F
OEt
OBz O
35
Dowex 50
HO
MeOH, H2O
OEt
OBz O
36
BzO
BzCl, py
BzO
t
O
O
OH
O LiAl(O Bu)3H
O DMAP, EtOAc
F
F
F
then recryst
Et2O, THF
(26%)
BzO F
BzO F
BzO F
(~quant)
37
38
34
HO
azeotropic
distillation
(~quant)
It was mentioned that the lactone group in 38 was easily solvolysed, requiring
great care for the crystallisation. In fact, chromatographic separation was not
possible due to silica-gel mediated ring opening.
In the same publication, Chou established lithium t-butoxyaluminium hydride as
a superior lactone reducing agent to give the lactol 34. In contrast to reaction
with DIBAL-H, no over-reduction with remaining starting material was observed.
HO
O
(1)
F F
AcOH, CH3CN
OEt
toluene, reflux
OH O
3
(3:1)
O
F
HO F
4
(3:1)
(2)
F F
TFA, H2O
OEt
OH O
3
(3:1)
CH3CN, toluene
reflux
2) crystallisation
(add EtOAc, hexane)
(46% from 3)
HO
O
1) 3-F-BzCl,
DMAP, py, EtOAc
O
F
HO F
4
(3:1)
1) p-TolCl,
DMAP, py, EtOAc
2) recrystallisation
(toluene/hexane)
(25% from 3)
3-F-BzO
O
O
F
3-F-BzO F
39
(>98% purity)
p-TolO
O
O
F
p-TolO F
40
(>99% purity)
Other substituted benzyl groups, for example p-toluoyl, were also shown to be
suitable, albeit in a lower overall yield (Scheme 8 (2)).23
Kim et al developed a separation procedure before cyclisation to the lactone
stage (Scheme 9).24 The 3:1 diastereomeric mixture of 3 was protected as the
p-phenylbenzoate 41, before ester hydrolysis to form the potassium salt.
Removal of a third of the solvent volume in vacuo resulted in precipitation of the
desired anti diastereomer 42 in 70% yield, contaminated with only 0.1% of the
syn-byproduct.
Cyclisation
and
5-O-benzoylation
gave,
after
another
16
PhBzCl, Et3N
F
OEt
HO
DCM
(98%)
F
OEt
PhBzO
O
41
(3:1 anti/syn)
3
(3:1 anti/syn)
K2CO3, H2O
THF, MeOH
1) HCl, MeCN
F
2) BzCl, py
then precipitate
O-K+
PhBzO
(72%)
(70%)
O
42
(<0.1% syn)
BzO
BzO
O
PhBzO F
43
t
O LiAl(O Bu)3H
F
THF
OH
F
PhBzO F
44
17
1)
HO
Ph
O
O
F
HO F
4
Cl
CinO
O
pyridine
2) recrystallisation
from toluene
(43%)
O
F
CinO F
45
HO
1) PhNCO, DMAP
toluene
(95%)
3
2.6:1 anti/syn
OEt 2) recrystallisation
from toluene
(26%)
O
O
PhHN
OEt
O
46
(purity >98.5%)
HO
TFA, CH3CN/H2O
reflux
then azeotropic
distillation from
toluene
(98%)
O
PhHN
O
F
O F
47
18
NH2
1)
O
O
3
3:1 anti/syn
Et3N
(88%)
BzO
1) HCl, MeCN;
toluene, distill
F
H
N
O
50
NaCN
O
(cat)
2) recrystallisation
(hexane/EtOAc)
(54%)
OEt
HO
BzCl
48
Ph
Ph
2) NapCl, py;
then recryst
(hexane/EtOAc).
(70%)
HO
H
N
O
Ph
49
(de >99%)
NapO
O
O
F
BzO F
51
(99.8% purity)
HO
TIPSO
O
TIPSCl
imidazole
(92%)
HO
52
O
F
-78 C
(71%)
TIPSO
54
NFSI
LiHMDS
-78 C
(72%)
TIPSO
53
NFSI TIPSO
LiHMDS
TIPSO
O
F
TIPSO F
55
TIPSO
DIBAL-H
toluene
-78 C
(91%)
OH
F
TIPSO F
56
21
pCl-BzO
O
pCl-BzO
NFSI
LiHMDS
pCl-BzO
O
THF, -78C
(65%)
57
58
TBDMSO
O
TBDMSO
O
NFSI
LiHMDS
O
F
TBDMSO
60 (58%)
TBDMSO
59
F
61
TBDPSO
N3
BnO
NFSI
LiHMDS
THF, -78C
(16%)
62
Scheme
TBDPSO
N3
O
F
BnO
63
14.
Electrophilic
fluorinations
on
differently
protected
2-
deoxylactones.29
Instead, Sauve and Cen postulated that increasing the steric bulk of the
protecting group at 3-OH would force the ring conformation such that O3 is in a
pseudoequatorial position, lowering its propensity for elimination. An MM2
minimisation of the lithium enolate of 53 confirmed this.
22
nucleobase introduction. The use of DAST alone in the fluorination step was
reported to give low yields.
BzO
O
OAc
BzO
then precipitate
(heptane)
(59%)
BzO OBz
64
DAST/HFEt3N BzO
DCM, -5 C, 12 h;
BzO
Dess-Martin
O
OBz
BzO OH
OBz recrystallisation
(hexane, 05 C)
BzO O
(65%)
66
DCM
(95%)
65
BzO F
F
OBz
67
HO
HO
Ph
OH
OH
O
68
PhCH(OMe)2
OMe
PTSA, DMF
(95%)
OBz
1. HCl, EtOH
2) Bz2O, py
(85%)
BzO
F
F
OMe
72
Ph
O
O
O
69
BuLi
Ph
O
OMe
1) PhSeH, BF3OEt2
DCM (72%)
2) tBuOOH, Ti(OiPr)4
DCM (72%)
O
O
THF
(84%)
DAST
O
O
OMe
70
73
O
F
OMe
71
BzO
1) O3, DCM; Me2S
2) NH3, MeOH
O
O
F
DCM
(70%)
OBz
BzO
F
Ph
(48%)
OH
F
BzO F
34
Reaction of 70 with DAST gave the 2,2-difluorinated 71 in 70% yield. The 4,6di-O-benzylidene acetal was then hydrolysed to allow the desired benzoate
protection. Conversion of the anomeric methyl acetal to the corresponding
23
D-glucose
Ph
4 steps
O
O
DAST
DCM, rt
(60%)
O BnO OBn
74
OBz
Ph
O
O
F
1) HCl, EtOH
BzO
2) Bz2O, py
F PO OBn
(90%)
75 (P = Bn)
Pd/C
(59%)
BzO
1) NaIO4
O
F
F HO
77
F PO OBn
76 (P = Bn)
BzO
OBz
H2
O
F
OH
2) NH3,
MeOH
(43%)
OH
F
BzO F
34
reported that when the methyl glycoside derivative was used, anomeric
deprotection was low-yielding.
Interestingly, the DAST-mediated fluorination of 3-uloses was first studied in
benzene, which gave lower yields of the corresponding difluorosugars (40-48%,
not shown). This was found to be due in part to the formation of the Grobfragmentation product 83, the proposed mechanism of which is shown in
Scheme 18.36
Ph
O
O
Ph
DAST
R1
O BnO R2
O
O
O
benzene Et NSF
2
2
reflux
78 R1 = OMe, R2 = H
79 R1 = H, R2 = OMe
Ph
O
O
OH
F
83
R1
O R2
F Bn
80,81
work-up
Ph
O
O
OMe
O
F Bn
82
25
HO
OH
OH
84
O
MeO
DMAP, DCM
(98%)
TMSO
OH
1) DMP, DCM
OTMS 2) K2CO3, MeOH
(97%)
DAST/
HFDMPU
DCM
(92%)
NaH, MeI
OH Et3N, MeCN
(96%)
86
OH
MeO
HO
85
OMe
O
87
TMSCl, Et 3N,
HCl, H 2O
OMe
dioxane
HO
F F
F F
89
88
OH
O
NaIO4
OH dioxane,
(68%, 2 st)
OH
F
F
HO
OH
14
26
O
(1)
OH
F
F
HO
OH
14
O
(2)
OH
14
TrO
pyridine
50 C, 20 h
47%
(19% after
chromatography)
OH
F
F
HO
TrCl
OH
F
HO F
90
AcO
Et 3N, DMAP, DCM;
AcCl, DCM
(slow addition),
rt, overnight
(95%)
OAc
F
AcO F
91
27
in excellent yield.38 The lactone is water-soluble, and was obtained in pure form
after several lyophilisation cycles.
OH
F
F
HO
Electrolysis,
CaBr2, CaCO3, H2O
(99%)
HO
or
Ba(OBz)2, Br2, H2O
(85%)
OH
14
O
F
HO F
4
NH2
NH-o-Tol
N
HO
N
O
1) o-TolCl, py (88%)
HO OH
Cytidine
o-TolO
2) KOt-Bu,
THF, -78 C
(74%)
o-TolO OH
92
NH2
N
1) PDC, Ac2O (82%)
2) DAST, HFpy (~35%)
3) NaOMe, MeOH
(no yield given)
HO
O
F
HO F
1
1)
HO
1) BzCl (63%)
2) 0.1 N HCl (48%)
O
OH
O
O
HO
3) PhOCH2COCl
(81%)
BzO
94
OBz
BzO
95
OPh
2) H2NNH 2 (80%)
3) TEMPO, NaOCl (88%)
O
NH2HCl
N
DAST
TMSOTf,
ClCH2CH2Cl,
OTMS 80 C,16h
(91%)
NHAc
N
O
OBz
BzO O
93
BzO
PhO
O
NHAc
NHTMS
O
HFpy
48h, rt
(38%)
BzO
O
F
OBz
BzO F
N
O
1) 7N NH3, MeOH
(quant)
2) NaIO4, H2O; NaBH4
(76%)
96
HO
O
O
F
HO F
1HCl
29
Hence this reaction has been subject to extensive optimisation, not only with
regard to yield/conversion, but also to anomeric selectivity. The selected
coverage in this review is focused on the various donor systems that have been
used to achieve nucleobase introduction. Many crystallisation protocols have
been described in order to obtain gemcitabine, or its hydrochloride salt, in high
anomeric purity. However, though some examples of crystallisation protocols
are given, comprehensive coverage of the anomeric purification protocols falls
outside the scope of this review.
30
NHTMS
BzO
BzO F
34
BzO
OH MsCl, Et N
3
F
DCM
OMs
F
BzO F
97
BzO
N
N
O
OTMS
TMSOTf, DCE
reflux
NH2
N
F
BzO F
98
N
O
NH2
HO
NH3, MeOH;
HCl, i-PrOH
HO F
(49%, 3 st)
NH2
N
F
N
O
Neutralisation
and
N
HO
O
.HCl
selective
crystallisation
O
F
HO F
1HCl
(47:53 /)
31
BzO
O
OMs
F
O
PhHN
O F
99
32
NH2
N
NHTMS
BzO
OH MsCl, Et N
3
F
DCM
PhBzO F
(83%)
44
BzO
OMs
F
PhBzO F
100 (2.5:1 /)
NH2
TMSOTf,
toluene, BzO
OTMS reflux;
then 2N HCl,
recryst from EtOH
(55%)
N
O
F
PhBzO F
101 (35:1 /)
NH 3
MeOH
(89%)
HO
O
F
HO F
1
(97% purity)
33
NHAc
CinO
O
O
F
CinO F
45
1) LiAl(OtBu)3H
THF, -10 C
CinO
N
N
H
HMDS
CinO
OTs
F
TMSOTf, DCE
reflux
CinO F
2) TsCl, Et3N,
toluene
(62%, 2 steps)
102
then filtration
CinO
O
O
F
CinO F
N
O
CinO F
103
(1:1 ratio)
NHAc
5% NaHCO3 (aq)
N
N
F
O
TMS
NH2
NH3, MeOH;
1 N HCl, acetone
N
HO
O
then crystallised
from acetone/water
O
F
.HCl
HO F
(80%)
1HCl
(99.8% pure)
104 (47%)
The unstable 103 was not isolated, but hydrolysed to give the N-acetyl
protected cytidine derivative 104. The -anomer was found to precipitate from
the reaction mixture, allowing its removal by filtration, giving the desired anomer. This material was subsequently deprotected with NH3 and converted to
the gemcitabine HCl salt. Recrystallisation from acetone/water furnished the
gemcitabine HCl salt with a purity of 99.8%.
A variation on this process was published by Zelikovitch et al,45 where
employing a different solvent combination after nucleobase introduction caused
precipitation of both anomers (Scheme 27). In this way a mixture of 104 was
obtained (99% yield) containing 73% -anomer and 12% -anomer. After
deprotection of the cinnamoyl groups, recrystallisation from acetone/water,
provided the anomer of gemcitabineHCl in 99.6% purity.
34
NH2
NH2
NHTMS
CinO
OTs
F
CinO F
TMSOTf,
N
DCE,
N
OTMS reflux
then remove DCE,
add EtOAc, aq NaHCO3
99% (crude)
102
N
CinO
O
F
CinO F
104
73.3%
11.8%
1. NH3, MeOH
2. 0.5 N HCl, DCM
3. recrystallisation from
acetone/H2O
HO
O
F .HCl
HO F
1HCl
(99.6% )
BzO
O
OH
F
BzO F
Ac2O
Et3N
(85%)
BzO F
106
(1.19:1 /)
34
NH2
NHTMS
SnCl4,
N
DCE,
N
OTMS 83 C
(~80% conversion)
then trituration
(2:1 heptane/
ethyl acetate)
OAc
F
NH
BzO
O
O
F
BzO F
98
(97.5:2.5 /)
In a similar vein, Chen reported a nucleobase introduction from the tri-Obenzoate 67 (Scheme 29),32 leading to 98 in excellent yield and anomeric ratio
after a crystallisation procedure.
35
NH 2
NHTMS
BzO
BzO F
67
F
OBz
OTMS
NH 2
SnCl4, MeCN
reflux, 12 h
BzO
O
NH3, MeOH;
HCl (conc), IPA
N
HO
then recrystallisation
from H2O
(87%)
F
BzO F
O
F
HO F
98
(: 99:1)
BzO
BzO
O
OH
F
PhBzO F
44
ClPO(OPh)2,
O
P(OPh)2
NHTMS
BzO
HBr
Et3N
AcOH
PhBzO F
recrystallisation
i-PrOH/H 2O (3:1)
(77% from 44)
107
(/ 1:10.8)
recrystallisation
i-PrOH
(82%)
(<2% )
NH2
N
F
101
(5.5:1 /)
108
(/ 10.8:1)
OTMS
C7H16/C 8H18
Ph2O,
140-150 C
(92%)
(<0.3% )
N
O
PhBzO F
PhBzO F
F
Br
NH2
N
BzO
1) NH 3, MeOH
HO
2) extraction/evaporation/
crystallisation (H2O)
(65%)
O
F
HO F
1
(<0.02% )
A key feature of the process was the synthesis of the donor in anomerically
pure form. The required bromide was obtained by first phosphorylating the
36
37
38
TrO
O
I
F
Conditions A:
NHTMS
Conditions B:
BzO F
O
OTMS
NHTMS
(NH4)2S2O8 (1 equiv)
CH3CN, 80 C
109
NH2
TrO
OTMS
Ph
110
NHTMS
OMs
F
O
PhHN
O F
OTMS
O
F
anisole, NaI
110 C, 16 h
112
N
TBDMSO
BzO F
111
Conditions A: 5.6:1 /
(quant)
Conditions B: 18.0:1 /
NH2
TBDMSO
F
O O
N
N
TrO
O
PhHN
O F
113
2:1 /
Nucleobase introduction starting from the mesylate 112 in the presence of NaI
also gives an increased -ratio.13 Presumably this reaction proceeds via the
corresponding
anomeric
iodide,
and
may
involve
neighboring
group
participation as well.
39
NHAc
N
PO
O
OH
F
Cl3CCN,
(i-Pr)2EtN
PO
-10 - 0 C
BzO F
OTMS
O
F
CCl3
OTMS
TMSOTf,
DCE, reflux
NH
BzO F
O
F
BzO F
115
34 P = Bz
114 P = p-MeOC6H 4NHCO
PO
116 (89%)
117 (76%)
118,
synthesised
from
the
O
1)
AcO
O
AcO F
91
OAc
F
CN
N
H
N(TMS)2
118
AcO
O
AcO F
N
F
CN
NH2
O
119
40
2) NaOEt, i-PrOH
3) chromatography
(12% from 118)
HO
O
O
F
HO F
1
TBDMSO
TBDMSO
O
TBDMSO F
7
OMs
F
LiN3
DMF
(95%)
TBDMSO F
N3
F
5% Pd/C
40 psi
EtOH
(96%)
120
TBDMSO
O
NH2
F
TBDMSO F
121
Nagarajan, from the Lilly labs, developed a process to recover 2-deoxy-2,2difluororibose from the unwanted -anomer of Gemcitabine (Scheme 35).38 In
order to remove the nucleobase group by hydrolysis at the anomeric centre, a
process disfavoured by the presence of the fluorination at the C2 position, the
pyrimidine ring was first partially hydrogenated using a PtO2 catalyst at medium
hydrogen gas pressure to give 122. This then enabled acid-catalysed hydrolysis
using strong mineral acid at high temperature (steam bath), yielding the 2deoxy-2,2-difluororibose sugar 14. Purification is necessary, and this can be
achieved by column chromatography and recrystallisation (80% yield from 1),
or alternatively, by acetylating the crude reaction mixture to give the triacetate
15, followed by deprotection and recrystallisation. However, this second
procedure leads to difluororibose in only 28% overall yield.
HO
H 2, PtO2
4 atm
O
F
N
HO F
1
AcOH, EtOH
N
NH2
HO
O
F
1N HCl
H2O, T
HO
N
HO F
122
OH
F
F
HPLC &
recrystallisation
(80% from 1)
Ac2O, py;
then recryst.
(45%)
AcO
OH
F
F
HO
OH
14
OH
14 (crude)
NH2
OAc
F
F
Et 3N, H 2O
MeOH
(63%)
AcO
15
2.7 Conclusion
This review illustrates how the quest for an efficient, scalable synthesis of
gemcitabine has spurned enormous synthetic efforts towards 2-deoxy-2,2difluororibose and its nucleobase introduction. It provides a nice overview of the
different strategies for CF2-introduction in a sugar moiety: a building block
42
Acknowledgements
KB thanks Dextra Laboratories and the EPSRC for a studentship.
C. K., J. Med. Chem. 1997, 40, 36353644; b) Xiang, Y.; Kotra, L. P.; Chu, C.
K.; Schinazi, R. F. Bioorg. & Med. Chem. Lett. 1995, 5, 743748.
12
Hubschwerlen, C. Synthesis 1986, 962964.
13
Lin, K.-C.; Li, W.; Lin, C.; Wein, Y.; Lai, Y.; Kao, K.-H.; Lu, M.-Y. WO119347,
2006.
14
a) Noe, C. R,; Jasic, M.; Kollmann, H.; Saadat, K. WO009147, 2007; b) Noe,
C. R,; Jasic, M.; Kollmann, H.; Saadat, K. US0249119, 2008. Note: no
stereochemistry was indicated in the patent and yields were calculated from
crude masses provided.
15
Hanzawa, Y.; Inazawa, K.; Kon, A.; Aoki, H.; Kobayashi, Y. Tetrahedron Lett.
1987, 28, 659662.
16
Wirth, D. D. EP0727432, 1996.
17
Weigel, J. A. J. Org. Chem. 1997, 62, 61086109.
18
Matsumura, Y.; Fujii, H.; Nakayama, T.; Morizawa, Y.; Yasuda, A. J. Fluorine
Chem. 1992, 57, 203207.
19
Shen, X.; Liao, L.; Lin, F.; He, X.; Yang, J.; Zhan, H. CN101469010, 2009.
Note: the D-glyceraldehyde acetonide starting material was shown with the
wrong absolute configuration, and the addition product shown as the syndiastereomer. See also INMU00450, 2008.
20
Zhang, Y.; Sammakia, T. J. Org. Chem. 2006, 71, 62626265.
21
Chou, T. S.; Heath, P. C.; Patterson, L. E.; Poteet, L. M.; Lakin, R. E.; Hunt,
A. H. Synthesis 1992, 565570.
22
Kim, M.-S.; Kim, Y.-J.; Choi, J.-H.; Lim, H.-G.; Cha, D.-W. US0281301, 2009.
23
Example: Potluri, R. B.; Venkata Subramanian, H.; Betini, R.; Gunturu, S.
WO095359, 2006.
24
a) Chang, Y.-K.; Lee, J.; Park, G.-S.; Lee, M.; Park, C. H.; Kim, H. K.; Lee,
G.; Lee, B.-Y.; Baek, J. Y.; Kim, K. S. Tetrahedron 2010, 66, 56875691; b)
Lee, J.; Park, G.-S.; Lee, M.; Kim, C.-K.; Lee, J.-C.; Chang, Y.-K.; Lee, G.-S.
WO009353, 2006.
25
a) Xu, Y.; Yang, H.; Hou, W. US0179314, 2010.
26
(a) Jiang, X.; Li, J.; Zhang, R.; Zhu, Y.; Shen, J. Org. Proc. Res. & Dev. 2008,
12, 888891; (b) See also Shen, J.; Li, Y.; Kaspi, J. WO027564, 2007.
27
Naddaka, V.; Klopfer, E.; Saeed, S.; Montvilisky, D.; Arad, O.; Kaspi, J.
WO070804, 2007.
28
Park, S.-J.; Oh, C.-R.; Kim, Y.-D. WO117955, 2008.
29
Cen, Y.; Sauve, A. A. J. Org. Chem. 2009, 74, 57795789.
30
Cen, Y.; Sauve, A. A. Nucleos. Nucleot. Nucl. 2010, 29, 113122.
31
McAtee, J. J.; Schinazi, R. F.; Liotta, D. C. J. Org. Chem. 1998, 63, 2161
2167.
32
Gong, C. CN101628927A, 2010.
33
a) Brodfuehrer, P. R.; Sapino, C., Jr.; Howell, H. G. J. Org. Chem. 1985, 50,
25972598; b) Howell, H. G.; Brodfuehrer, P. R.; Brundidge, S. P.; Benigni, D.
A.; Sapino, C., Jr. J. Org. Chem. 1988, 53, 8588.
34
Fernandez, R.; Matheu, M. I.; Echarri, R.; Castillon, S. Tetrahedron 1998, 54,
35233532.
35
Horton, D.; Weckerle, W. Carbohydr. Res. 1975, 44, 227240.
36
El-Laghdach, A.; Echarri, R.; Matheu, M. I.; Barrena, M. I.; Castillon, S.;
Garcia, J. J. Org. Chem. 1991, 56, 45564559.
44
37
45
12 month ending
2012
2011
change
2012
2011
change
USA
103.6 405.5
-74.5%
EU top 5
158.8 197
-19.4%
60.3
-27.2%
643
615
4.5%
Latin America
2.4
2.3
4.3%
12
10
16.5%
Rest of World
416.4 446.5
-6.7%
Total
http://thomsonreuters.com/cortellis-for-competitive-intelligence/
O
2
Reactant
O
Aldehyde
R
O
F F
X
OR' O
a R = Me
b R = Et
c R = -(CH2)5-
Entry
R
O
Reactant
Lewis-acid
F F
X
OR' O
Product
(equiv)
Yield
Ref
(anti:syn)
2b
24
31b
17
2a
26
29aa
46% (9 : 1)
10
2a
27
30aa
74% (9 : 1)
10
2c
28
30c
18
2c
28
BF3OEt2 (1)
29c
47% (91 : 9)
18
2c
28
Me2AlCl (1)
29c
18
2c
28
TiCl4 (1)
29c
18
2c
28
Cp2TiCl2 (0.1)
30c
18
2c
28
Cp2TiCl2 (1)
30c
68% (>95 : 5)
18
10
2c
28 b
Cp2TiCl2 (0.1)
30c
92% (91 : 9)
18
11
2c
28 b
Cp2TiCl2 (1)
30c
84% (>95 : 5)
18
12
2b
25
BF3OEt2 (2)
31b
74% (95 : 5)
17