BM1000 Lecture 5 6 Per Page

Organic Molecules
CHAPTER 3 • A cell is mostly water.
The Molecules of Life. – The rest of the cell consists mostly of carbon-
based molecules.
Sugars, proteins, fats & – Organic chemistry is the study of carbon
compounds.
nucleic acids
PowerPoint® Lectures for
Essential Biology, Third Edition
– Neil Campbell, Jane Reece, and Eric Simon
Essential Biology with Physiology, Second Edition
– Neil Campbell, Jane Reece, and Eric Simon
Lectures by Chris C. Romero

Copyright © 2007 Pearson Education Inc., publishing as Pearson Benjamin Cummings Copyright © 2007 Pearson Education Inc., publishing as Pearson Benjamin Cummings
Carbon Chemistry
• Carbon is a versatile atom.
– It has four electrons in an outer shell that holds
eight.
– Carbon can share its electrons with other atoms to

form up to four covalent bonds.
– Carbon can use its bonds to:-
Attach to other carbons.
Form an endless diversity of carbon skeletons.
Figure 3.2
Copyright © 2007 Pearson Education Inc., publishing as Pearson Benjamin Cummings
• The simplest organic compounds are hydrocarbons.

– These are organic molecules containing only
carbon and hydrogen atoms.
– The simplest hydrocarbon is methane.
Figure 3.3
1
Larger hydrocarbons are the main molecules in the gasoline we burn
in our cars.
• Each type of organic molecule has a unique three-
The hydrocarbons of fat molecules provide energy for our bodies.
dimensional shape that defines its function in an
organism.
– The molecules of your body recognize one
another based on their shapes.
• The unique properties of an organic compound

depend not only on its carbon skeleton but also on
the atoms attached to the skeleton.
– These atoms are called functional groups.
Figure 3.4
Giant Molecules from Smaller Building Blocks

• On a molecular scale, many of life’s molecules are
gigantic.
– Biologists call them macromolecules.
– Examples: DNA, carbohydrates
• Most macromolecules are polymers.

– Polymers are made by stringing together many
smaller molecules called monomers.
– Cells link monomers by dehydration reactions.
Figure 3.5
Organisms also have to break down

macromolecules.
Cells do this by a process called hydrolysis.
Figure 3.6a Figure 3.6b
2
Biological Molecules Carbohydrates
• There are four categories of large molecules in • Carbohydrates include:
cells:
– Small sugar molecules in soft drinks
– Carbohydrates
– Long starch molecules in pasta and potatoes
– Lipids
– Monosaccharides
– Proteins
• Monosaccharides are simple sugars.
– Nucleic acids
– Glucose is found in sports drinks.
– Fructose is found in fruit.
• Honey contains both glucose and fructose.

• The monosaccharides glucose and fructose are

isomers.
– They have the same formula, but their atoms are
arranged differently.
Figure 3.8
In aqueous solutions, monosaccharides form rings. Disaccharides

Monosaccharides are the main fuel that cells use for cellular work.
• A disaccharide is a double sugar.
– It is constructed from two monosaccharides.
• Disaccharides are joined through a dehydration

reaction.
Figure 3.9
3
• Lactose is another type of disaccharide.
– Some people have trouble digesting lactose, a
condition called lactose intolerance.
• The most common disaccharide is sucrose,

common table sugar.
– It consists of a glucose linked to a fructose.
– Sucrose is extracted from sugar cane and the roots

of sugar beets.
Figure 3.10
Polysaccharides
Complex carbohydrates are called polysaccharides. They are long
chains of sugar units. They are polymers of monosaccharides. • One familiar example of a polysaccharide is starch.
– Plant cells store starch for energy.
– Potatoes and grains are major sources of starch in
the human diet.
• Animals store excess sugar in the form of a

polysaccharide called glycogen.
– Glycogen is similar in structure to starch.
Figure 3.13
• Cellulose is the most abundant organic compound • Most animals cannot derive nutrition from fiber.
on Earth.
– Grazing animals survive on a diet of cellulose
– It forms cable-like fibrils in the tough walls that because they have prokaryotes in their digestive
enclose plants. tracts that can break down cellulose.
– It is a major component of wood.

– It is also known as dietary fiber.
4
Lipids Lipids are hydrophobic.
They do not mix with water.
• Simple sugars and double sugars dissolve readily in Examples: fats and steroids
water.
Fats Dietary fat consists largely of the molecule triglyceride.
– They are hydrophilic, or “water-loving.”
Triglyceride is a combination of glycerol and three fatty acids.
• Lipids are hydrophobic.

• They do not mix with water.
• Examples: fats and steroids
Figure 3.15a
• Fats perform essential functions in the human • Unsaturated fatty acids

body:
– Have less than the maximum number of
– Energy storage hydrogens bonded to the carbons.
– Cushioning • Saturated fatty acids

– Insulation – Have the maximum number of hydrogens bonded
to the carbons.
• Most animal fats have a high proportion of

saturated fatty acids, which can be unhealthy.
– Example: butter
• Most plant oils tend to be low in saturated fatty

acids.
– Example: corn oil
• Not all fats are unhealthy.

– Some fats perform important functions in the
body and are essential to a healthy diet.
Figure 3.15b
5
Steroids
• Steroids are very different from fats in structure
and function.
– The carbon skeleton is bent to form four fused
rings.
• Cholesterol is the “base steroid” from which your

body produces other steroids.
– Example: sex hormones
Figure 3.17
Proteins
• Synthetic anabolic steroids are controversial. • A protein is a polymer constructed from amino acid
monomers.
– They are variants of testosterone.
• Proteins perform most of the tasks the body needs
to function.
• Some athletes use anabolic steroids to build up
their muscles quickly. Structural Proteins Receptor Proteins
Storage Proteins Enzymes
– However, these substances can pose serious
health risks. Contractile Proteins Hormonal Proteins
Transport Proteins Sensory Proteins
Defensive Proteins Gene Regulatory

Proteins
The Monomers: Amino Acids

• All proteins are constructed from a common set of
20 kinds of amino acids.
• Each amino acid consists of

– A central carbon atom bonded to four covalent
partners.
– A side group that is variable among all 20
Figure 3.20
6
Proteins as Polymers
• Cells link amino acids together by dehydration
reactions.
– The resulting bond between them is called a
peptide bond.
Figure 3.21
• Your body has tens of thousands of different kinds • A slight change in the primary structure of a
of protein. protein affects its ability to function.
– The arrangement of amino acids makes each one – The substitution of one amino acid for another in
different. hemoglobin causes sickle-cell disease.
• Primary structure
– The specific sequence of amino acids in a protein
Protein Shape
• Proteins have four levels of structure.
Primary Protein Structure

Secondary Protein Structure
Tertiary Protein Structure
Quaternary Protein Structure
Figure 3.23
7
What Determines Protein Structure?
• A protein’s shape is sensitive to the surrounding
environment.
– Unfavorable temperature and pH changes can
cause a protein to unravel and lose its shape.
– This is called denaturation.
Figure 3.24
Nucleic Acids
• Nucleic acids are information storage molecules.
– They provide the directions for building proteins.
• There are two types of nucleic acids:

– DNA, deoxyribonucleic acid
– RNA, ribonucleic acid
• The genetic instructions in DNA

– Must be translated from “nucleic acid language”
to “protein language.”
Figure 3.25
• Each DNA nucleotide has one of the following

bases:
– Adenine (A)
– Guanine (G)
– Thymine (T)
– Cytosine (C)
Figure 3.26
8
• Nucleotide monomers are linked into long chains.
– These chains are called polynucleotides, or DNA
strands.
– A sugar-phosphate backbone joins them together.
Figure 3.27
Two strands of DNA join together to

form a double helix.
Figure 3.28b
Figure 3.28a
• RNA, ribonucleic acid, is different from DNA.

– Its sugar has an extra OH group.
– It has the base uracil (U) instead of thymine (T).
Figure 3.29
9
Figure 3.30
10

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Organic Molecules

CHAPTER 3 • A cell is mostly water.

Lectures by Chris C. Romero

– Carbon can share its electrons with other atoms to

• The simplest organic compounds are hydrocarbons.

– The simplest hydrocarbon is methane.

• The unique properties of an organic compound

Giant Molecules from Smaller Building Blocks

– Examples: DNA, carbohydrates

• Most macromolecules are polymers.

– Cells link monomers by dehydration reactions.

Organisms also have to break down

Figure 3.6a Figure 3.6b

– Fructose is found in fruit.

• Honey contains both glucose and fructose.

• The monosaccharides glucose and fructose are

In aqueous solutions, monosaccharides form rings. Disaccharides

• Disaccharides are joined through a dehydration

• The most common disaccharide is sucrose,

– Sucrose is extracted from sugar cane and the roots

• Animals store excess sugar in the form of a

– It is a major component of wood.

• Lipids are hydrophobic.

• Fats perform essential functions in the human • Unsaturated fatty acids

– Cushioning • Saturated fatty acids

• Most animal fats have a high proportion of

• Most plant oils tend to be low in saturated fatty

• Not all fats are unhealthy.

• Cholesterol is the “base steroid” from which your

Defensive Proteins Gene Regulatory

The Monomers: Amino Acids

• Each amino acid consists of

– A side group that is variable among all 20

Primary Protein Structure

• There are two types of nucleic acids:

– RNA, ribonucleic acid

• The genetic instructions in DNA

• Each DNA nucleotide has one of the following

– A sugar-phosphate backbone joins them together.

Two strands of DNA join together to

• RNA, ribonucleic acid, is different from DNA.

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