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Abstract
This article describes the development of single-cell models, their uses and accomplishments, the barriers to the
greater adoption, and a perspective on challenges to the biochemical engineering community where the single-cell
model approach may be used advantageously. In particular, it may become an important tool in relating genomic
information to cellular regulation and dynamics. 1999 Elsevier Science B.V. All rights reserved.
Keywords: Biochemical engineering; Cellular regulation; Genomic information; Single-cell models
0168-1656/99/$ - see front matter 1999 Elsevier Science B.V. All rights reserved.
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4. Some challenges/opportunities
The tools of genome analysis are making available to us the full genetic sequence of an increasingly large number of organisms. A philosophy of
genetic determinism has developed where if you
know the gene, all else follows. Yet, cells exist
with hierarchical regulatory systems that can often compensate for genetic deletions or miscues.
The interaction of this epigenetic, or regulatory
network, with the genome is not understood. The
interaction must be quantitative and involves interlocking, non-linear systems. Could SCM be
used in developing techniques to relate genetic
knowledge into physiology (e.g. functional genetics)? Would it be worth building a complete E.
coli model as a prototype of an approach to the
problem of relating the genome to cell physiology? These are challenging problems, but it is
difficult to imagine a more important problem for
modelers. A successful project responsive to these
challenges would be a fitting successor and tribute
to the work of Arnie Fredrickson.
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