Professional Documents
Culture Documents
After the break, you will carry out laboratory work, make the protocol of the practical work,
make the conclusions after each work. At the end of the lesson, you should hand your notebooks
with protocols and Ill put my signature there. That will be the end of our lesson. You are to have
another notebook for protocols (48-96 sheets of paper). You may re-write questions to the lesson
and laboratory works from the books with operating instructions (Ill bring them to each lesson).
You will also have lectures on biological chemistry (1 lecture in 2 weeks). You should have
one more notebook for writing lectures.
The student-on-duty will be appointed for each lesson. What are the responsibilities of this
student? During the break, the student-on-duty should go to the laboratory room and take the tray
with reagents and all the necessary equipment for the laboratory work. At the end of the lesson
each student should clean his own place (wash the tubes and other equipment) and the studenton-duty gathers the equipment back onto the tray and takes the tray back to the laboratory room.
The student-on-duty should also erase the board.
Annotation of the theme: Biological chemistry is the science that studies the nature of
substances which are in the composition of live organisms, their transformations, and also the
connection of these transformations with the activity of organs and tissues in normal conditions of
vital activity and in disease.
The main aim of biological chemistry is the formation of systematic knowledge of
mechanisms and chemical composition of the basic substances of the organism and molecular
bases of biological processes which make the basis for the vital activity of the organism in health
and in disease.
Historically, there are 3 periods of the development of biochemistry. Static biochemistry
studies composition, structure and properties of excreted biological combinations.
The main aim of biochemistry is to fully understand the nature of chemical processes on
the molecular level which are connected with the activity of cells.
Dynamic biochemistry investigates the transformation of substances in the organism and
the importance of this transformation for the processes of vital activity.
The functional period is connected with the investigation of the connection between the
chemical processes and physiological functions.
There is double-sided connection between biochemistry and medicine. Due to biochemical
researches, the scientists managed to answer many questions dealing with the development of
2
disease. The investigation of the reasons and progress of some diseases led to the formation of
new fields of biochemistry.
We will learn several methods of investigation while studying this subject.
You will learn the following themes this semester: chemistry of simple and complex
proteins, vitamins, enzymes, hormones, biological oxidation. Themes for the next semester:
digestion, the exchange of carbohydrates, lipids, proteins, biochemistry of blood and kidneys.
After each theme you will have a test.
The main aim of our lessons is not only to have some knowledge but to use the knowledge
of biochemistry in you practical work. Good-bye! See you in a week.
Final test-control is based on the questions of test- and programme-control, solving of
situational problems, reports on the topic. After that, post-test is carried out.
Instructions for the students (on self-reliant work):
1) Learn the aims of practical lessons and self-reliant work;
2) Try to use the information from the previous lessons;
3) Learn the basic notions and concepts of the theme of the lesson;
4) Analyze the work, make calculations and make conclusions.
Lesson 2
Topic: Chemical structure of proteins.
Questions or self-training:
1.Proteins are the structural elements of all living organisms.
2.What does hydrolysis of the proteins mean? What are the condiditions of its carrying out? Kinds
of hydrolysis?
3.Protein structure.
Primary, secondary, tertiary, quaternary structure of proteins. Dependence of The biological
properties of proteins on the peculiarities of protein molecule structure.
4.Changing the protein content of the body: hereditary and derivered proteinopathies.
5.Classification of proteins. Simple and compound proteins.
Annotation to the lesson:
Proteins are molecular nitrogen containing compounds, build from the residues of amino
acids, connected with each other by the peptide bonds.
Every of million existing species of living organisms (bacteria, animals, men) Contains its
own unique set of proteins. All of them distinctly differ from proteins of the other organisms. All the
proteins consist of 20 amino acids that can be combined with each other in different sequences.
That s why form a great number of proteins.
Functions of proteins:
1. Catalic (fermentation) function. All the ferments are proteins (pepsin, trepsin, amylase, and so
on).
2. Transport function.
Hemoglobin carries oxygen from the lungs to the tissues and carbon doxide rom the tissues to
the lungs.
3. Feeding and reserve function. Egg albumin is a source of feeding for the fetus.
4. Receptor function. Proteins of the biogical membranes.
4
5. Contraction function.
Actin and myosin are proteins of the muscular tissue. Structural function/
Keratin of the hair, nails. Elastin of the vessels/
6. Defense function. -Anti-bodies of blood serum are formed in response to entry of foreign
substances into the organism.
7. Regulatory function.
Insulin, glucagon regulates the blood glucose level.
8. They support the physiological meanings of pH in the internal medium of the organism.
Proteins have 4 organization levels. Primary structure is a sequence of amino acids
polypeptide chain.
Any peptide is unique in its primary structure. It determines the subsequent levels of protein
molecule organization. Substitution of amino acids in a polypeptide chain or their loss leads to the
change of structure, properties and functions of peptides. For example: during mutation of the
coding the polypeptide chain of hemoglobin, glutamine in the 6-th position is substituted to valine.
Hemoglobin loses its ability to bind and transport oxygen. Erythrocytes take the shape of a sickle,
the disease is called a sickle-like cellular anaemia.
Secondary structure is a way of twisting, packing of polypeptide chain into -helix or any other
configuration. It arises spontaneously.
There are two types of it:
a) -helix
b) -structure
a) 1 turn of -helix contains 3,6 amino acid residues. There is a lot of cysteine in an -helix, it
forms disulfide bonds between the helix turns.
-structure.
This type is found in proteins of hair, museles, and nails. And other fibrille proteins. It contains
much alamine, glycine/
Hydrogen bonds stabilize the secondary structure.
Tertiary structure is a three demensionae form polypeptide helix 4 types of the intermolecular
bonds stabilize tis structure.
5
Lesson 3
Topic: Chemistry of the nucleoproteins
Aim: To gain knowledge of the structure and biological role of nucleoproteins and to put it into
practice.
Questions for self-training:
1.What are nucleoproteins and what is there biological role?
2. Scheme of hydrolisis of nucleoproteins
3.Chemical structure of the nucleoproteins.
4. Chargaffs rules
5.Methods applied for the study of nucleoprotein structure.
Actuality of the topic:
To the most important scientific events of our century we should refer thst fact that genetic
information is coded by polymeric molecule of DNA, wich is formed only by 4 (four) types of
monomer units. It is the DNA that serves as a chemical base of heredity. Learning the structure
and functions of nucleic acids is necessary for understanding the main point of genetic processes
occurring in a cell. Its structure changing is the reason for hereditary diseases.
Nucleoproteins are compound proteins, that have their structure a protein part (that is simple
proteins - histones) and a prosthetic group, represented by nucleic acids DNA (deoxyribonucleic
asid) and RNA (ribonucleic asid).
Scheme of hydrolisis of nucleoproteins
Nucleoproteins
Protein
DNA, RNA
(histones)
polypeptides
aminoacids
polynucleotides
mononucleotides
nucleoside
purin bases
pentose
H3PO4
purins and pyrimidine bases
adenine
guanine
Pyrimidin nitrogen bases
cytosin
uracil
thimin
PENTOSE
CH2OH
O OH
H H
H
H
OH OH
ribose
CH2OH
O OH
H H
H
H
OH H
deoxyribose
OH
O P OH
OH
phosphoric acid
RNA
adenine
N- glycoside
bound
3,5 phosphoester
bound
cytosin
guanine
uracile
10
DNA
adenine
N- glycoside bound
3,5 phosphoester
bound
H
cytosin
H
guanine
uracile
11
Lesson 4
Topic: Protein Chemistry.
Questions for self-control:
1. Classification of conjugated proteins.
2. Chromoproteins; their chemical structure; myoglolin and Hb chemical structure. Abnormal
Hb. Glycosylated hemoglobin.
3. Glycoproteins. Chemical structure, biological role.
4. Phosphoproteins. Chemical structure, biological role.
Actuality of the topic:
A physician must know that almost all the proteins of human plasma, with the exception of
albumins as glycoproteins. Blood groups substances in some cases are glycoproteins; some
hormones (chorionic gonadotropin) have glycoprotein nature.
Recently, cancer is characterized more and more often as a result of abnormal gene regulation.
The main problem in a oncocological diseases is existing of metastasis, that is a phenomen,
which cancer cells leave the place of their origin and are carried by the blood flow to the distant
parts of the body, and grow unlimited with the catastrophic consequences for the patient. Many
oncologists consider metastasis to be conditioned by the change in structure of glycoconjugates
on the surface of cancer cells. Insufficient activity of various lysosome ferments destroying some
glycosaminglicanes is the basis of whole range of diseases (mucondysaecharidoses), as a result,
one or several of them accumulate in tissues and cause pathological symptoms. A physician must
also know that there are many forms of pathology connected, mainly, with hereditary disorders in
synthesis of apoprotein part of lipoproteins, as well as synthesis of key ferments or that of
lipoprotein receptors. They cause hypercholesterolemia and early atherosclerosis.
Training and educational aims
1. The total aim of the lesson: to work out the knowledge of structure and biological role of
conjugated proteins.
2. Particular aims: to form skills in carrying out analysis of conjugated proteins.
Annotation to the topic of the lesson
Conjugated proteins contain two components: protein and non-protein part that is called a
prosthetic group. In accordance with the character of this group one distinguishes:
12
13
Among them we distinguish hemoglobinopathies; for example, sickle-like cellular anemia, when
substitution occurs in synthesis of -chains in the 6 th state (position) of glutaminic acid to
valine. Erythrocytes gain the form of a sickle, affinity to O 2 decreases. Thalassemia is a disease in
which synthesis of chain or -chain is completely destroyed (thats why it is called
-thalassemia or thalassemia).
It is known that the erythrocytes of diabetic patients contain some per cent of minor
component Hb, the so-called Glycosylated Hb.
To the pathogenesis of diabetic complication we may refer that fact that the amount of Hb Al C
A1C in patient increases (up to12-15%) in comparison of 4-6%. Glycosylated Hb (A 1C) represent -
(negative) charged minor components of Hb and differ from HbA by the presence of glucose
bound to valine at the aminoend of -chains. Reaction is reformed non=fermentatively and
depends on glucose concentration. So at insufficiently compensated diabetes total conjugation
HbA1C is above 12%.
Myoglobin has tertiary structure and represents one chain Hb (153 amino acids)
In contradistinction to Hb, it binds O2 5 times faster. Here is hidden the great biological sense,
as for as myoglobin is in the depth of muscular tissue (where is low partial pressure O 2).
Myoglobin produces an oxygen reserve which is used up in case of need, filling in the temporary
lack of O2.
Phosphoproteins represent proteins in which phosphate residuum is connected to hydroxyl
serine group with ester bond. Caseins, i. e (that is) milk proteins are referred to them.
Phosphoproteins are wide spread. Phosphorylation of protein changes its function. With the
help of special ferments phosphorylation and dephosphorilation of proteins (for example,
glycogenhosphorylase, lipase) regulates their function in a cell. Phosphorylation of histones
decreases their ability to form bpnds with DNA and to regulate DNA metrical activity.
Glycoproteins are proteins (carbohydrate content varies from 1 to85%), containing
oligosaccharide chains, connected covalently to polypeptide base. It is a numerous group of
proteins with different functions:
1) structural molecules
- cell wall
- collagen, elastin
- fibrins
14
- bone matrix
2) lubricating and defensive agents
- mucins
- mucose suretions
3) transport molecules for:
- vitamins
- lipids
- minerals and microelemets
4) immunological molecules
- immunoglobulins
- antigens of histocompatibility
- complement
- interferon
5) hormones
- chronic gonadotropin
- thyrotropin
6) ferments
- proteases
- nucleases
- glycosydases
- hydrolases
- clotting factor
7) sites of cell contacts/ recognition
- cell-cell
- virus-cell
- bacterium-cell
- hormone receptors
15
Lesson 5.
Topic: Chemistry of protein. (Control lesson).
Questions for self-training the students
1. What are proteins? What is their role in the organism?
2. Amino acids are components of proteins; their chemical structure.
3. Modern conceptions of protein molecule structure: primary, secondary, tertiary and quaternary
structures (methods of study, chemical bonds keeping these structures.
4. Classification of proteins.
5. Biological role, characteristics of simple proteins: albumins, globulins.
6. Biological role and structure of conjugated proteins: chromoproteins, glucoproteins,
phosphoproteins.
7. Nucleoproteins: biological role, chemical structure of nucleic acids.
8. Hemoproteins. Biological role, structure of heme.
9. Glycosylated
proteins.
Characteristics.
Glycosylated hemoglobin.
16
Lesson 6.
Topic: Vitamins.
Aim: To form skills in use of the knowledge of vitamins, the action manifestation of their
deficiency the importance in practical activity of a doctor.
Questions for self training:
1. Concept of vitamin. Merits of scientists in development the study of vitamins.
2. Vitamins classification.
3. Presence of vitamins in nature; provitamins.
4. Hypovitaminosis, avitaminosis, hypervitaminosis, causes of origin.
5. Connection of vitamins and ferments. Mechanism of vitamin action.
6. Vitamins A, D, E, , Chemical structure, deficiency and biological role.
Vitamins are low molecular organic substances of varios chemical nature wich are
necessary for the nutrition of man and animals, but they do not perforue structural or energetic
functions.
The term vitamins was suggested in 1912 by Funk. (Vita- nuans life)
The principal point of vitamins classification, is based on their physical and chemical
properties:
1. fat- soluble vitamins: A, D, E, K;
2. water- soluble: B1, B2, B6, B12, H, PP, C;
The sources are:
- foods of vegetables and animals origin;
- microflora of intestine.
Some vitamins are produced by microflora of small intestine, for example, vitamins K, B 12,
chaline.
Provitamins are precursors of vitamins or non- active formsof vitamins.
It is known, the provitamins of vitamin A is , , carotene and under the action of intestinal
carotenase the are activized and turn into vitamin A.
Ergosterol and 7- dehudrocholesterol under ultra- violet light turns to vitamin D.
Hypovitaminosis is a pathological condition caused by insufficient consumption of vitamins,
certain clinical symptoms are not developed.
Symptoms: weakness, head-ache, rapid fatigue, decreassed resistance to infection.
17
Avitaminosis is a disease associated with absense of one or another vitamin in the body.
Avitaminoses result from hypovitaminoses and have a distinct clinical picture characteristic for an
individual avitaminosis.
Hypervitaminoses are diseases associated with exessive closes of vitamins taken for a
long period of time. They are often caused by fat- soluble that are able to accumulate in the
organism.
The causes of hypo- and avitaminoses can be divided into 2 groups.
1. Exogenous (alimentary form):
- insufficient content or lack of vitamins in food;
- disorder in a diet balance;
- one side nutrition;
- specific character of working activity;
- age and so on.
2. Endogenous (secondary avitaminoses):
- partial impairment in gastro-intestinal tract (low secretion of HCl);
- destruction of PP vitamin and other water- soluble vitamins;
- production disorder of internal Castles factor malignant anaemia;
- disorder in fat absorbtion; abstruction of bill ducts, impairment of pancreas function;
- changes of the genetic level-impairment of biosynthesis of protein wich is to bind vitamin
in cells (vitamin resistant condition).
Fat- soluble vitamins
Vitamin A- retino- axerophthol.
The main sources: milk, eggs, liver, red pulped fruit and vegetables.
Daily requirement-2,7 milligrams.
Retinol provides the growth, differentiation of tissues; retinol is important for normal function of
retina. Vitamin A takes part in proteins of glyciproteins and rhodopsin synthesis.
Avitaminosis of vitamin A causes night blindness (hemeralopia), infringement of sight
adaptation in the darkness. Delay of growth in young age, keratinization of the skin, caused by
delay in the exchange of epithelium, xerophthalmia, that is dryness of the mucous membrane of
an eye; the cornea becomes opaque and soft (keratomalacia), impairement of reproduction
function.
18
20
Lesson 7.
Topic: Water-soluble vitamins.
Questions for self-control:
1. To study chemical structure, daily requirement, spreading, deficiency, biological role of
vitamins Bi5 B2, B6; Bi2, PP, H, P, folic, pantothenic acids.
2. Vitamins, anti-vitamins remedies.
We can abserve vitamins and ferments in active coenzyme forms and take part in
carbonhydrate, protein, lipid and mineral metabolism.
For example:
Vitamins
Coenzyme form
B1
thiamindiphosphate
B2
oxidation- reduction
reactions
oxidation- reduction
(NAD)
reactions
PP
pyridoxalphosphate
in reactions of
phosphopyridoxalaminophosphate
transamination and
decarboxylation of amino acids
biotin
transport of CO2 in
carboxylation reactions
21
It is active form thiamine diphosphate (TDF) is coenzyme of decarboxylases, which take part
in carbonhydrate metabolism.
Vitamin B1 is a cofactor of the following ferment systems:
1. Pyruvate-dehydrogenaze complex.
2. ketoglutarat dehydrogenase complex of fermento(Cycle of tricarbon acids-cycle of
Crabs) where molecules ATF are formed.
3. Transketolases of key ferment of pentose cycle; productions of this cycle are
necessary for fatty acids, acetylcholine, nucleic acids.
Thiamine is necessary for acetylcholine synthesis and for normal functioning of the
nervous system.
The most sensitive to the back of this vitamins are the organs with the mereased
carbonhydrate metabolism, that is nervous system and heart muscle.
Classical avitaminosis B1 is beri-beri , it is a rapea disease in Europe; but it often
occurs in those countries where poor population has insufficient nutrition and, their diet
consists of polished rice.
Subclinical forms with hyporeflexia and edema are registered in Japan.
Vitamin B2 (riboflavin) is an active part of the prosthetic group of flavin ferments. They
takes part in cell breath and vision pigment formation.
Physiological action of riboflavin is included in growth and body mass stimulation, in the
increase of diuresis and removal of salts with urine.
By its participation in tissue breathing vitamin B2 promotes normal functioning of
epithemical tissue, crystalline lens, and the tissue most sensitive to oxygen deficiency, for
example, the brain.
Deficiency manifestates itself mainly in tissues of endodermal origin eyes, skin. We
can observe conjunctivitis, edema, corneal epacification, glossitis and papilla atrophy.
Daily requirement of vitamins B2 is 2-4 mg.
Vitamin B6 - pyroxine antidermatic. This group consists of 3 substances mutually
transformed into each other in liver: pyridoxine, pyridoxal and pyridoxamine. Vitamins B6
comprises many ferments which take part in regulation protein and other kinds of
22
metabolism. It performs transportation of amino acids from the blood flow to the tissues;
it activates processes of transamination, desamination and decarboxylation of amino
acids. It stimulates synthesis of protein that transports iron in the blood, purine and
pyrimidines nucleotides.
Vitamin B12 - cyanocobalamine - is necessary for desoxyribose formation, as well as
DNA and nucleoproteins. It is necessary for normal growth, normal function of nervous
system, and normal blood formation.
At B12 deficiency erythroblasts cannot divide into megaloblasts, which produce large
immature forms of erythroblasts - megalocytes - specific for B 12 deficial anaemia.
Vitamin B12 is absorbed in the intestine only when it is connected with a specific
mucoprotein(Castles factor).There also the spinal cord - demyelination.
Daily requirement is 10-12 mkg.
Folic acid takes part in the transmission of methyle groups and is necessary for amino
acids exchange and synthesis of DNA. Tissues with rapid cell proliferation re especially
sensitive to the deficiency of folic acid (erythrocytes).
Daily requirement of folic acid is 1-2 mg.
Vitamin PP (nicotinic acid) is synthesized from tryptophane by intestine bacteria. Nicotinic
acid and its amid play an important role in organism, as nicotinamid is a coenzyme of
pyridine ferments (NAD and NADF), which take place in the oxidation - reduction
reactions.
Deficiency of vitamin PP gives rise to pellagra. The most characteristic features
of this disease are: a symptom of 3 Ds (dermatitis, diarrhea and dementia). Dermatitis
involve those exposed to the sun surface (back o the hand, neck, face). The skin
becomes red, then brown and rough.
Diarrhoea is accompanied with anorexia, nausea, vomiting, pain in the
abdomen. Specifies symptoms for pellagra are stomatites, gingivitis, tongue involvement.
Dementia - mental deterioration accompanied with head - ache, dizziness,
nervousness, depression.
23
Lesson 8.
Topic: Vitamins, (control lesson).
24
Lesson 9
Topic: Enzymes.
25
In the organism any chemical reaction passes at definite energetic level, at definite
activation energy. Enzymes reduce activation energy by means of increasing the number of
activated molecules, which become reactive at lower energetic level.
Fermentation reaction is a multi-staged process. In the first stage approach and orientation
occur; and also induced complementary correspondance (ratio) between enzyme and substrate
becomes settled; as a result enzyme-substrate complex (ES) is formed.
In the second stage strain and deformation of substrate appears, it results in the shift of
electron density, change of polarization degree; bounds in substrate molecule are deformed and
are decomposed easily.
During the process of enzyme - substrate complex formation a transient state is achieved,
which is characterized by low activation energy, and as a result a new product is formed; and
after its dissociation the enzyme returns to its initial state.
Enzyme activity is effected by temperature, pH media, ion power of solutions.
As enzymes are proteins by chemical nature, temperature rise above 45-50C (Celsium
degrees) leads to heat denaturation; and enzymes become inactive (with the exception of
muscular myokinase, papain).
Low temperatures does not destroy enzymes, but only suspend their action. The optimum
temperature at which an enzyme shows maximum activity is 37 40 C.
Enzymes activity is effected by medium reaction. For every enzyme there is a pH where it
acts at its best and this is its optimal pH. The optimum pH of enzyme action ranges from 6,0 to
8,0 of its physiological meanings. Exceptions are: pepsin, pH optimum of which is 2,0; arginase pH optimum is 10,0.
Enzymes exhibit specificity. There are distinguished some types of specificity:
1. Absolute specificity - enzyme contacts with only one substrate. For example, urease
accelerates urea hydrolysis, but it does not breaks up thiourea.
2. Stereo-specificity enzyme contacts with a definite optical and geometrical isomer.
3. Absolute group specificity - enzymes are specific with regard to their bound character, and
also to those conjunctions that form this bound. For example, a -amilase breaks up a-glycoside
bound in a maltose molecule, consisting of 2 glucose molecules;
but it does not break up saccharose molecule, consisting of a glucose molecule and a fructose
molecule.
28
4. Relative group specificity. In this case enzymes are specific only with the regard to the
bound, but they are indifferent to those conjunctions, that form this bound. For example,
proteases accelerate peptide bounds hydrolysis in different proteins; Lipases accelerate the
break up of ester bounds in fats.
Lesson 10
Topic: Enzymes
Questions for self-control:
29
1. Structure of simple and complex enzymes (on the example of hydrolases, dehydrogenases).
2. Catalytic (active) and regulatory (allosteric) enzyme centers, (site)
3. Activators and inhibitors of enzymes, mechanism of their effect and importance.
4. Allosteric regulation of enzyme activity (regulation according to reaction of back-coupling
type).
5. Isoenzymes, immobilized enzymes , their significance in medicine.
Annotation to the lesson:
According to the composition all the enzymes are divided into simple and complex.
Simple enzymes consist of amino acids. Enzymes of gastro-intestinal tract are referred to
them.-that is a-amylase, pepsin, trypsin, lipase, etc. All these enzymes refer to the third class ~
hydrolases.
Complex enzymes consist of protein part (apoenzyme) and nonprotein part (cofactor). ^
Catalytic active complex "enzyme-cofactor is called holoenzyme. Both metallic ions and organic
compounds, many of which are vitamin derivatives, can be cofactors.
For example, oxidoreductases are used as cofactors Fe 2+, Cu2+, Mn2+, kinase Mg2+.
Coenzymes are organic substances unstable associated with a protein part. For example,
-dependants of dehydrogenase consist of protein and coenzymes of , ,
derivatives of vitamin PP.
Coenzymes being, bond firmly(often covalently) with apoenzyme, compose a prosthetic group.
For example, flavin dehydrogenases consist of protein and prosthetic groups , ,
derivatives of vitamin B2. Apoenzyme determines trend or specificity of enzyme action.
Active site is spatial organization of large complexes made of amino acid residues: serine OH group; cysteine - SH group; lysine NH2 group; histidine - imidazole ring; glutaminic, aspartic
acids - COOH group.
According to their primary structure these amino acid residues are arranged at different
distance from each other. During secondary and tertiary structure formation amino acid residues
are drawing together and form an active site.
The active site includes substrat-binding part (portion) which is responsible for specific
complementary binding of substrate; and catalytic part of direct chemical interaction.
30
Besides the active site, regulatory (allosteric) enzymes have allosteric site. Hormones or
reaction products can join allosteric site. It causes alteration of active site structure. These
substances are called allosteric effectors (modificators). Effectors can be positive (they increase
enzyme action) and negative (they block enzyme action).
Chemical reaction rate is influenced by different substances. According to their influence
character the substances are subdivided into activators (increasing enzyme activity) and
inhibitors (paralyzants) inhibiting enzyme activity.
Enzyme activation may be caused by:
1. Presence of cofactors-metallic ions Fe 2+, Mg2+, Mn2+, Cu2+, Zn2+, , lipoic acid.
2. Tneir partial proteolysis.
Gastro-intestinal tract enzymes are produced as inactive forms-zymogens. Under various
factors chipping off of peptide occurs with the formation of active site; and zymogen transforms
into active enzyme form.
Pepsinogen
HCL
Trypsinogen
enterokinase
pepsin + peptide
trypsin + peptide
According to Ac type of action the inhibitors are divided into reversible and irreversible. Stability
of inhibitor and enzyme conjunction is die base of such division.
Reversible inhibitors are complexes which interact noncovalentiy with enzyme and can split off
the enzyme.
irreversible inhibitors are complexes with covalent, stable bonds with enzyme.
Irreversible inhibition may be specific and non-specific.
By specific inhibition, inhibitors reduce action of definite enzymes, binding some functional
groups of the active site. For example, thiol toxins inhibit enzymes; active site of them contains
SH-groups; carbon monoxide (CO) inhibits enzymes with Fe 2+ in their active site.
Non-specific inhibitors reduce effect of all enzymes. AH denaturating factors (high temperature,
organic and mineral acids, heavy metal salts, etc.) are referred to them.
31
E1
E2
En
Every tissue has its definite isoenzyme spectrum of LDH: in a cardiac muscle there is
LDH 1,2 ; in a liver ~ LDH 4,5
Why is enzyme synthetized in several molecular forms?
In tissues with mainly aerobic metabolism (cardiac muscle), there prevail forms of
LDH 1,2 which provide tissues with a large amount of energy- 38 ATP molecules. In tissues with
anaerobic metabolism (liver, skeletal muscles) prevail LDH 4,5; and it results in formation of lactic
acid and 2ATP molecules.
To determine the isoenzyme activity level is of great importance in diagnostics.
For example, the increase of LDH 1,2 activity is observed in myocardial infarction; of
LDH 4, 5 ~ in hepatic diseases (hepatitis, cirrhosis).
Lesson 11
Topic: Enzymes.
Questions for self-control.
33
3.
4.
enzymes activity.
5.
6.
dehydrogenases).
7.
8.
9.
coupling type).
10. Isoenzymes, immobilized enzymes, their significance in medicine.
Lesson 12
Topic: Hormones.
Questions for self control.
1. Notion of hormones, their biological role. Classification.
34
2. The main mechanisms of metabolic regulation/ the role o central nervous system
(CNC) in metabolic processes regulation, releasing factors, liberins, statins, hormones of
hypophysis.
3. Cells, target organs, cell receptors of hormones. 3, 5 cAMP prostaglandins.
Mechanism of signal transmission to the cell (with the participation of protein-peptide
hormones, catecholamines, steroids and thyronines).
4. Mechanism of hormone action, mechanisms of immediate and chronic regulation.
5. Hormones produced by pancreas: insulin, glucagons; chemical structure,
mechanism of action; their influence to carbohydrates, fats and amino acids metabolism.
Transformation of metabolic processes in diabetes mellitus.
6. Hormones, and their influence on metabolic processes.
Actuality of the topic.
The physician must know what hormones are, what is their role in metabolic regulation; he
must know synthesis regulation and that of hormone secretion according to the back-coupling
mechanism, as well as target cells and cell receptors of hormones. He must understand the
mechanism of hormones signals to the cell, hormone status transformation and metabolism in
diabetes mellitus, pathogenesis of the main diabetic symptoms, as well as glucagons and
adrenalin influence the metabolic processes.
Annotation on the topic:
Hormones are biologically active substances synthetizing, as a rule, in the endocrine glands in
tracing quantities; when regulating metabolic processes they ensure stability of the body internal
medium.
Classification of hormones.
According to the site of synthesis all hormones are divided into actual and tissue ones.
Actual hormones are synthetized in the endocrine glands and are divided into three classes
according to their chemical structures:
1.
2.
1.
2.
3.
Prostaglandins.
4.
Kinins-bradykinin.
The leading role in regulation of all body function plays central nervous system (CNS).
Signals of internal and external body environment enter CNS. In the hypothalamus they
are transformed into releasing factors (RF). Releasing factors are peptides which contain from 3
to 14 amino acid residues. At present, there are liberated 7 liberins-releasing factors, which
stimulate hypophysis hormones synthesis; and 3 statins depressing hypophysis hormones
synthesis. For example, thyroliberin is a tripeptide which consists of glutaminic acid, histidine, and
praline. Thyroliberin stimulates production of thyrotropic hormone and prolactine in hypophysis.
Somato-statin is a peptide consisting of 14 amino acid residues; it inhibits somatotropic hormone
production in hypophysis.
Change of metabolites concentration in target cells according to the mechanism of
negative back-coupling inhibits hormone synthesis, effecting either endocrine glands or
hypothalamus; tropic hormones synthesis and secretion is inhibited by peripheral glands
hormones.
Produced hormones pass from the endocrine glands to the blood stream and then
accumulate in the certain target organs. Cells of the target organs contain cell receptorsglycoproteins in the quarternary structure. Cell receptors can place in a cell membrane,
cytoplasm and nucleus. Receptors have affinity to a hormone and from a complex with it without
energy consumption (spontaneously).
The number of receptors may very due to functional state of the organism; and in
pathological condition it may be a reason for some endocrine diseases.
Mechanisms of hormone signals transmission to cells.
1. Interaction of hormones of protein-peptide origin and catecholamines with a cell
(membrane mechanism).
36
37
Hormones pass inside the cell and join the cytoplasmatic receptor, thus forming a complex.
This complex penetrates a nucleus and interacts with a nucleus receptor in chromatine; it
influences the transcription of u-RNA and, therefore, protein-enzyme synthesis.
Mechanism of hormone action:
1.
2.
of immediate regulation)
3.
Glucagon hormone, consisting of 29 amino acid residues, is secreted by pancreatic cells. It is made of a precursor-proglucagone, which in a process o partial proteolysis turns into
glucagon. Glucagon is produced in blood decreases (hypoglycaemia). Glucacon increases the
level of glucose in blood, owing to glycogene break up; it activates enzyme phosphorylase
according to immediate regulation mechanism (adenylat cyclase system).Besides, glucagon
stimulates glucose formation out of amino acids by mean of induction of glucogenesis enzymes
synthesis.
By -cells of pancreas insulin is produced from proinsulin precursor. Proinsulin, in its turn,
is produced of preproinsulin.
Insulin molecule consists of 2 polypeptide chains, connected with each other in two points
by disulfide bridges. A chain consists of 21 amino acid residues, B chain-of 30 amino acid
residues.
Insulin is produce when the level of glucose in blood is increasing (hyperglycaemia); at the
same time it decreases glucose content. Insulin increases the penetrability of cell membranes in
respect of glucose. Insulin is connected with SH-groups o cell membranes by disulfide bridges;
and as a result globular membrane is formed out of laminar one; and glucose passes inside the
cell.
Insulin activates enzyme hexokinase under allosteric interaction type; it catalyzes
transformation of glucose into glucose -6- phosphate.
Hexokinase
Glucose
glucose-6-phosphate
in the liver
glycogen
in tissue source of energy
38
39
Lesson 13.
Topic: Metabolic regulation.
Questions for self-control.
1. Hormones of hypophysis, their chemical structure, effect to metabolism.
2. Adrenal cortex. Glycocorticoids, biosynthesis, their representatives, chemical structure, their
effect on the carbonhydrate metabolism. Mineral corticoids, structure, their effect on mineral salts
and water metabolism.
3.Hormones of thyroid gland, their structure. Clinical manifestation of hypothyroidism and
hyperthyroidism.
4. Endemis goiter. Reasons of pathology and preventive measures.
5. Hormones of parathyroid glad, their chemical structure, effect on metabolism.
6. Sex hormones, their chemical structure, effect on metabolism.
7. Use of hormones as medicine.
Annotation on the topic
1. There are 3 lobes in a hypophysis: the anterior lobe-adenohypophysis, the intermediate partglandular, and the posterior lobe or neurohypophysis.
The following hormones are produced in the anterior lobe of hypophysis: the somatotrophic
hormone (STH), adreno-corticotropic hormone (ACTH), thytroprophic hormone (TTH), the folliclestimulating hormone (FSH), the luteinizing hormone (ZH), prolactin.
Somatotropic hormone consists of 191 amino acid residues, it contains two disulfide bonds. STH
regulates the growth and development of the whole organism. Hypo function of STH-is
hepophysial dwarfism with proportional under-development of the whole body, including the
skeleton. Hyperfunction of STH in childhood results in gigantism with a proportional enlargement
of the skeleton. Hyper-unction of STH in the adults results in acromegaly-unproportionally
intensive enlargement of some body parts (hands, feet, lower, jaw, nose, tongue). Under the
effect of somatotropic hormone insulin and glucagone are produced in a pancreas. A small
concentration of TSH is observed in new born and infants under one year; it may be explained
by their intensive growth during this period of life.
40
The catabolism of adrenal cortex hormones takes place in the liver first. Here the reactions of
hydroxylation, oxidation and reduction of hormones take place. Corticoid catabolism products
(except corticosteron and aldosteron) are excreted with urine in a form of 17-ketosteroids. These
metabolic products are excreted mainly in a from of conjugates with glucuronic and sulphuric
acids.
In males 2\3 (two thirds) of ketosteroids are formed from corticosteroids and 1\3-from
testosterones (only 12-17 mg a day).
Hypofunction of adrenal cortex hormones (hypocorticoidism), known as. Addisons disease or
bronzed disease, develops as a result of tuberculosis or autoimmune infringement. The clinical
manifestation are: hypoglycaemia, the excretion from the organism of great quantities of Na + and
Cl+ ions and water (diarrhea), dehydration, hypotention (low arterial pressure), holding of K + ions
in the organism. An intensive pigmentation of the skin is also observed. It is due to that fact that
according to feed back mechanism hypophysis produces much ACTH, which stimulates
production of skin pigment melanin.
Hyperfunction of adrenal cortex hormones (hypercorticoidism), known as Itsenko-Cushings
disease or steroid diabetes, is accompanied by hyperglycaemia, glucosuria; Great quantities of
Na+ and Cl+ions and water are held in the organism. It leads to edemas (moon-like face), and to
increasing of the arterial pressure.
Thyroid gland
The thyroid gland consist of glandular follicles (cavities) filled with a semi-fluid secretioncolloid. In these follicles iodinethyronines, composing thyroglobulin, are synthetized from
tyrosine amino acid and free iodine which enter the organism with food and water.
Under the effect of thyroperoxidase the oxidized iodine reacts with tyrosine residues; as a
result monoiodinethyronines (MIT) and diiodinethyronines (DIT) are formed. Two molecules of
DIT are condensing and produce thyroxin (T 4) , and MIT and DIT produce triiodinethyrinine (T3).
Iodinethyroglobin is transported to a cell by means of endocytosis and is hydrolysed by
lysosome enzymes with liberation of T3 (triiodinethyrinine) and T4 (tetraiodinethyrinine).
Synthesis of iodinethyronines is stimulated by TTH (thyrotropic hormone) of hypophysis.
Iodinethyronines regulate:
- growth, development and differentiation of tissue
42
- energy exchange
- carbonhydrate
- lipid metabolism
- hydro-electrolytic exchange and so on.
Hypofunction of thyroid gland in the early childhood leads to the development of a disease known
as cretinism (retarded growth, ugly disproportional body build, delayed mental development).
Hypofunction of the thyroid gland in the adults leads to the development of myxoedeme (edema
of the mucosa). Clinical manifestations are as follows: edemas (hydro-electrolytic exchange in
infringed), pathological obesity, falling out of hair and teeth. Basal metabolism is low.
Hyperfunction of the thyroid gland leads to the disease known as diffuse toxic goiter
(Basedows disease); it is accompanied by exophthalmos (protrusion of the eyeballs),
tachycardia, goiter (the enlarged thyroid gland); hightened basal metabolism. Body temperature
is high; the patients are extremely nervous; they have clammy hands; they are hungry.
It is due to that fact that thyroxin is a disconnected of oxidation and phosphorylation.
Endemic goiter is a disease, connected with the lack of iodine on food and water. It leads to
the compensatory enlargement of the mass of the thyroid gland due to the accretion of the
connective tissue.
One of the hormones of thyroid gland is calcitonin, consisting of 32 amino acid residues. It
regulated the exchange of phosphorus and calcium. Calcium decreases the content of calcium in
blood due to inhibition of its leaving the bone tissue and stimulated the excretion of calcium with
urine.
Parathyroid gland
Parathyroid gland, consisting of 84 amino acid residues is the antagonist of cacitonin as it
increases the level of calcium in blood due to the demineralization of bone tissue (washing-out of
calcium salts).
Besides, it increases the reabsorption of calcium in renal tubules and decreases the reabsorption
of phosphates. It leads to the reduction of phosphates in blood (hypophatemia), it promotes
enzyme activation phosphatase, which also washes out phosphoric and calcium salts from the
bone tissue. The synergist of parathyroid hormone is calcitroil, an active form of vitamin D 3, that
influences the synthesis of calcium binding protein in the intestine.
43
44
Lesson 14.
Topic: Hormones (control lesson).
Questions for self - control.
1. Notion of hormones, the sites of hormones formation.
2. Classification of hormones.
3. The role of central nervous system in metabolic regulation. Mechanism of direct and "feed
back" connection.
4. Releasing- factors (liberins, statins), tropic hormones of hypophysis.
5. Cells, target- organs, cell receptors, hormones.
6. Interaction of hormones of protein and peptide nature, catecholamines, steroids and thyronines
with a cell.
7. Cyclic 3, 5'- AMP as mediator between hormones and intra-cellular mechanisms of hormone
activity realization.
8. Prostaglandins, their regulatory role.
9. Hormones of hypophysis, their influence on metabolism.
10. Hormones of the pancreas: insulin, glucagon; their chemical structure, mechanism of action;
influence of substances.
11. Hormones of medulla of adrenal gland: adrenalin, noradrenalin; chemical structure, their
influence on metabolic processes.
12. Adrenal cortex. Glycocorticoids; biosynthesis; representatives, chemical structure, influence
on metabolism. Mineral corticoids, structure, influence on mineral salts and water exchange.
13. Hormones of thyroid gland, structure. Influence on metabolism. Clinical manifestation
ofhypothyroidism and hyperthyroidism (cretinism, myxoedema, Basedow's disease).
14. Endemic goiter. Causes of pathology and ways of its prevention.
15. Hormones of parathyroid gland, their chemical structure, their influence on metabolism.
16. Sex hormones, their chemical structure, their influence on metabolism.
17. Use hormones as medicines.
18. By color reaction, prove that insulin is protein.
19. By means of color reaction, prove that there are amino acids, containing sulphur, in insulin.
45
Lesson 15.
Topic: Biological oxidation.
Question for self-control.
1. Concept of metabolism. Anabolic and catabolic processes and their interrelationship.
2. Exergonic and exergonic processes. Macroergonic compounds. ATP is a universal
accumulator and a universal source of energy in the organism.
3. Modern conceptions of biological oxidation and its role in the organism.
4. Place of oxidation. Substrates of oxidation.
5. Respiratory chain. Components of respiratory chain (complexes I, III, IV). Carriers of electrons
and protons along the chain.
6. Oxidazing phosphorulation. P/o coefficient. Free oxidation. Respiratory control.
Metabolism is a complex of anabolic and catabolic processes, taking place in the
human body.
Anabolic processes are the processes of synthesis of compound substances from simple
ones with energy expenditure.
Catabolic processes are the processes connected with break-down of compound
substances into more simple with energy emission.
Proteins, fats and carbohydrates are sources of energy in the body. This energy is concluded
in their chemical bonds produced as a result of transformation of sun energy during the
photosynthesis.
Products of break-down of proteins, fats and carbohydrates lead to energy production in a
form of ATP under oxidation. These processes, accompanied by energy emission, are called
exergonic processes.
For example: aerobic and anaerobic oxidation of glucose, oxidation of higher fatty acid.
The processes accompanied by energy absorption are called endergonic processes. ATP
takes the central place between this two processes. ATP is a macroergonic compound. The body
produces 62 kg of ATP daily.
46
ATP is a universal accumulator and source of energy, as only ATP energy is used for various
kinds of human body activity. For example, transmission of a nerve impulse, syntheses of various
substances, muscle construction, excretory function of kidneys, and so on.
Energy charge serves the index of energetic state of cells. It can be calculated using the
following formula:
[ATP] + [1/2 ADP]
= 0,9
47
can
be
lot
of
carriers
in
the
respiratory
chain.
(80
The main components of the respiratory chain are located in a strict order of oxidizing
reduction potential acceleration. Hydrogen nuclei or electrons move along the chain from the
more electronegative components to more electro- positive oxygen.
a hydrogen electrode is equal to- 0,42 and oxidizing- reduction potential of O2/H2O is +0,82.
Each carrier in a respiratory chain is in oxidated state at first; while receiving electrons it
transports
into
reduced
and
passes
electrons
to
the
next
carrier.
At the last stage the carrier gives back O2 electrons and reduces them to H2O.
The role of enzymes- carriers in the respiratory chain is reduced to activation energy
decreasing; free energy decreases and energy is released not in form of explosion but gradually,
in portions.
48
5 types of cytochromes take part in electron transport chain: a1 a3 b c c1. ytochromes are
transported only by electrons.
Ferrum in a heme can change its valence.
(oxide form) ferrous oxide (protoxide form)
ytochromes are arranged in a certain order, redox potential order.
Complex III - Q H2 dehydrogenase.
It consist of 2 types of cytochromes b (b1 and b2) and cytochrome C1. This complex
transports electrons from hydroquinone to cytochrome C. Inside the complex electrons are
passed from cytochromes b to ferrum- sulphuric centers and then to cytochrome C1. And the
last cytochrome passed electrons to cytochrome C.
Cyt. C is a peripheral water- soluble membranous protein; it has one polypeptide chain
(consisting of 100 amino acid residues) and a heme covalently found with polypeptides.
Complex IV - cytochromeoxidase.
It consists of 2 cytochromes of a a3 type; each of them has a center (site) of oxygen binding.
Besides Fe, it contains Cu ions, bound with a protein part.
This complex reacts directly with molecular oxygen, it transfers electrons to it; and protons are
transferred from ubiquinone. It results in production of water and ATP energy.
Energy, released at electron transfer along the respiratory chain, is used for ATP synthesis. It
has 3 parts were electrons transfer is accompanied by relatively great decrease of free energy.
The amount of free energy that is necessary for ATP synthesis from ADP and phosphate, is
sufficient in these parts.
Complexes I, III and IV are the points of phosphorylation and respiration conjunction.
ATP synthesis from ADP and non- organic phosphate due to electron transfer along the
respiratory chain is called oxidizing phosphorylation.
Correlation of the amount of phosphoric acid used for ADP phosphorylation to the nucleus of
absorbed oxygen is called a oxidizing phosphorylation coefficient and is marked as P/O.
For the majority of substrates: NAD.H + H+ pyruvate, malate, isocitrate this coefficient equals
3.
On condition of FAD- dependent dehydrogenase action, complex II is omitted and thus, P/O=2.
We observe it in those cases when succinate, glycerol- 3 phosphate, and others are oxidation
substrates. Oxidation of adrenaline and ascorbic acid if performed under P/O equal 1.
50
By electron transfer along the chain, 40-45% of energy is used for ATP synthesis, 25% - for the
work on substance transfer through a membrane; the rest part of it is dispersed as heat and is
used for keeping up body temperature.
Additional heat production can occur at respiration and phosphorylation separation. It may be
useful for keeping up body temperature in newborns; they have special tissue- brown fat, which
produces heat by means of respiration and phosphorylation disconnecting. There is a special
disconnecting protein- thermogenine.
Disconnectors are lipophilic substances able to pass through the lipid layer of membrane:
- bilirubin
- thyroxine
- 2,4- dinitrophenol
51
Lesson 16.
Topic: Biological oxidation.
Question for self-control.
1. Crebss cycle (chemical reactions).
2. Energy balance of Crebss cycle.
3. The significance of Crebss cycle.
4. Hypoenergetic state
5. Free- radical oxidation, production of hydrogen peroxide, anion superoxide and their
further fate.
Crebss cycle was discovered by Crebs in 1937. (He was awarded the Nobel Prize in 1953).
That is why this cycle is called the Krebss cycle or citric acid cycle. Krebss cycle is a metabolic
process where proteins, fats and carbohydrates are consumed. All the reactions take their course
in a matrix of mitochondria.
52
53
54
The significance of Crebss cycle Integrational- it joints the pathways of protein, fat,
carbohydrate catabolism.
1. Plastic- tricarbonic acid cycle substrates are used for synthesis of other substances, for
example:
a). acetyl CoA is used for synthesis of cholesterol and its derivatives (bile acids,
provitamin D3, steroid hormone), higher fatty acids, acetylcholine.
b). CO2 is for synthesis of glucose, higher fatty acids, purine and pirimidine bases.
c). succinyl- CoA- for heme synthesis.
d). ketoglutarate- for glutaminic acid, proline, arginine.
e). oxaloacetate- for glucose synthesis, asparagine.
f). purovine acid- lysine synthesis, valine.
g). fumaric acid- for urea synthesis.
3. Energetic function. As a result of substrate phosphorilyzation one molecule of ATP is
produced.
4. Hydrogenerating- it supplies 4 pairs of hydrogen for the respiratory chain.
Infringement of Crebss cycle. (hypoenergetic state).
2. Krebss cycle substrates deficiency, for example:
In diabetes mellitus oxaloacetate concentration is reduced, at starvation.
3. Enzyme activity is changed when their synthesis is infringed and results in avitaminosis of
B, PP, B2, B3 and others.
4. Hypoxia, deficiency of O2 in the breathed in air: diseases of cardiovascular system,
respiratory system, anaemia.
Oxygen toxicity and hydrogen peroxide formation
(active form of oxygen).
Oxygen may be toxic.
Oxygen toxicity is conditioned by intermediate products under incomplete one- electron of
oxygen.
NO. nitrogen oxide
O2.- - superoxide anion
HO. hydroxyl radical
55
Hb + O2 HbO2 oxihemoglobin.
However, oxihemoglobin turns into methemoglobin (contains Fe 3+, but not Fe2+) and
superoxide O2-. .
2. Grippe virus reacts with neutrophils of pulmonary tissue and prodused O 2.- , H2O2 which
maintains inflannation destructive changes.
3. Neutrophils, excessively accumulated in the inflamed joints, also produse O 2, promoting
the development of arthrites.
All these toxic radicals damage cells (they destroy proteins, lipids, membranes; they help
H2O, ions to penetrate a cell).
There exist some protective mechanisms:
1)
2)
56
Lesson 17.
Topic: Biological oxidation (control lesson).
1. Concept of metabolism. Anabolic and catabolic processes and their interrelationship.
2. Exergonic and exergonic processes. Macroergonic compounds. ATP is a universal
accumulator and a universal source of energy in the organism.
3. Modern conceptions of biological oxidation and its role in the organism. Stages of biological
oxidation.
4. Place of oxidation. Substrates of oxidation.
5. Respiratory chain. Components of respiratory chain (complexes I, III, IV). Carriers of electrons
and protons along the chain.
6. Oxidazing phosphorulation. P/o coefficient. Free oxidation.
7. Crebss cycle (chemical reactions).
8. Energy balance of Crebss cycle.
9. The significance of Crebss cycle.
10. Hypoenergetic state.
11. Free- radical oxidation, production of hydrogen peroxide, anion superoxide and their further
fate.
57