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Methods
Description of data
We used data from the taxonomic database of the
Inst. de Ecologa, Mexico (XAL; Guzman et al. 2003).
Eight regions in the state of Veracruz, were chosen
for this study: 1) Veracruz /Papaloapan, 2) Los Tuxtlas /
Catemaco, 3) Uxpanapa /Coatzacoalcos 4) Xalapa /
Rafael Lucio, 5) Zoncuantla, 6) Coatepec /Xico, and
7, 8) two distinctive regions within the Cofre de Perote
area (Fig. 1). Each region was separated by at least 15
km (mean /60 km). These regions were also part of an
altitudinal gradient. The regions were grouped into three
main vegetation types: tropical forest from sea level to
900 m (regions 1 /3 above), subtropical cloud forest from
900 /1700 m (regions 4 /6), and two alpine forests
composed primarily of either a) Pinus and Quercus trees
(1800 /2800 m; region 7), or b) Abies trees (2800 /3000
m; region 8). In each type of forest, secondary vegetation
(meadows or shrubs) was also considered where the
original vegetation is under high human influence
(regions 1 /6). Within each region, an average of 25
localities were sampled, except region 5 where five
localities were intensively studied relative to the others.
All eight regions presented similar temperature and
rainfall patterns although the magnitude varied considerably among regions (Fig. 2).
The fungi in the database were collected from 1970 to
2000. Each sample in the database represents an
individual macromycete with one or more fruit bodies,
and the data for such individual includes species name,
date and site of collection, collector, habitat and vegetation type. Macromycete sampling occurred year round,
however, emphasis has been placed during the rainy
season (June /September) because that is when the
majority of species produce fruit bodies. Therefore,
during the dry season the regions have been sampled
proportional to the wet season. The number of records
for the eight regions comprises 84% of the total number
of records in the XAL database. A total of 5627 records
comprised of 693 macromycete species were analyzed in
this study. These species were mainly comprised of
Ascomycetes (e.g. Pyrenomycetes and Discomycetes)
and Basidiomycetes (e.g. Agaricales, Aphyllophorales,
Gasteromycetes s.l., and Tremellales; where Agaricales
and Aphyllophorales were the most abundant).
Data analysis
The first analysis consisted of comparing fungal distribution across the eight regions (question 1). Previous
ECOGRAPHY 29:1 (2006)
Rainfall (mm)
500
450
400
350
300
250
200
150
100
50
0
10
11
12
10
11
12
Month
Te mperature (C)
30
25
20
15
10
5
0
1
Month
60
Results
Species abundance and distribution
Most of the species analyzed in this study are sparsely
distributed, occurring at only a few sites within a region
(Fig. 3). In fact 63% of the species occurred at only
one site within each region. In all eight regions, there
was a positive correlation between a species abundance
and the number of sites it was present (Kendalls Tau,
mean correlation/0.66, SD /0.22, all p-values B/0.05).
Wright (1991) noted that such a correlation could be due
to sampling artifacts. In order to test for sampling
effects, we regressed the natural logarithm of species
absence frequency (ln(1/p), where p is the percentage of
sites occupied) against the mean number of species
within a region. Under the Poisson null hypothesis,
this relationship should have a slope of /1 and intercept
of 0. For our dataset, the slopes across all regions ranged
from /0.05 to /0.2, and the intercepts ranged from
0.99 to 2.0 (all intercepts statistically different from
zero). Therefore, sampling artifacts do not seem to be
responsible for the positive correlations we observed.
Pairwise correlations were performed among all regions
to assess similarities in the frequency-by-site distributions. The distributions were positively correlated across
all regions (Kendalls Tau, mean correlation /0.84,
SD /0.12, all p-values B/0.05). In other words, all
Proportion of species
tion within a region. We performed a seasonal comparison of community structure using Correspondence
Analysis (CA) with a scaling on intersample distances
(bi-plot scaling) and a down-weight of rare species. The
matrix consisted of 441 species grouped into bimesters
for each region. Because region 4 had more species than
the other regions, we rarefied the species to the mean
abundance levels of these seven remaining regions. We
grouped monthly observations into bimesters in order to
minimize the number of zeros in each sampling unit, and
excluded those species that only occurred once. The first
three axes scores from the CA were then compared using
a MANOVA with either bimonthly periods or vegetation
as treatments. In addition, we performed a second CA
on region 4, Xalapa /Rafael Lucio, with its full complement of species to illustrate how community structure
can change seasonally within a region.
Fungal community structure at the regional scale was
tested against a null model to determine whether
communities were assembled at random (question 3).
A community matrix with species presence-absence was
created for each bimester for each region. The rows of
each matrix represent the species, while the columns
represent the bimesters within each region. Each matrix
was analyzed separately using the C-score index (Stone
and Roberts 1990, 1992, Gotelli 2000). The C-score
index measures the average number of checkerboard
units between all possible pairs of species. A checkerboard unit is any sub-matrix of the form [0 1, 1 0]:
species A present in region 1 and species B present in
region 2. The larger the resulting C-score value, the less
likely there is a pair-wise species co-occurrence. Each
species occurrence is randomly re-shuffled within each
row of the matrix, and the model ranks the regions
suitability relative to the observed species richness
ranking. Caution should be taken when interpreting
these results because the C-score index may confound
aggregation and segregation in large matrices (Stone and
Roberts 1992). However, in our study, we were not
testing for aggregation or segregation of fungal species,
but departures from random community structure.
Therefore for regions that were not randomly assembled,
the C-score should be significantly smaller or larger than
expected by chance. We performed the C-score analysis
for each bimester with 1000 iterations using Ecosim
(Gotelli and Entsminger 2001). The difference between
the observed and expected C-score values gives the
degree of randomness or non-randomness, if the difference is small or large, respectively. We then tested
the effect of the environment (rainfall and vegetation
type) in structuring regional species assemblages. Each
bimonthly difference in C-score values (observed /
expected) was regressed against the average rainfall for
the respective time period.
The final analysis consisted of testing the relationship
between functional groups and community structure
1
0.8
0.6
0.4
0.2
0
0-20%
21-40%
41-60%
61-80%
81-100%
Proportion of sites
61
Fig. 4. a) Correspondence
analysis among regions. Each
data point represents a single
bimester in each region,
therefore representing the
seasonal variation within a
given region as well as the
spatial variation among
vegetation types (N/48 data
points). b) Correspondence
analysis of region 4 (Xalapa /
Rafael Lucio). Each data point
represents the community
structure at a given bimester,
represented by the numbers
(e.g. 1/January /February).
a
Tropical forest
+1.0
Alpine forest
b
5
Cloud forest
6
4
1
-1.0
-1.0
-1.0
Table 2. Correspondence analysis and MANOVA results on CA scores for macromycete diversity on eight regions divided into three
vegetation types. Cumulative variance (VAR) explained by the first three axes and eigenvalues (EIGEN) for the first two axes are
shown. VEG/MANOVA performed on each vegetation type using bimesters as treatment. TIME/MANOVA performed on each
bimester using vegetation as treatment. MANOVAs present the F values for each test. TF/Tropical forest; CF/Cloud forest;
AF/Alpine Forest. Degrees of freedom for MANOVAs are VEG/17, TIME/7. Statistical differences at */ B/0.05, **/ B/0.01,
***/ B/0.001.
VAR
EIGEN
VEGETATION TYPE
VEG
BIMESTER
TIME
62
AXIS 1
AXIS 2
AXIS 3
36.8
0.776
TF
0.87
1
8.89**
46.4
0.537
CF
0.73
3
28.55***
47.8
0.483
AF
9.7***
5
19.83**
2
17.56**
4
32.81***
6
33.74***
0.15
0.12
0.09
0.06
0.03
0
12
Functional groups
C-SCORE (OBS-EXP)
0.18
100
200
Rainfall (mm)
300
10
8
6
4
2
0
400
100
200
300
400
C-Score (OBS-EXP)
0.060
0.050
0.040
0.030
0.020
0.010
0.000
0
50
100
150
200
Rainfall (mm)
250
300
Functional groups
The number of functional groups present in a given
region was highly variable across seasons (Fig. 6a). For
example, in the dry months most of the species present
are lignicolous due to the perennial character of the fruit
body (except Pleurotus djamor and other agarics), while
most saprobe and ectomycorrhizal species fruit in the
wet months. However, the number of functional groups
present in a region was not dependent on rainfall
(Fig. 6a; DF/17, F/0.13, p /0.72). When incorporating the number of species per functional group by way of
the Simpson index, there was a significant negative
relationship with rainfall (Fig. 6b; DF/17, F /5.47,
R2 /25.5, p/0.03). In other words, at high rainfall
levels, most species belonged to one or few functional
groups of the many groups that were present. At low
ECOGRAPHY 29:1 (2006)
Rainfall (mm)
0.070
1.2
1
0.8
0.6
0.4
0.2
0
0
100
200
300
400
Rainfall (mm)
Role of temperature
Regions differ in temperature regimes, alpine forests
presenting the coolest monthly mean temperatures and
tropical forest the warmest (11 and 248C respectively). It
is interesting to note that temperature does not have the
same influence on community structure as rainfall. We
conducted the same regressions between C-scores or
functional groups and temperature and we found no
relationship (DF /17, R2 /0.09 and 0.03 respectively,
p /0.4). This is probably due to the small range in
temperatures (Fig. 2), which tend to fluctuate more at a
microhabitat scale than at the regional scale.
Discussion
The results from this study suggest that fungal community structure is dependent on the vegetation type, and
that seasonal rainfall may influence community similarities among regions. Although rainfall and temperature
patterns are similar across all eight regions, the magnitude of each varies throughout the year. The eight
regions presented similar distributions of common and
rare fungal species, regardless of vegetation type. How63
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