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Cullen Taplin
Box 355020
University of Washington
Seattle, WA 98195
Abstract
gastropod inhabiting the intertidal zone along the west coast of North America. In recent
decades, populations along the California coast began to experience significant declines. A
bacterial infection has been found to be the major contributor to black abalone mortalities. The
pathogen, a Rickettsiales-like organism (RLO), has caused mortalities exceeding 99% in some
identify immune-related genes in the black abalone, expressed sequence tags from other species
of Haliotis were functionally annotated and used to design primers for polymerase chain reaction
(PCR) amplification. One novel gene identified was a toll-interacting protein (TOLLIP)
transcript (GenBank Accession EU408785). This protein is involved in the toll-like receptor
signaling (TLR) pathway, a conserved pathway producing proinflammatory cytokines. The goal
of this research was to identify other TLR pathway genes in black abalone and to characterize the
TOLLIP gene by obtaining sequence information, examining gene expression from two
populations, and correlating that expression to bacterial loads. Isolated PCR products were
sequenced and identified using sequence comparison techniques (i.e. BLAST). Quantitative real-
time PCR (qPCR) was performed on digestive gland and gill tissues of RLO infected and control
abalone. Bacterial loads were also quantified using qPCR methods and then correlated to gene
expression. Results showed several other TLR genes are present in black abalone indicating the
presence of the TLR pathway. Sequence comparison of TOLLIP from black abalone was shown
to have high similarity to other Haliotis species. No significant differences were revealed in gene
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Introduction
Black abalone (Haliotis cracherodii) are single shelled gastropods inhabiting the
intertidal zone at depths of 0 – 5 m (Lindberg, 1992). Their distribution is confined to the west
coast of North America, extending from Coos Bay, Oregon to Cabo San Lucas, Baja California.
The adult black abalone can reach a shell size of 200 mm (Parker et al., 1992). Economically,
abalone are the most commercially important species of gastropods in the aquaculture industry
(Chen et al., 2005). In 2002, the United States produced 169 metric tons of cultured abalone.
Worldwide, 22,677 metric tons of abalone were produced, including cultured and fisheries
pressure was one factor, as laws restricting their harvest were repealed in 1968 (Parker et al.,
1992). Despite the fact that black abalone are less valuable than red (H. rufescens) and pink
(H. corrugata) abalone as their meat is considered lesser quality, harvesting of wild black
abalone reached 870 metric tons in 1973 (Parker et al., 1992). Overfishing of abalone in
population declines. Experiments with pentachlorophenol, a widely used pesticide for preserving
lumber and an EPA priority pollutant, and abalone show a decrease in energy production and
temperature due to large El Niño events and climate change. Warmer water has been shown to
considerably stress abalone and increase susceptibility to bacterial disease (Lee et al., 2001). El
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Niño events in 1957, 1982, and 1997 caused significant black abalone mortalities along the
California coast due to the presence of warmer ocean water (Moore et al., 2000).
The largest component to black abalone mortalities along the California coast is
hypothesized to be a bacterial pathogen that causes withering syndrome (WS). The bacterium has
(RLO). Initially it was thought that RLO infects the tissue lining the gastrointestinal tract,
interfering with enzymes in the gut. However, recently it was shown that RLO infects the post-
esophagus. Then, through mechanisms that have yet to be described, it causes a change in tissue
morphology of the digestive gland (Friedman, personal communication). The bacterium prevents
normal digestion of nutrients and forces the animal to rely on glycogen stores from its relatively
large foot muscle. Extensive exposure to RLO causes the shrinking of the foot muscle, inability
to adhere to the substrate, and ultimately death (Gardner et al., 1995). The signs of WS were
noted in 1984 from commercial divers and recognized by scientists in 1987 from populations
along Santa Cruz Island (Culver and Richards, 1992). Since the discovery of WS, mass
mortalities exceeding 99% have been recorded along the California Channel Islands (Figure 1)
(Haaker et al., 1992). WS has been found at seven of the eight island populations (Vanblaricom
et al., 1993).
The large mortalities of black abalone due to RLO infection have formed populations that
are more resistant to the bacterium. Abalones from San Nicolas Island, an island in southern
California, are more resistant to RLO through natural selective pressures than abalones in areas
of northern California, like Carmel and Monterey Bay. Selective pressure due to long-term
exposure to the disease is the causes of differing resistance among populations (Johnson, 2007).
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Figure 1: Map of the California coast. Blue circles indicate the two sample locations. Map adapted from Friedman et al., 1997.
The current understanding of black abalones’ immune response to RLO is not well
understood (Hooper et al., 2006). However, increased stress has been shown to cause a decrease
in immune function, indicating that environmental contaminates and increased water temperature
make abalone more susceptible to bacterial infections (Hooper et al., 2006). Abalones, like all
invertebrates, only have an innate immune system and therefore have no ‘memory’ of previous
infections (Arancibia, et al., 2007). Several immune components are conserved among
invertebrates, but amount that different invertebrates use on the particular components can vary.
Some common components include toll-like receptors, lectins in non-self recognition, and the
related genes in black abalone. Several genes were found including toll-interacting protein
(TOLLIP), catalase, and plancitoxin. TOLLIP is a key component in the toll-like receptor
pathway (Figure 2). These receptors, which are well conserved in the animal kingdom, recognize
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molecules and patterns produced exclusively by pathogens and bacteria (Singh et al., 2003). The
patterns and molecules detected are critical to the survival of the microbes, which prevents
resistance due to mutations. Lipopolysaccharides, peptidoglycan, and lipoteichoic acid are a few
examples of recognizable molecules by toll-like receptors (Singh et al., 2003). Animals have
several toll-like receptors; eleven have been identified in humans, nine in Drosophila. The main
Figure 2: The current understanding of the toll-like receptor pathway and the individual receptor specificity with TOLLIP highlighted. Figure
from Singh et al., 2003.
The goal of this research was to both confirm the presence of the TLR pathway and
characterize the TOLLIP gene in black abalone. To confirm the TLR pathway was present in
black abalone, related genes were discovered through functional relationships. Characterization
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of TOLLIP was conducted by obtaining genetic sequence, comparing differential TOLLIP gene
expression between resistant and susceptible populations, and correlating bacterial loads to
TOLLIP gene expression. For gene expression experiments, gill and digestive gland tissue were
examined. From this research, abalone farms, breeding programs, restoration efforts and
Black abalone samples were provided by Dr. Carolyn Friedman’s lab. Her lab maintained
black abalone in control and regularly RLO exposed treatments. Furthermore, her lab had two
populations of black abalone; both split into the control and exposed groups. One population was
from San Nicolas Island, CA (the resistant population) and the other was from Carmel, CA (the
susceptible population). There were approximately 40 abalone total between the four treatment
groups.
To discover TLR pathway genes in black abalone, a system called PANTHER (Protein
classifies genes based on their function and is able to predict the function of un-described genes
based on nucleotide relationships. Related genes were identified by searching within the TLR
Gill tissue was collected from an abalone in a control group. Total RNA was isolated
using an MO Bio PowerSoilTM RNA isolation kit (MO Bio Laboratories, Inc.). The kit used
various centrifuge steps, RNA capture columns and included a chloroform extraction. The
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The coding sequence of TOLLIP was first investigated. Primers were designed from the
TOLLIP EST (gene accession number CX726806) of the closely related pacific abalone (H.
discus) (Figure 3). The first primers designed were 806F and 806R. After successful sequencing
of the partial gene using these two primers, 866F was designed to capture more upstream
sequence (Table 2). Polymerase chain reaction (PCR) on cDNA was conducted to amplify the
gene (Table 3 and 4). Purification of the band was done by cutting it out from the gel and using
Ultrafree®-DA spin columns (Millipore Corporation). Samples were sequenced through High-
Genomic sequencing of TOLLIP was carried out by extracting total genomic DNA and
PCR was conducted using Advantage® HD Polymerase Mix to amplify the large gene fragment
(Clontech Laboratories, Inc.) (Tables 3 and 4). Again, primers 806F and 806R were used.
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Figure 3: Map of the TOLLIP EST from the pacific abalone, a closely related species. Boxes indicate primers:
866F in red, 806F in green, and 806R in blue. Punitive introns are labeled with blue “I”.
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TOLLIP Gene Expression
Using the methods described above, cDNA was made from two tissue sources. Digestive
gland tissue was isolated from twenty abalone (five from each treatment group) five months from
the start of the experiment. Gill tissue was isolated eight months after beginning the experiment
and three abalone were taken from each treatment. Quantitative real-time PCR (qPCR) was
16S RNA values to compare relative abundance of TOLLIP. Real-time PCR miner was used to
For correlations of TOLLIP gene expression to bacterial loads, both digestive gland and
gill tissues from RLO exposed abalone were examined. Bacterial loads were provided from Nate
Results
Several TLR related genes were identified through PANTHER (Table 5). Those of most
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Obtaining TOLLIP Sequence
The partial coding sequence of TOLLIP in black abalone was successfully obtained and
was submitted to GenBank. When compared to the Pacific abalone’s TOLLIP gene, black
abalone’s TOLLIP gene shows 97.5% similarity in the nucleotide sequence and 99.5% in the
protein sequence (Figure 4). The genomic sequence of the TOLLIP gene was isolated in gel
electrophoresis. However, because of its large size (>10kbp), sequencing was not carried out due
to time restrictions. Lastly, comparisons were made with the sea urchin’s (Strongylocentrotus
purpuratus) genomic TOLLIP sequence. Six punitive introns in the abalone TOLLIP sequence
Figure 4: TOLLIP coding sequence comparisons of the Pacific abalone and black abalone.
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Comparing Differential TOLLIP Gene Expression
Figure 5 displays TOLLIP gene expression levels and standard errors for the four
treatment groups and two tissue examined. For both tissues, two-way ANOVA values for each
Figure 5: TOLLIP gene expression levels for two tissues from four treatment groups.
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Correlating Bacterial Loads to TOLLIP Gene Expression
Correlations of Bacterial loads to TOLLIP expression in both gill and digestive gland
tissues are presented in Figure 6. Each tissue was first examined with all exposed samples and
then examined for each location. Linear regressions were also calculated (Table 7).
Discussion
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Discovering Related TLR Genes
As expected, gene identification through PANTHER indicates that the TLR pathway is
present in black abalone. Furthermore, these genes indicate an immune function for the TLR
pathway. Several kinases and proteases, a toll like receptor 9, MyD88, and TNF receptors
support this conclusion. These results are encouraging, as gene identification in black abalone
has received little attention. Each of the genes identified here could be of interest for further
The high similarity for a partial coding region of the TOLLIP gene compared to other
abalone species also matched expectations. Animals within the same genus are expected to have
similar genomes. However, another reason for the high similarity could be that the TOLLIP
primers used were designed from an expressed sequence tag (EST) from a pacific abalone. By
their nature, ESTs are typically conserved regions of a gene. Nonetheless, the isolated sequence
of TOLLIP from black abalone is novel as little sequence information is available for the species.
As presented in Table 6, the differences in TOLLIP expression isolated from gill and
digestive gland tissues among the four treatments were not significant. For both tissues, the lack
of statistical power from small sample sizes among treatment groups could explain this result.
Another explanation for non-significant results in digestive gland tissue, especially the
San Nicolas Island population, could be it is an unrelated tissue as far as RLO infection is
concerned. The digestive gland was chosen for study because originally it was believed to be the
target of RLO infection. However, only recently was it discovered that RLO actually infects the
post-esophagus and causes a change in tissue morphology of the digestive gland. Therefore, an
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immune response in the digestive gland is not expected. Furthermore, digestive gland was
harvested five months after the beginning of the experiment. Assuming RLO infection occurred
soon thereafter, it may be that the TLR pathway is useless for the animal five months later. The
TLR pathway is a first line of defense by signaling the presence of a pathogen. Once the abalone
has been infected, it may revert to other immune response systems to fight the infection. Lastly,
abalone from San Nicolas Island may have developed or rely more heavily on a separate method
While gene expression was not significant, a pattern in gill tissue seems to emerge that
could be of interest. TOLLIP gene expression in control samples appears to be higher in control
samples than RLO exposed samples for both populations. While this was opposite of
expectations, one possible explanation is that the TLR pathway in RLO exposed abalone
treatments is more active and transcribing gene transcripts more quickly. Quantitative PCR
measures gene transcripts, not proteins produced. Further studies are needed to support this
explanation.
As discussed above, a similar pattern of lower TOLLIP transcript at higher bacterial loads
can be seen in gill tissue. With digestive gland tissue, there is no detectable pattern, further
supporting the possibility that RLO infection is not associated with digestive gland. When
examined by population, no consistent pattern could be detected. Again, low sample sizes are
Conclusions
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The study provided insight into the toll-interacting protein in black abalone and function
of the toll-like receptor pathway. Partial coding sequence and genomic DNA for the TOLLIP
gene was isolated – a first for this species of abalone. Several TLR pathway molecules were
identified, confirming the presence of the pathway in black abalone. Lastly, data from gene
expression studies suggests that the TLR pathway is active in the gill tissue. With these results,
future research on black abalone’s immune response to RLO infection could examine TOLLIP
expression in other tissues (notably the post-esophagus), explore other molecules in the TLR
pathway, and compare laboratory gene expression results to expression found in wild
populations.
Acknowledgements
I would like to thank Dr. Carolyn Friedman and her lab staff for providing abalone tissue
samples, giving insight into RLO infection, and for allowing the use of figures for this paper and
a previous oral presentation. Thanks goes to Sam White for guidance on experiment protocols
and Dr. Steven Roberts for being my faculty mentor throughout the research. Lastly,
acknowledgements go to Sea Grant California and NOAA for providing partial funding.
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