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Sample Preparation
Materials to be viewed in an electron
microscope generally require processing to
produce a suitable sample. This is mainly
because the whole of the inside of an electron
microscope is under high vacuum in order to
enable the electron beam to travel in straight
lines. The technique required varies
depending on the specimen, the analysis
required and the type of microscope:
Imaging
The beam of electrons from the electron gun is focused into a small, thin,
coherent beam by the use of the condenser lens. This beam is restricted by
the condenser aperture, which excludes high angle electrons. The beam
then strikes the specimen and parts of it are transmitted depending upon
the thickness and electron transparency of the specimen. This transmitted
portion is focused by the objective lens into an image on phosphor screen
or charge coupled device (CCD) camera. Optional objective apertures can
be used to enhance the contrast by blocking out high-angle diffracted
electrons. The image then passed down the column through the
intermediate and projector lenses, is enlarged all the way.
The image strikes the phosphor screen and light is generated, allowing the
user to see the image. The darker areas of the image represent those areas
of the sample that fewer electrons are transmitted through while the
lighter areas of the image represent those areas of the sample that more
electrons were transmitted through.
Diffraction
The path of a beam of electrons in a TEM from just above the specimen
and down the column to the phosphor screen. As the electrons pass
through the sample, they are scattered by the electromagnetic lens
Image recording
The electron image is monochromatic and must be
made visible to the eye either by allowing the electrons
to fall on a fluorescent screen fitted at the base of the
microscope column or by capturing the image digitally
for display on a computer monitor. Computerized
images are stored in a format such as TIFF or JPEG and
can be analyzed or image-processed prior to
publication. The identification of specific areas of an
image, or pixels with specified characteristics, allows
spurious colours to be added to a monochrome image.
This can be an aid to visual interpretation and teaching
and can create a visually attractive picture from the raw
image.
Positive staining
Details in light microscope samples can be enhanced by stains that absorb light;
similarly TEM samples of biological tissues can utilize high atomic number stains
to enhance contrast. The stain absorbs electrons or scatters part of the electron
beamwhich otherwise is projected onto the imaging system. Uses heavy metals
such as lead and uranium to scatter imaging electrons and thus give contrast
between different structures, since many (especially biological) materials are
nearly "transparent" to electrons (weak phase objects).Heavy metal salts attach
to various organelles or macromolecules within the sections toincrease their
electron density and they appear dark against a lighter background.Uranyl ions
react strongly with phosphate and amino groups so that nucleic acids andcertain
proteins are highly stained. Lead ions bind to negatively charged
componentsand osmiumreacted areas (membranes).Grids are stained with
heavy metals, such as uranyl acetate and lead citrate. The grids,with the
specimen side down, remain in 4% uranyl acetate for 25 minutes and are then
rinsed in a series of four beakers of pure water. After rinsing, the grids are then
stained with 1% lead citrate for 5 minutes, rinsed again in pure water, and stored
in a grid box.
Immunogold labelling
This technique uses antibodies to detect the intracellular
location of structures of particular proteins by electron
microscopy. Ultrathin sections are labelled with antibodies
against the required antigen and then labelled with gold
particles. Gold particles of different diameters enable two or
more proteins to be studied EMLab can offer postembedding
immunogold labelling of samples in resin (Epoxy, LR White and
Lowicryl) and on frozen hydrated ultrathin sections
(Tokuyasumethod).The investigator must supply the primary
and secondary antibodies. The investigator should do
immunolabelling at the fluorescent light microscopy level
before attempting it at the EM level
Applications
The SEM is routinely used to generate high-resolution
images of shapes of objects (SEI) and to show spatial
variations in chemical compositions: 1) acquiring
elemental maps or spot chemical analyses using EDS,
2)discrimination of phases based on mean atomic number
(commonly related to relative density) using BSE, and 3)
compositional maps based on differences in trace
element "activitors" (typically transition metal and Rare
Earth elements) using CL. The SEM is also widely used to
identify phases based on qualitative chemical analysis
and/or crystalline structure. Precise measurement of very
small features and objects down to 50 nm in size is also
accomplished using the SEM. Backescattered electron
images (BSE) can be used for rapid discrimination of
phases in multiphase samples. SEMs equipped with
diffracted backscattered electron detectors (EBSD) can be
used to examine microfabric and crystallographic
orientation in many materials.
Limitations
Samples must be solid and they must fit into the microscope chamber.
Maximum size in horizontal dimensions is usually on the order of 10 cm,
vertical dimensions are generally much more limited and rarely exceed 40
mm. For most instruments samples must be stable in a vacuum on the
order of 10-5 - 10-6 torr. Samples likely to outgas at low pressures (rocks
saturated with hydrocarbons, "wet" samples such as coal, organic
materials or swelling clays, and samples likely to decrepitate at low
pressure) are unsuitable for examination in conventional SEM's. However,
"low vacuum" and "environmental" SEMs also exist, and many of these
types of samples can be successfully examined in these specialized
instruments. EDS detectors on SEM's cannot detect very light elements
(H, He, and Li), and many instruments cannot detect elements with
atomic numbers less than 11 (Na). Most SEMs use a solid state x-ray
detector (EDS), and while these detectors are very fast and easy to utilize,
they have relatively poor energy resolution and sensitivity to elements
present in low abundances when compared to wavelength dispersive xray detectors (WDS) on most electron probe microanalyzers (EPMA). An
electrically conductive coating must be applied to electrically insulating
samples for study in conventional SEM's, unless the instrument is capable
of operation in a low vacuum mode.