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Biotechnology for the acceleration of carbon dioxide


capture and sequestration
Christopher K Savile and James J Lalonde

The potential for enzymatic acceleration of carbon dioxide effects. While energy production technologies exist to
capture from combustion products of fossil fuels has been limit or even eliminate carbon dioxide emission, fully half
demonstrated. Carbonic anhydrase (CA) accelerates post of the electricity in the United States is generated from
combustion CO2 capture, but available CAs are woefully the combustion of cheap and abundant coal, and coal
inadequate for the harsh conditions employed in most of these combustion is responsible for 40% of fossil fuel derived
processes. In this review, we summarize recent approaches to CO2 emissions worldwide.
improve CA, and processes employing this enzyme, to maximize
the benefit from this extremely fast biocatalyst. Approaches to Thus, CO2 capture and sequestration (CCS) has been
overcoming limitations include sourcing CAs from thermophilic identified as the critical enabling technology to reduce
organisms, using protein engineering to evolve thermo-tolerant CO2 emissions significantly, while allowing the continued
enzymes, immobilizing the enzyme for stabilization and use of coal [6]. The position of equilibrium of reaction (1)
confinement to cooler regions and process modifications that is far to the left, so CCS processes employing CA, must do
minimize the (thermo-, solvent) stress on the enzyme. so in either an alkaline capture solvent approach (e.g.
aqueous monoethanolamine (MEA), potassium carbonate
Address or methyldiethanolamine (MDEA)) to neutralize the
Codexis, Incorporated, 200 Penobscot Drive, Redwood City, CA 94063, proton released or must use a biomineralization approach
USA
in which high levels of divalent calcium or magnesium
Corresponding author: Lalonde, James J (james.lalonde@codexis.com) precipitate CO2 as solid carbonate.

Current Opinion in Biotechnology 2011, 22:818823 Use of CA in solvent-based PCCC


Chemical absorption with regenerable alkaline aqueous
This review comes from a themed issue on
solvents is considered the nearest term option for post
Chemical biotechnology
Edited by Guo-Qiang Chen and Romas Kazlauskas combustion CCS [7]. In this process (Figure 2), CO2 is
removed from the flue gas stream in the absorber column
Available online 5th July 2011 and then desorbed in a heated stripper column to give
0958-1669/$ see front matter
relatively pure CO2 for compression and storage. The
Published by Elsevier Ltd. challenge facing these capture processes is in energy loss
in desorption. Solvents such as MEA tend to bind CO2
DOI 10.1016/j.copbio.2011.06.006 tightly such that the parasitic energy loss in desorbing the
CO2 would result in a near doubling of the cost of
electricity [8].
Introduction
Carbonic anhydrase (CA, E.C. 4.2.1.1) is among the fastest CA has been shown to facilitate the use of aqueous
known enzymes, catalyzing the hydration of CO2 into solvents with a far lower heat of desorption (e.g. hindered
bicarbonate and a proton at turnover numbers approaching and tertiary amines), thus enabling a far lower energy
106/s (reaction (1)). The enzyme is ubiquitous in Nature penalty on CCS [9]. Absorption of CO2 tends to be
(mammals, plants, algae and bacteria), and is an archetypal slower in these solvents and thus requires the use of an
example of convergent evolution [1], with at least five accelerant such as CA. The poor stability and activity of
distinct classes: a, b, g, d and z which bear little structural naturally derived CA under the harsh conditions of these
similarity, but all employ an active site divalent zinc ion or processes i.e. temperatures from 50 to over 1258C, high
related metal for catalysis (Figure 1) [2], Central to the concentrations of organic amine, trace contaminants such
hydration mechanism is the nucleophilic attack of a Zn(II) as heavy metals, and sulfur and nitrogen oxides, have
bound hydroxide on CO2 [3], Recently CA enzymes have limited their use. Approaches to overcoming these limita-
been identified as having potential to accelerate CO2 tions have included sourcing CAs from thermophilic
capture from large combustion emitters [4]: organisms, using protein engineering techniques to create
thermo-tolerant enzymes [10,11], immobilizing the
CO2 H2 O HCO3  H (1) enzyme (for both stabilization and restriction to the cooler
Overwhelming evidence has shown that CO2 emission process zones) or process modifications such as cooling of
from the combustion of fossil fuels is a major contributor the flue gas. Small molecule analogs of CA have been
to global climate change with potentially devastating reported with potentially higher stability than proteins,

Current Opinion in Biotechnology 2011, 22:818823 www.sciencedirect.com


Biotechnology for CO2 capture and sequestration Savile and Lalonde 819

Figure 1

(a) (b) (c) (d)

Current Opinion in Biotechnology

Depiction of the X-ray crystal structures of four carbonic anhydrases from different families [5]. (a) Type II a-class carbonic anhydrase from Homo
sapiens (1ca2.pdb). (b) The tetrameric form of the b-class carbonic anhydrase from Mycobacterium tuberculosis (2a5v.pdb). (c) The trimeric form of a
g-class carbonic anhydrase from Thermosynechococcus elongatus (3kwc.pdb). (d) The z-class carbonic anhydrase from Thalassiosira weissflogii
(3bob.pcb). A crystal structure of a d-class CA has not been reported.

Figure 2

Scrubbed
Pure CO2 (>90%) for
Flue Gas Compression and
Storage
Lean Solvent

CO2 CO2
Absorber Stripper
Column Column
Enzyme Enzyme

Rich Solvent
Steam
Flue Gas
with CO2

40-60C Higher Heat


Current Opinion in Biotechnology

Solvent-based PCCC schematic.

but their rates of acceleration tend to be orders of mag- accelerate capture in solvents such as MEA, MDEA, and
nitude less than the enzymes [12,13,14,15]. Very piperazine [18]. The conditions described are at near
recently, however, a Ni(II) complex has been reported ambient temperatures and dilute aqueous solvents, pre-
with rates within an order of magnitude of the fastest CAs, sumably due to the sensitivity of the human enzyme.
albeit in nonaqueous media [16]. Generally, these CA accelerated capture processes
employ immobilized CA in contact with CO2. CO2
Because of the economic impact of the problem and the Solution describes the use of CA in various bioreactor
multiple industrial applications, the field is dominated by formats including a packed column [9] triphasic bubble
patents rather than publications in the open scientific reactor, a tower reactor and a spray absorber [19]. Others
literature. CO2 Solution (Quebec, Canada) has a patent have described process formats for capture of CO2 from
portfolio on the use of CAs for CO2 capture from combus- combustion sources using CAs entrapped in a gas per-
tions sources. Besides covering carbon capture from fossil meable membrane [2022].Thermostable CAs for sol-
fuel combustion [17], they describe the use of CA to vent-based PCCC

www.sciencedirect.com Current Opinion in Biotechnology 2011, 22:818823


820 Chemical biotechnology

Given the high temperature for regeneration in a solvent- stability in the presence of high concentrations of alkaline
based capture system, thermophilic organisms represent a capture solvents at high temperatures. To our knowledge,
source of stable CAs. Three CAs from thermophilic there are no reports in the literature of CA activity or
organisms have been the primary focus of most bio- stability in amine-based captures solvent such as MDEA
chemical studies. A g-class CA from Methanosarcina ther- or AMP at process relevant concentrations (e.g. 50%, v/v)
mophila (CAM) [23], a b-class CA from Methanobacterium and temperatures (>458C).
thermoautotrophicum (CAB) [24] and a g-class CA from
Pyrococcus horikoshii [25]. CAM shows optimal activity at A better approach might be to engineer, or evolve, a CA
558C, with kcat values approaching 105/s. CAM is a rela- for activity and stability under the nonnatural process
tively stable CA it shows 50% residual activity after conditions it is expected to operate. The goal would be to
15 min at 708C and is inactivated at 758C [26]. CAB shows generate a soluble CA biocatalyst capable of catalyzing
optimal activity at 708C. It is more thermostable than CO2 hydration in capture solvents at absorber tempera-
CAM, showing 50% residual activity after 15 min at tures (45608C) and, in an ideal case, surviving the high
858C and inactivation at 908C, but has a lower kcat value desorber temperatures (>1008C). Codexis is applying
of 104/s [27]. The activity of CA from P. horikoshii has not directed evolution technology to increase the activity
been fully characterized, but its host organism shows and stability of CAs by screening a wide range of geneti-
optimal growth at 988C [23]. By comparison, Human cally diverse biocatalysts using high through-put (HTP)
CA II shows optimal activity at 378C and is inactivated screens that closely mimic solvent-based PCCC process
above 508C [26]. However, it is an extremely fast enzyme conditions in MDEA and other amine solvents. Initial
with a kcat of 106/s [27]. evaluation of 50 wild-type CAs identified a CA from a
mesophilic organism with higher activity and stability in
Several heat-stable CAs for extraction of CO2 from CO2- MDEA than human CAII. It was inactivated at tempera-
containing media have been reported [28,29]. An a- tures above 408C in MDEA, but after four rounds of
class CA from Bacillus clausii showed higher thermostabil- directed evolution, the temperature of half-inactivation
ity than CAM with 17% residual activity (via the Wilbur- was increased by >40828C in 5 M MDEA pH 11.8 and
Andersen assay) after 15 min at 808C in 1 M sodium the half-life (t1/2) was increased by ca. five orders of
bicarbonate pH 8.05. At 0.6 g/L enzyme loading, this magnitude to 20 hours in 4.2 M MDEA at 758C
CA could extract >99% of CO2 from a 15% CO2 gas (Figure 3) [31]. Strain engineering of an industrial
stream versus only 33% removal without CA. The CA also enzyme production host for a high titer fermentation
increased the CO2 extracted with MEA solutions by process will allow large-scale production of the biocatalyst
twofold, albeit at the low MEA concentration of 1%. at low cost in order to meet the predicted volumes.
CA from the thermophilic organism Caminibacter media-
tlanticus DSM 16658 had a melting temperature of 1098C Immobilization of CA
at pH 9 and retained 40% of its original activity after Immobilization of CA is the most common method to
15 min in 1 M sodium bicarbonate at 1008C, and also both stabilize the enzyme and to limit exposure to dena-
increased the amount of CO2 extracted with 1 M sodium turing conditions in CCS processes. Immobilization has
bicarbonate pH 9 solutions [30]. While thermophiles been reported on a number of solid supports including
represent a good source of thermostable CAs, naturally polyamide [32], n-vinyl formamide [33], chitosan [34],
occurring CAs typically do not show suitable activity or and alkyl sepharose [35].
Figure 3

1000000 75C (24 h), 15X 100


%Residual Activity

100000 65C (24 h), 10X 80 Rd 3 hit


Compounded Fold
Improvement

10000 53C (24 h), 40X


60
Rd 4 hit
1000
50C (24 h), 70X 40
100

10 20

1 0
1 2 3 4 0 12 24 36 48
Evolution Round Time (h)
Current Opinion in Biotechnology

(a) Directed evolution of CA for increased stability to MDEA. (b) Stability of the round 4 CA evolvant at 758C in 4.2 M MDEA.

Current Opinion in Biotechnology 2011, 22:818823 www.sciencedirect.com


Biotechnology for CO2 capture and sequestration Savile and Lalonde 821

One strategy to limit the activity loss on immobilization erate temperature (10858C) [47] gas flows at low to high
has been to immobilize in high volume swellable gels pressure with CO2 concentrations from <1% to >20%. In
[36,37], foams [38] or to stabilize as soluble polymer a related study, entrapment of the enzyme in a contained
protein conjugates [39]. Alternatively, high surface/ liquid membrane phase showed good preservation of
volume ratio materials such as microparticles and nano- activity [48]. The design may provide cost and perform-
particles [40,41] have been used. Interestingly, simple ance advantages over amine scrubbing systems, but there
acetylation of a CA was shown by Whitesides to increase appear to be some serious drawbacks. These membrane
kinetic resistance to denaturation, presumably by altering systems employ a vacuum force on the permeate side of
the surface charge [42]. the membrane to drive diffusion which adds operational
cost and added CO2 compression costs versus solvent
The activity lost on immobilization of CA can be sub- desorption methods. In addition, the permeator is unable
stantial; however, this effect is often obscured in most to tolerate heavy metals such as mercury and only able to
studies by the use of surrogate assays. Characterization of tolerate 7 ppmv SOx, while the typical SOx concentrations
immobilized CA has typically been done using p-nitro- in flue gas is >300 ppmv. Thus, heavy metals and SOx
phenyl ester hydrolysis. While convenient, this esterase must be reduced by a pretreatment. Even with pretreat-
assay is only suitable for the a-class CAs. This solution ment, however, membranes are sensitive to particulates
phase assay does not measure the impact on gasliquid and may require exchange or cleanup to limit fouling.
solid contact [43] and diffusional limitations created by
entrapping the enzyme in a solid form. True gasliquid
activity determinations using a wetted-wall column (JT
Use of CA in biomineralization
CA is part of the biomineralization process in the for-
Cullinane, Thermodynamics and kinetics of aqueous
mation of the exoskeleton of mollusks. This biological
piperazine with potassium carbonate for carbon dioxide
process has been used as a model for CO2 fixation in the
absorption, Dissertation, Austin, TX: The University of
form of carbonate salts of divalent metals. Lee has
Texas at Austin, 2005) or a stirred cell reactor (SCR) [44]
recently reviewed the use of CA for CCS and biominer-
are much better measures of the enzyme performance
alization [49]. Very recently, a strategy introducing the
under carbon capture process conditions. Evaluation of
use of CA to accelerate in bioweathering of silicates was
immobilization on nylon microparticles or as a cross-
reported in which CA is used to accelerate to hydration of
linked enzyme aggregate (CLEA) using gaseous CO2
CO2 and subsequent precipitation of Mg(II) released
in a packed column or hydration cell showed that a
from weathering of magnesium silicate rock [50].
smaller particle size favors a higher level of gas/liquid/
solid contact [45].
Concluding remarks
Membrane-based CO2 extraction with CAs The potential for acceleration of carbon dioxide capture
Biomimetic membrane-based technology has been from combustion products of fossil fuels has been clearly
employed for extracting CO2. Researchers from the com- demonstrated. A summary of these approaches is given in
pany carbozymes have described a CA permeator that Table 1. Early work using readily available CAs from
consists of two hollow fiber microporous membranes mammalian sources has now largely been replaced by
separated by a thin liquid membrane [46]. The CA is more stable forms derived from thermophiles or directed
immobilized on the hollow fiber wall to maximize contact evolution approaches. These approaches impressively
with CO2 at the gasliquid interface and facilitate CO2 illustrate the potential of CA to accelerate CO2 capture
uptake into the liquid membrane by rapid conversion to under relevant process conditions. For real progress to
bicarbonate, and can enhance the rate of both absorption continue, however, careful attention should be paid to the
and desorption. This technology is applicable for mod- use of relevant metrics such as direct gas absorption

Table 1

Strategies to overcome stability limitations of carbonic anhydrase under PCCC conditions.

Strategy Potential benefits Potential drawbacks References


Sourcing CAs from thermophiles - High thermostability - Thermostable b-class and g-class CAs show slower [2327,28,29,30]
rates than mesophilic a-class CAs
- Poor activity in solvent and/or lower temperatures
Protein engineering - High activity - CAs may not be evolvable for extreme temperatures [11,31]
- High stability
Immobilizing CA for stabilization/ - Longer CA lifetime - No desorption benefit [9,3241,42]
confinement to cooler regions - Slower rates
Membrane systems that minimize - CA operates at - Fouling [4648]
stress on CA ambient conditions - High energy penalty

www.sciencedirect.com Current Opinion in Biotechnology 2011, 22:818823


822 Chemical biotechnology

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