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Hepatology Research 2015; 45: 128141 doi: 10.1111/hepr.12386

Review Article

miRNA in hepatocellular carcinoma


Asahiro Morishita and Tsutomu Masaki
Department of Gastroenterology and Neurology, Kagawa University School of Medicine, Kagawa, Japan

Hepatocellular carcinoma (HCC) is the third leading cause of fragile sites. As for the relationship between miRNA and HCC,
cancer deaths worldwide. Despite improvements in HCC several studies have demonstrated that the aberrant expres-
therapy, the prognosis for HCC patients remains poor due to a sion of specic miRNA can be detected in HCC cells and
high incidence of recurrence. An improved understanding of tissues. However, little is known about the mechanisms of
the pathogenesis of HCC development would facilitate the miRNA-related cell proliferation and development. In this
development of more effective outcomes for the diagnosis review, we summarize the central and potential roles of
and treatment of HCC at earlier stages. miRNA are small, miRNA in the pathogenesis of HCC and elucidate new possi-
endogenous, non-coding, ssRNA that are 2130 nucleotides bilities that may be useful as diagnostic and prognostic
in length and modulate the expression of various target genes markers, as well as novel therapeutic targets in HCC.
at the post-transcriptional and translational levels. Aberrant
expression of miRNA is common in various human malignan- Key words: diagnostic and prognostic markers,
cies and modulates cancer-associated genomic regions or hepatocellular carcinoma, miRNA, therapeutic target

INTRODUCTION miRNA can promote the targeting and modulation of


more than 200 mRNA.6,7 In humans, a total of 2000

M IRNA ARE SMALL, interfering, non-coding RNA


that are 2130 nucleotides in length, and it has
been predicted that there are approximately 1000 of
miRNA have been discovered.8
Although their importance is recognized in regulating
protein-coding gene expression, the precise functions of
these sequences in the human genome.1 Each miRNA
miRNA remain elusive. It is now apparent that miRNA
negatively regulates its target genes by binding to mul-
play an important role in human carcinogenesis.6,912
tiple mRNA. Binding between miRNA and mRNA trig-
In addition, the expression of miRNA is generally
gers the RNA-mediated RNAi pathway, in which the
downregulated in tumor tissues compared with normal
mRNA transcripts are cleaved by an miRNA-associated
tissues, indicating that a subset of miRNA act as tumor
RNA-induced silencing complex (miRISC).2 In most
suppressors. Therefore, the discovery of miRNA has
animals, single-stranded miRNA act by binding to
expanded our knowledge of post-transcriptional gene
imperfectly complementary sites within the 3-
regulation during cancer development. Interestingly,
untranslated regions of their target mRNA, inhibiting
more than half of all genes that encode miRNA are
translation or initiating degradation via the miRISC.3
located at fragile sites or in cancer-associated regions of
Recruitment of the miRISC can modulate the expression
the genome,13 suggesting that miRNA may serve as diag-
of targeted protein-coding genes.4,5 Surprisingly, each
nostic markers or therapeutic targets. The first report of
altered miRNA expression in cancer involved a frequent
chromosomal deletion and two miRNA, miRNA-15
Correspondence: Profesor Tsutomu Masaki, Department of (miR-15) and miRNA-16 (miR-16), thought to target
Gastroenterology and Neurology, Kagawa University School of
Medicine, 1750-1 Ikenobe, Miki-cho, Kida-gun, Kagawa 761-0793,
B-cell lymphoma 2 (BCL-2), which is the anti-apoptotic
Japan. Email: asahiro@med.kagawa-u.ac.jp factor in chronic lymphocytic leukemia.14 Recent reports
Received 27 June 2014; revision 27 June 2014; accepted 1 July 2014. have shown that miRNA are associated with the

128 2014 The Authors.


Hepatology Research published by Wiley Publishing Asia Pty Ltd on behalf of The Japan Society of Hepatology.
This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs
License, which permits use and distribution in any medium, provided the original work is properly cited, the use is
non-commercial and no modifications or adaptations are made.
Hepatology Research 2015; 45: 128141 A. Morishita and T. Masaki 129

pathogenesis of various types of cancers,912 and these the modulation of miRNA may play an important role in
findings have increased our understanding of epigenetic the progression of HCC.
modification during oncogenesis.2
Several studies have recently reported a relation-
BIOGENESIS AND REGULATION OF miRNA
ship between miRNA and hepatocellular carcinoma
(HCC).12,1518 Among several miRNA implicated in HCC,
including miR-21, miR-221 and miR-222, the aberrant
levels of miRNA expressions were upregulated.12,16,17
S EVERAL STEPS ARE involved in the biogenesis
of miRNA: transcription, cleavage, export, further
cleavage, strand selection and interaction with mRNA
However, other miRNA, including miR-122a, miR-145, (Fig. 1).20 The genes encoding miRNA are primarily tran-
miR-199a and miR-223, were decreased in HCC com- scribed by RNA polymerase II into initial transcripts that
pared to normal tissues.15,19 Surprisingly, Huang et al. are then processed through the canonical pathway
have shown that, among aberrant miRNA in HCC, miR- or the mirtron pathway to form primary miRNA
338 affects several clinical features, such as tumor size, transcripts (pri-miRNA) that include one or more
tumornodemetastasis classification, vascular invasion hairpin structures.21 These pri-miRNA are capped at the
and intrahepatic metastasis.18 These studies suggest that 5-end and polyadenylated at the 3-end22 and then

Nucleus Cytoplasm

Genome DNA Translational repression mRNA degradation

Pol II
RISC

AGO RISC formation

Transcription

AGO Mature miRNA

Pri-miRNA
Unwinding Degradation
m7G AAAAA

miRNA duplex
Clevage
Clevage

Pre-miRNA
Exportin 5 Export
Drosha DGCR8 TRBP Dicer

Figure 1 Steps in biogenesis of miRNA. The primary miRNA (pri-miRNA) is transcribed from genome DNA mainly by RNA
polymerase II (Pol II). The DroshaDGCR8 complex cleaves and splices pri-miRNA into hairpin-like miRNA precursors called
pre-miRNA. These pre-miRNA are exported from the nucleus to the cytoplasm in an Exportin-5-Ran-guanosine-5-triphosphate
(GTP)-dependent manner. In the cytoplasm, Dicer and TRBP cleaves hairpin structure of pre-miRNA into mature miRNA. The
processed miRNA are then loaded onto the RNA-induced silencing complex (RISC) with Argonaute (Ago2) and are guided to their
mRNA targets for translational repression or mRNA degradation.

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Hepatology Research published by Wiley Publishing Asia Pty Ltd on behalf of The Japan Society of Hepatology
130 A. Morishita and T. Masaki Hepatology Research 2015; 45: 128141

cleaved into approximately 70-nucleotide (nt) hairpin- family of miRNA plays an important role by inhibiting
structured precursors (pre-miRNA) with a 5-phosphate the expression of zinc finger E-box-binding homeobox
and a 3-2-nt overhang by a multiprotein complex 1 (ZEB1) and survival of motor neuron protein-
that includes an RNase III enzyme named Drosha interacting protein 1 (SIP1), which act as transcriptional
and a dsRNA-binding domain protein (dsRBD) named repressors in epithelial cells, to regulate the epithelial to
DGCR8/Pasha.23 Subsequently, exportin-5 trans- mesenchymal transition; however, ZEB1 and SIP1 also
locates pre-miRNA from the nucleus to the cytoplasm suppress the miR-200 family, including miR-200a and
through a Ran-guanine-triphosphate (GTP)-dependent miR-200b, by binding their promoter regions.37 This
mechanism.24 These translocated pre-miRNA are cleaved result indicates that miRNA and their target molecules
by a second RNase III endonuclease named Dicer and are tightly regulated by each other at the transcription
the dsRBD proteins TRBP/PACT.25 Finally, one strand of level.
the pre-miRNA interacts with the Argonaute (AGO) Moreover, miRNA are also regulated by epigenetic
protein and is degraded in the RNA-induced silencing processes, such as DNA methylation and specific
complex that modulates mRNA degradation and trans- histone deacetylation. Seventeen of the 313 human
lational repression.26 miRNA were upregulated more than threefold after
In addition to the canonical miRNA pathway, some treatment with the chromatin-modifying drugs 5-aza-
miRNA are processed into miRNA-like molecules 2-deoxycytidine and 4-phenylbutyric acid. Among
in a Microprocessor-independent manner, including these miRNA, miR-127 was highly upregulated after
certain snoRNA,27 tRNA28 and endogenous shRNA.29 treatment.38 In addition, inhibiting histone deacetylases
Furthermore, more than 1 million Drosophila small- rapidly downregulated 22 miRNA and upregulated five
RNA sequences were recently generated using 454 miRNA.39
pyrosequencing, and these sequences identified 14 short Furthermore, miRNA expression is also controlled
introns with predicted hairpin structures.30 These short at the post-transcriptional level. A large fraction of
introns were named mirtrons after analyzing their miRNA genes are post-transcriptionally regulated,
characteristics. Primary mirtron precursors include including those of the Let-7 family.40 Individual miRNA
mirtronic introns and flanking exonic sequences that expression processed from the same pri-miRNA is occa-
typically lack the lower stem (11 bp) that is found in sionally different at the mature miRNA level.41 Initially
miRNA, which mediates their recognition and cleavage during post-transcriptional regulation, miRNA are pro-
via the Pasha (DGCR8)/Drosha complex.31 The AG cessed by Microprocessor, which consists of Drosha
splice acceptor of a typical mirtron adopts a 2-nt and the dsRNA-binding protein DGCR8 in the
3-overhang for these hairpins, allowing mirtronsto nucleus.23 A loss of Drosha or DGCR8 function leads to
enter the miRNA-processing pathway without Drosha- a decrease in pre-miRNA and mature miRNA.23 In the
mediated cleavage.32 cytoplasm, pre-miRNA that are exported from the
miRNA regulate various biological processes by nucleus in a Ran/GTP/Exportin-5-mediated event are
modulating specific mRNA, and their expression is further regulated by the RNase III enzyme Dicer to
tightly regulated in normal cells.29,33 Each miRNA can become mature RNA.40
potentially be controlled independently at the transcrip-
tional level by various regulators or at the epigenetic
MIRNA EXPRESSION AND
level via DNA methylation.3335 Interestingly, the regula-
HCC DEVELOPMENT
tory elements that control protein-coding genes, such as
CpG islands, TATA boxes, transcription factor II B rec-
ognition sites, initiator elements and histone modifica-
tions, are also found in the promoters of miRNA
M IRNA HAVE BEEN reported to influence the criti-
cal functions of cellular differentiation, prolifera-
tion, apoptosis, invasion and metastasis.42 The miRNA
genes,36 indicating that the transcription factors are expression profiles in tumors are different from those in
similar between protein-coding genes and miRNA. normal tissues and also vary according to the type of
Therefore, the expression of various processing compo- tumor. Interestingly, the direct targets of miRNA are also
nents is simultaneously regulated to modulate the activ- protein-coding genes of the cell cycle, apoptosis and
ity of mature miRNA. metastasis in HCC.43 Recently, microarray analysis has
In addition, miRNA can also autoregulate their own revealed that a subset of miRNA are up- and
transcription by controlling various transcription factors downregulated during the development of HCC.44
in positive or negative feedback loops. The miR-200 Reductions in the expression of miRNA are frequently

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Hepatology Research published by Wiley Publishing Asia Pty Ltd on behalf of The Japan Society of Hepatology
Hepatology Research 2015; 45: 128141 A. Morishita and T. Masaki 131

observed in HCC, and the targets of these down- miRNA was reduced in HCV patients.57 These data
regulated miRNA may be putative oncogenes. Con- suggest that there are distinct patterns in the miRNA
versely, some of the upregulated miRNA act as profiles between HBV and HCV infection. Several
oncogenic miRNA in HCC and may be targets of tumor reports demonstrated that miR-96 or miR-26 were sig-
suppressor genes. nificantly upregulated in HBV-related HCC tissues.52,58
miRNA are associated with various chronic liver dis- Takazawa et al. reported comprehensive miRNA pro-
eases, such as alcoholic liver disease,45 non-alcoholic files using sequencing methods that provided more
steatohepatitis (NASH)4648 and viral hepatitis.4951 In than 314 000 reliable reads from HCC tissue and more
addition to these chronic diseases, miRNA are also than 268 000 reliable reads from adjacent normal liver.
involved in the development of HCC. In alcoholic liver Bioinformatic-based analysis revealed several miRNA
disease, miR-217 induces ethanol-induced fat accumu- altered in HCC, including miR-122, miR-21 and miR-
lation in hepatocytes by inhibiting the expression 34a.59 Therefore, further studies that characterize the
of SIRT1.45 The miRNA miR-126, miR-27b, miR-182, miRNA associated with HBV-related HCC may yield a
miR-183, miR-199, miR-200a, miR-214 and miR-322 novel therapeutic tool for HCC patients with HBV
were downregulated in alcohol-related HCC.51,52 The infection.
observed reduction in miR-27 in alcoholic steato- In addition, miR-196 plays an important role through
hepatitis was the result of epigenetic events that the inhibition of Bach1 (a basic leucine zipper mamma-
occurred in response to alcohol.53 lian transcriptional repressor) and upregulation of
The development and exacerbation of NASH, both hemeoxygenase 1 in HCV-related HCC.60 Diaz et al. also
of which are also associated with miRNA, increase demonstrated 18 miRNA among 2226 human miRNA
the risk of HCC. A recent study indicated that miRNA that were exclusively expressed in HCV-related HCC.61
play a critical role in activating hepatic stellate cells One of these 18 miRNA has been associated with net-
(HSC) during the development of NASH.54 Free works that include p53, PTEN and retinoic acid and is
cholesterol was observed to accumulate due to an involved in the pathogenesis of HCC.62,63 These data
enhancement of both sterol regulatory element- suggest that miRNA pathways are essential to the devel-
binding protein-2 (SREBP2) and miR-33a signaling via opment of HCC during HCV infection.
the inhibition of peroxisome proliferator-activated
receptor- signaling together with HSC activation
and disruption of the SREBP2-mediated cholesterol- CLINICAL SIGNIFICANCE OF MIRNA IN HCC
feedback system in HSC.54 The upregulation of miR-21, Single nucleotide polymorphisms of miRNA
which downregulates the expression of tumor sup- and the risk of HCC
pressor phosphatase and tensin homolog (PTEN), is
induced by unsaturated fatty acids in hepatocytes.46 In
addition, miR-155 suppresses another tumor suppres- S INGLE NUCLEOTIDE POLYMORPHISMS in
miRNA and their targets have been associated with
an increased risk of HCC. Because miRNA must closely
sor gene, CCAAT-enhancer-binding protein-, and has
been also shown to be upregulated in mice fed a recognize binding sites in their target genes, a variation
choline-deficient amino acid-defined diet.47,48 in even 1 nt may produce dramatic changes in the
Viral hepatitis, such as that caused by the hepatitis B post-transcriptional regulation of target genes. Poly-
virus (HBV) and hepatitis C virus (HCV), is the most morphisms in miR-101-1/rs7536540,64 miR-101-2/
frequent cause of HCC and cirrhosis.55 The 5-year rs12375841,64 miR-34b/c/rs493872365 and miR-106b-
cumulative risk of hepatocarcinogenesis with liver cir- 25-cluster/rs99988566 are positively associated with an
rhosis ranges 530%.55 Among HBV cases, only two increased risk of HCC. In contrast, miR-371373/
miRNA, miR-210 and miR-199-3p, were observed to rs385950167 and miR-149c/rs229283268 are negatively
affect HBV gene expression and replication in an involved in HCC risk. However, conflicting results were
experimental model. In contrast, many cellular miRNA obtained from several studies, such as with miR-499a/
indirectly regulate the HBV life cycle by affecting virus- rs37464446870 and miR-196a-2/rs11614913.68,7173
relevant cellular proteins.56 Ura et al. examined the
expression of 188 miRNA in HCC and adjacent normal miRNA as biomarkers for HCC
tissues obtained from 12 HBV positive and 14 HCV miRNA can be characterized as prognostic or diagnostic
positive patients. In these groups, the expression of six markers. Downregulation of the miRNA miR-let-7g,74
miRNA was decreased in HBV patients, and that of 13 miR-22,75 miR-26,58 miR-29,76 miR-99a,77 miR-122,78

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132 A. Morishita and T. Masaki Hepatology Research 2015; 45: 128141

Table 1 Downregulated miRNA in hepatocellular carcinoma


miRNA Targets Mechanisms References
50,83,84
let-7a Caspase-3, STAT3 Apoptosis, proliferation
85
let-7b HMGA2 Apoptosis, proliferation
51,86,87
let-7c Bcl-xL, c-Myc Apoptosis, proliferation, cell growth
50
let-7d Apoptosis, proliferation
50
let-7f-1 Apoptosis, proliferation
74,88,89
let-7g Bcl-xL, c-Myc, COLIA2, p16 Apoptosis, metastasis
90
miR-1 ET-1 Proliferation
91
miR-7 PIK3CD
92
miR-10a EphA4
93
miR-10b
94
miR-15a/16
52
miR-21
9597
miR-26a CDK6, IL-6, cyclin D2, E1, E2 Cell cycle
98
miR-29a SPARC Proliferation
99
miR-29b MMP-2 Invasion
100
miR-29c SIRT1
101,102
miR-34a c-Met, CCL22 Metastasis
77,103
miR-99a PLK1, IGF-1R
103
miR-100 PLK1 Carcinogenesis
104106
miR-101 EZH2, EED, Mcl-1, Fos, Apoptosis, DNA methylation
miR-122 Bcl-w, ADAM17, Wnt1 Apoptosis, proliferation, angiogenesis 107110

111
miR-124 PIK3CA Proliferation
112,113
miR-125a MMP11, VEGF-A,SIRT7 Proliferation, metastasis, metabolism
51,113117
miR-125b Mcl-1, Bcl-w, SUV39H1, SIRT7 Proliferation, metastasis, angiogenesis, apoptosis,
histone modification
51,118,119
miR-139 ROCK2, c-Fos Metastasis
51
miR-139-5p
120,121
miR-140-5p TGFR1, FIF9, DMMT1
122
miR-141 DLC-1
miR-145 IRS1/2, IGF-1R, -catenin 81,123

124127
miR-148a c-Met, HRIP, E-cadherin, c-Myc
128
miR-152 DNMT1, GSTP1, CDH1
129,130
miR-195 cyclin D1, CDK6, E2F3, LATS2 Cell cycle, tumorigenesis, apoptosis
17
miR-198
131133
miR-199a-3p mTOR, PAK4, caveolin-2 Drug resistance, cell growth
134,135
miR-199a-5p DDR1, ATG7 Invasion, autophagy
136
miR-199b Proliferation, invasion, apoptosis
137
miR-200a HDAC4 Proliferation, metastasis
51
miR-200b
52
miR-200c
138
miR-203 Surviving Proliferation
miR-214 HDGF, -catenin Cell growth, angiogenesis, metastasis 139141

142
miR-219-5p GPC3 Proliferation
52
miR-222
16
miR-223 STMN1 Proliferation
143
miR-224
127
miR-363-3p c-Myc
144,145
miR-375 ATG7, AEG-1 Autophagy
146
miR-376a PIK3R1 Apoptosis, proliferation
147
miR-429 Rab18
148
miR-449 c-Met Proliferation, apoptosis
149
miR-450a DNMT3a Proliferation
150,151
miR-520b/e NIK, MEKK2, cyclin D1 Cell growth, proliferation
152
miR-612 AKT2
153
miR-637 STAT activation
93
miR-1271 GLP3

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Hepatology Research 2015; 45: 128141 A. Morishita and T. Masaki 133

miR-124,79 miR-139,80 miR-14581 and miR-199b82 classified HCC into three main clusters.189 These results
has been implicated in cell proliferation, apoptosis, indicate the potential value of miRNA detection for the
angiogenesis, recurrence, shorter disease-free survival prediction of survival in HCC. Furthermore, Yamamoto
and poor prognosis (Table 1). In contrast, upregulation et al. reported that miR-500 was increased in the sera of
of miR-10b,154 miR-17-5p,155 miR-21,156 miR-135a,157 HCC patients and decreased after surgical treatment.196
miR-155,158 miR-182,159 miR-221156 and miR-222118,156 In addition, other miRNA, such as miR-25, miR-375 and
has been associated with metastasis, angiogenesis and let-7f, can be used to distinguish HCC from normal
poor prognosis (Table 2). In addition, miRNA profiling control tissue.197 Interestingly, extracellular miRNA are

Table 2 Upregulated miRNA in hepatocellular carcinoma


miRNA Targets Mechanisms References
92,154
miR-10a EphA4; CADM1 EMT, metastasis
160
miR-17-5p p38 pathway Migration
49
miR-18a ER1a Proliferation
12,48
miR-21 PTEN; RHOB; PDCD4 Metastasis, drug resistance
161
miR-22 Era, IL-1a Carcinogenesis
162
miR-23a PGC-1a, G6PC Gluconeogenesis
96,97
miR-26a IL-6, CyclinD2, E2 Tumor growth, metastasis
163
miR-30d GNAI2 Invasion, metastasis
17
miR-100 PLK1 Carcinogenesis
164
miR-106b APC Proliferation
165
miR-130b TP53INP1 Cell growth, self-renewal
157
miR-135a FOXM1, MTSS1 Metastasis
166
miR-143 FNDC3B Metastasis
167,168
miR-151 FAK, RhoGDIA Migration
48,169,170
miR-155 SOCS1, DKK1, APC, PTEN Proliferation; tumorigenesis
171
miR-181b TIMP3 Tumorigenesis, metastasis
159
miR-182 MTSS1 Metastasis
172
miR-183 AKAP12 Carcinogenesis
172
miR-186 AKAP12 Carcinogenesis
173
miR-200 NRF2 pathway Carcinogenesis
174
miR-210 VMP1 Metastasis
175
miR-216a TSLC1 Carcinogenesis
176
miR-216a/217 PTEN, SMAD7 EMT, drug resistance
177179
miR-221 p27, p57, Arnt, CDK inhibitors Apoptosis, proliferation, angiogenesis
180
miR-221/222 p27, DDIT4 Tumorigenesis
181,182
miR-224 Atg5, Smad4, autophagy, API-5 Tumorigenesis, autophagy
183
miR-301a Gax Metastasis
184
miR-373 PPP6C Cell cycle
185
miR-423 p21/waf1 Cell growth
186
miR-485-3p MAT1, LIN28B Cell growth, EMT
187
miR-490-3p ERCIC3 EMT
188
miR-494 MCC Tumorigenesis
186
miR-495 MAT1, LIN28B Tumorigenesis, metastasis
189
miR-517a Tumorigenesis, metastasis
190
miR-519d p21, PTEN, AKT3, TIMP2 Proliferation, invasion, apoptosis
191
miR-550a CPEB4 Proliferation, invasion, metastasis
192
miR-590-5p TGF- RII Metastasis, proliferation
193
miR-615-5p IGF-II Proliferation, migration
194
miR-657 TLE1, NF-B Proliferation
186
miR-664 MAT1, LIN28B Tumorigenesis, metastasis
195
miR-1323 Proliferation

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130 A. Morishita and T. Masaki Hepatology Research 2015; 45: 128141

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