You are on page 1of 7

JOURNAL of BIOTECHNOLOGY RESEARCH in TROPICAL REGION, Vol. 1, Oct.

2008 (Special Edition) ISSN: 1979-9756

Construction of a CSF3-Synthetic Gene for Recombinant


Human G-CSF Expression in Yeast Using a TBIO
(Thermodynamically Balanced Inside-Out) Method

Asrul Muhammad Fuad1*, Dian Fitria Agustiyanti1, Yuliawati1, Citra Fidyani1,


Aminah1, Adi Santoso1

1
Bioprocess Engineering Laboratory, Bioprocess Division, Research Center for Biotechnology,
LIPI. Cibinong Science Center-Jalan Raya Bogor Km. 46, Cibinong 16911-Bogor

Abstract A DNA sequence of 558bp long has been con-


Human Granulocyte-colony stimulating factor (hG- structed using 14 oligonucleotides with an average
CSF or G-CSF) is a cytokine, which has therapeutic length of 60 nucleotides. The synthetic gene se-
applications. It is a hematopoietic growth factor that quence and oligonucleotides used had been de-
stimulates proliferation of granulocytic cells called signed to contain yeast’s codon preferences with the
granulopoiesis. It is used to increase neutrophilic DNAWorks3.1 program. It was cloned in a commer-
granulocytes or neutrophils level in the body. Neu- cial cloning vector and is undergoing DNA sequence
trophils compose the majority of white blood cell analyses.
(WBC) components and play very important roles in Keywords: recombinant hG-CSF, CSF3, neutrope-
human defense against infections. Neutropenia is nia, neutrophils, granulopoiesis, synthetic gene,
an abnormal condition where there is very low num- TBIO, Pichia pastoris.
ber of WBCs in human body due to various causes
such as drug side-effects, vitamin B12 defi-ciency,
cancer chemotheraphy, virus infections and bone INTRODUCTION
marrow cells abnormality. Nowdays, neutronnpenia
could be avoided by the administration of recombi-
G-CSF (granulocyte-colony stimulating factor) is
nant hG-CSF preparation. G-CSF is a monomer
protein encoded by a single gene called CSF3. a haematopoietic growth factor that works by en-
There are two variants of G-CSF found in the body. couraging the bone marrow to produce more white
However, both variants (177aa and 174aa) show blood cells. Growth factors are special proteins pro-
similar bioactivity. Recombinant hG-CSF has been duced naturally in the body. They can also be made
used widely in combination with various anticancer as drugs. One of the main side effects of chemothe-
drugs to fight cancers. It was used to avoid neutro- rapy drugs is the reduction in the number of white
penia and complication during and after chemothe- blood cells. This makes our body less able to fight
rapy. This research had a goal to produce recombi- infection. There is a risk that one could develop a
nant(s) hG-CSF and its analogs (muteins) with im- serious infection, which might have to be treated in
proved characteristic(s) using synthetic gene(s) that
hospital. If the number of blood cells (blood count)
code for this protein. The recombinant protein will be
expressed in a defined yeast expression system. To
is low when the next dose of chemotherapy is due,
achieve this goal, we firstly had to construct a then the chemotherapy may have to be postponed or
CSF3-synthetic gene containing optimized codon for the dose lowered.
expression in Pichia pastoris. At present, we suc- In this situation, G-CSF can be given to stimulate
cessfully constructed a version of CSF3-synthetic the bone marrow to produce new white cells more
gene using a PCR-based technique called the TBIO quickly after chemotherapy. This can shorten the
(Thermodynamically Balanced Inside-Out) method. period during which the patient is at risk of develop-
ing a serious infection. G-CSF is not needed with all
types of chemotherapy treatment, as the white blood
cell count can often recover on its own. G-CSF may
sometimes be used before high-dose chemotherapy
to make the bone marrow produce more stem cells.
*Correspondence to: Dr. Asrul Muhammad Fuad These extra stem cells can then be collected and
Tel: +62 21 8754587; Fax: +62 21 8754588 given back to you after high-dose chemotherapy
e-mail: asrul.fuad@yahoo.co.id treatment. The stem cells then go back into the bone
marrow and produce blood cells.

Construction of a CSF3-Synthetic Gene for Recombinant Human G-CSF Expression in Yeast Using a TBIO
(Thermodynamically Balanced Inside-Out) Method 1
JOURNAL of BIOTECHNOLOGY RESEARCH in TROPICAL REGION, Vol. 1, Oct. 2008 (Special Edition) ISSN: 1979-9756

Human G-CSF was coded from a single gene length. Each of which was constructed with the
called CSF3. It was mapped on the chromosome 17. TBIO method.
There are two isoforms of mature protein G-CSF The purpose of this study was to synthesize a
mostly found in the body, which are 177 aa yeast-codon-optimized CSF3 gene which might be
(NP_000750) and 174 aa (NP_757373) in lengths. expressed extracellularly from a methylotrophic
Both isoforms show similar bioactivities. There are yeast Pichia pastoris. An mRNA variant of human
three different types of G-CSF commercially availa- CSF3 gene (variant-2) producing the hG-CSF mole-
ble; lenograstim (Granocyte®), filgrastim (Neupo- cule isoform-b, was altered to obtain a CSF3 syn-
gen®) and pegylated filgrastim (Neulasta®). These thetic gene with optimized-codon preference for
drugs work in a similar way. The molecules of the protein expression in P. pastoris. In this research,
pegylated filgrastim have more glycosylation that we constructed a DNA sequence or an ORF (Open
helps the drug to work longer. Reading Frame) of hG-CSF gene, called CSF3, with
Chemical synthesis of DNA sequences provides the TBIO method. The method was slightly mod-
a powerful tool for creating, modifying and studying ified in which the PCR reactions was run sequential-
gene function; such as studying its structure and ly with a given primer pair from the middle of the
expression in a given host cell. In the past, the most gene. The PCR product was then used as template
direct method to construct a synthetic gene were to for sequence elongation with the next primer pair of
mix overlapping preformed double stranded DNA the outside part of the sequence being generated.
and ligate them each other enzymatically. However, The amino acid sequence of the hG-CSF iso-
the yield of the full-length product declines sharply form-b (NP757373) was used as template for gener-
with increasing number of DNA duplexes. The more ation of the synthetic gene sequence. The signal
common method is to construct separate DNA seg- peptide (first 30 amino acid) was excluded from the
ments of the gene from a smaller number of DNA sequence, resulting in a protein sequence of 174 aa
duplex, amplify each fragment by sub-cloning into a in length.
plasmid vector then ligate the fragments to give the
full-length gene. Although, this method could effi-
ciently produce the intermediate product for each MATERIALS AND METHODS
step, the intermittent sub-cloning and bacterial am-
plification steps make the procedure very tedious Materials: The oligonucleotide primers were syn-
and time-consuming. The more recent method in- thesized by Generay Biotech. The high fidelity Pfu
volves assembling of several synthetic primers or DNA polymerase and dNTPs mix were purchased
oligonucleotides to produce up to 500 bp DNA se- from Fermentas. Cloning plasmid InstanCloneTM
quence, assembled in a single-tube annealing and was purchased from Fermentas. Plasmid DNA gel
ligation reactions. extraction kit was from RBC. The XhoI and SalI
In this study, we applied a method for a synthet- restriction enzymes were from Fermentas. T4 DNA
ic gene construction called the TBIO (Thermody- ligase was from Fermentas.
namically Balanced Inside-Out) method. This me-
thod, originally reported by Gao et al. (2003), offers CSF3 Open Reading Frame (ORF) and primer
a very efficient method for gene construction with- design: The CSF3 Open Reading Frame (ORF) was
out the use of restriction and ligation procedures. generated based on the protein sequence of the iso-
This method is a PCR-based single-step DNA syn- form-b of hG-CSF molecule having 174 amino acid
thesis uses both primers in sense and anti-sense residues. The protein sequence was retrieved from
strands each for half of the gene length. The primer the gene database (GenBank accession no.
elongation will run on both directions. Thus, TBIO NP_757373) or the protein database (SwissProt ac-
bidirectional elongation must be completed for a cession no. P09919-2). The synthetic gene excludes
given outside primer pair before the next round of the first 30 aa native signal peptide. The DNA frag-
bidirectional elongation can take place. The method ment of the synthesized CSF3 ORF was 522 bp in
was reported to be successfully used in constructing length. However, in the design of the CSF3 ORF,
some DNA sequences of up to 1712 bp in length. two restriction sequences (XhoI and SalI) were add-
The same method was used to generate longer DNA ed at both ends of the synthetic gene as well as a
sequences in a slightly modified method (Xiong et linker peptide (KREAEA) at the 5‟ end. The result-
al., 2004). The method was reported to give high- ing ORF sequence was 558 bp in length. The protein
fidelity and cost-effective PCR-based two-step sequence was submitted to a software program,
DNA synthesis for construction of long segments of DNAWorks 3.1, by which the oligonucleotide se-
DNA. The long DNA sequence (2,382 bp) was dis- quence (ORF) of the synthetic gene was then gener-
sected into five DNA segments of around 500 bp in ated. The gene was optimized to contain P. pastoris
codon preference. Some parameters was set up for

Fuad, et.al. 2
JOURNAL of BIOTECHNOLOGY RESEARCH in TROPICAL REGION, Vol. 1, Oct. 2008 (Special Edition) ISSN: 1979-9756

the required oligonucleotide synthesis, including pTZ57R/T (Fermentas). The recombinant plasmid
primer length (set at 60 nt), annealing temperature was transformed into E. coli XL1-Blue. The recom-
(set at 60oC), codon frequency threshold (set at binant clones were then selected on selection LB-
10%) and the output mode was set to TBIO method agar medium containing IPTG and X-gal. Positive
(thermodynamically balanced inside-out). The pro- clones (white colonies) were selected, cultured in an
gram sent a detail output of the DNA sequence as appropriate media and the recombinant plasmids
well as primer sequences required for construction were extracted and analyzed. Enzymatic restriction
of the synthetic gene. There were 14 primers or oli- analysis was then carried out to analyze the recom-
gonucleotides which should be synthesized, each binant plasmids using single and double-digestion
having 60 nt (nucleotides) in average and an overlap analysis (with XhoI and SalI). Cloning and trans-
region varied from 18 to 25 nt between adjacent formation into the cloning plasmid kit were carried
primers. out according to protocols given by the producer.
Plasmid preparation and restriction analysis were
CSF3 Open Reading Frame construction and ex- done using the general protocols for molecular clon-
perimental design: The synthetic gene was con- ing according to Ausubel et al. (2002). The recom-
structed according to a modified TBIO method (Gao binant plasmid(s) harboring the correct DNA insert
et al., 2003). The PCR-based primer extention me- was then submitted for DNA sequence analysis us-
thod of the synthetic gene, which is the basic prin- ing appropriate primers.
ciple of the TBIO method, was started from the
middle of the gene sequence. As shown in Fig. 1,
the 3‟-terminal ends of the first pair of 60 mer RESULTS AND DISCUSSION
sense- and antisense-strand TBIO primers (P7 and
P8) overlap in the middle of the synthetic gene se- CSF3 Open Reading Frame (ORF) and primer
quence. The gene synthesis started at this point by design: Human G-CSF is encoded by a single gene
primer extension process. The PCR reaction was called CSF3 belongs to IL-6 superfamily. The gene
continued with the next 60 mer pair of outer primers is located in chromosome-17 and mapped at locus
(P6 and P9), both from sense- and antisense-strands. 17q11.2-q21 by in situ hybridization (Tweardy et
The reaction was repeated with the next pair of pri- al., 1987). The gene produces 3 variants of mRNA
mers. Those pairs of primers were added sequential- that resulted in 3 different types of preprotein hG-
ly to extend the sequence polymerization in both CSF. However, there are two isoforms of mature
directions of sense and antisense strands. The PCR hG-CSF mostly found in the body; isoform-a (177
mix reaction uses 40 nM of each primer pairs, 0.2 aa, GenBank accession no. NP-000750) and iso-
mM dNTPs, 1x Pfu buffer and 1.25 U of Pfu DNA form-b (174 aa, GenBank accession no. NP-
polymerase in a 50 µl PCR mix reaction volume. 757373). Although isoform-b lacks three amino ac-
For the subsequent PCR reaction, 2.5 µl of the inner ids VSE at position 66-68, both isoforms show simi-
DNA sequence was added (as template) into the lar bioactivity.
next PCR reaction with the next pair of primer for In this study, the protein sequence of the short ver-
DNA sequence elongation. The PCR cycles used sion of hG-CSF (isoform-b) was used as template to
was 2 min for first denaturation at 95oC, for 1 min generate the synthetic CSF3 gene sequence
of denaturation at 95oC, for 30 sec of annealing at (CSF3syn). The human CSF3 gene that codes for
59oC, for 1 min of elongation at 72oC and 5 min for hG-CSF was codon-optimized for expression in
final elongation at 72oC. The PCR reaction was set yeast. However, the first 30 aa native peptide signal
for 25 cycles. was excluded in the synthetic gene design. Instead, a
linker peptide KREAEA was added at the N-
Cloning and analysis of the synthetic gene: The terminal of the sequence. The linker peptide
PCR products of each sequential PCR reactions presents proteolytic cleavage site(s) that will be use-
were analyzed in a 1.5% agarose gel electrophoresis. ful for secretion of the recombinant protein in yeast
The final length of the synthetic DNA sequence be- P. pastoris since the protein target will be fused
ing constructed is 558 bp. Into this PCR product, an with a yeast-derived signal sequence factor- . Table
amount of 1 to 2 U of Taq DNA polymerase (Fer- 1 shows the hG-CSF protein sequence (isoform-b)
mentas) was added and the mixture was incubated at with the peptide linker. The sequence was used as
72oC for at least 30 min. This process was carried input and submitted into the DNA Works 3.1 pro-
out in order to add an additional “A” (adenine) at gram (online) to generate the DNA sequence
the 3‟-end of each double stranded synthetic DNA needed. The synthetic gene was designed to contain
sequence which has been produced. The DNA prod- optimized codon preferences for expression in yeast
uct was then sub-cloned into a commercial A/T P. pastoris. The ORF of the synthetic gene generat-
cloning plasmid kit such as InstanCloneTM ed by the program is shown in Table 2.
Construction of a CSF3-Synthetic Gene for Recombinant Human G-CSF Expression in Yeast Using a TBIO
(Thermodynamically Balanced Inside-Out) Method 3
JOURNAL of BIOTECHNOLOGY RESEARCH in TROPICAL REGION, Vol. 1, Oct. 2008 (Special Edition) ISSN: 1979-9756

Two restriction sites, XhoI and SalI, were added at poly-His Tag at the C-terminal. However, the stop
both ends of the sequence for cloning purpose in the codon will be included for the construction of other
yeast expression vector. The stop codon was ex- version of gene without Tag. The resulting ORF
cluded since the sequence would be fused with a sequence was 558 bp in length.

Table 1. Polypeptide sequence of CSF3 (or hG-CSF) used as input for the synthetic gene
design using the DNA Works 3.1 program.

Polipeptide sequence
1 KREAEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSL
61 GIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFA
121 TTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEVSYRVLRHLAQP
181

Note: The KREAEA sequence is a peptide linker between signal sequence Factor-α and
the synthetic gene

Table 2. DNA sequence of the CSF3 synthetic gene as output from DNAWorks 3.1.

DNA sequence
1 AAGAGAGAGGCTGAAGCTACTCCACTAGGCCCAGCTTCTTCTTTGCCACAATCTTTTCTT
61 TTGAAGTGTTTGGAACAAGTTAGAAAGATTCAGGGTGATGGTGCTGCCTTGCAGGAAAAG
121 TTGTGTGCTACTTACAAGCTGTGTCATCCAGAAGAATTGGTCTTGCTGGGACATTCTTTG
181 GGTATTCCATGGGCTCCATTGTCTTCTTGTCCATCTCAAGCTCTGCAATTGGCTGGTTGT
241 TTGTCTCAGTTGCATTCTGGTTTGTTTCTGTACCAAGGATTGTTGCAAGCTTTGGAAGGT
301 ATTTCTCCAGAGTTGGGACCAACTTTGGATACTTTGCAACTTGATGTTGCTGATTTTGCT
361 ACTACTATTTGGCAACAAATGGAAGAACTAGGTATGGCTCCTGCTTTGCAGCCAACTCAA
421 GGTGCTATGCCAGCCTTTGCATCAGCTTTTCAGAGAAGAGCTGGTGGTGTTTTGGTTGCT
481 TCTCATTTGCAGTCTTTCCTAGAAGTTTCTTACAGAGTTTTGAGACATTTGGCTCAACCA
541

CSF3 Open Reading Frame construction with have been optimized to have equal Tm value (an-
TBIO method: The DNA Works 3.1 program also nealing temperature), which is 60±1oC.
generated 14 oligonucleotides or primers for the The TBIO-designed primer set was used for the
gene construction in addition to generating the syn- gene synthesis by a PCR-based method. The gene
thetic gene sequence. Those primers have an aver- was synthesized by seven-step sequential „inside-
age length of 60 nt (nucleotides). As seen in Fig. 1, out‟ bidirectional elongation reactions from the
half of them have the sense-strand sequences and middle to both ends, which are the N- and C-termini
the other half have the antisense-strand sequences of the synthetic gene sequence. A pair of TBIO pri-
(Primer sequences not shown). Between the adja- mers was used in each elongation. This method effi-
cent primers, there are overlap regions between 18 ciently produced the desired DNA product, which
and 25 nt in length. However, the overlap regions was the ORF of the synthetic gene as shown in Fig.
2.

Fuad, et.al. 4
JOURNAL of BIOTECHNOLOGY RESEARCH in TROPICAL REGION, Vol. 1, Oct. 2008 (Special Edition) ISSN: 1979-9756

p1
p2
p3
p4
p5
p6
p7

p8
p9
p10
p11
p12
p13
p14

Forward primer
Reverse primer

Fig. 1. Construction method of CSF3 synthetic gene using the TBIO (thermodynamical-
ly balanced inside-out) method. Primer extension was started from the middle part of
the gene, followed by exterior primer pairs. The process was carried out by sequential
PCR with each pair of primers. Half of the primers have the sense strand sequence,
whereas the other half have the anti-sense strand sequence.

(bp) 1 2 3 4 5 6 7 8 range. The program used to generate the synthetic


gene sequence, the DNA Works 3.1, has a range of
parameters that could be fixed or customized. For
1000
example, when the primer length was set at a fix
value for 60 nt and the Tm range varies from 60 to
65oC, then the program sorted out a number 6 dif-
600 ferent sequences appropriate for each Tm value.
500 Then one sequence that showed the best Tm range
of 1.3oC was chosen, which was the sequence with
400 the Tm setting at 60oC. This means that the gap or
difference of annealing temperatures of each adja-
300
cent primers were not greater than that value
200 (60±1.3oC). The less the Tm ranges the better elon-
gation process in the PCR reactions.
The PCR product showed that the sequential
100
PCR reactions carried out according to this method
worked well (Fig. 2). However, when all of primers
were used in a single PCR mixture and was run in a
Fig. 2. DNA Analysis of PCR products for the CSF3 syn- single-step PCR, no product was resulted (data not
thetic gene construction using the TBIO method. DNA shown). The primer length of 60 nt was chosen for
ladder 100pb (lane-1) and PCR products (lane-2 to 8): effective result and cost considerations. Xiong et al.
P7~P8 (lane-2); P6~P9 (lane-3); P5~P10 (lane-4);
P4~P11 (lane-5); P3~P12 (lane-6); P2~P13 (lane-7); (2004) has successfully constructed a quiet long
P1~P14 (lane-8). The synthetic gene final product was gene sequence called vip3aI (2,382 bp). He reported
558 bp in length (lane-8). the effective cost that should be spent with 60 nt
primer was better than 90 nt primer for the vip3aI
The TBIO-designed primer characteristics were gene synthesis. The cost was reduced to one third
shown in Table 3 (A-D), including frequency range, using 60 nt primers compared to 90 nt primers.
Tm range, overlap length range and primer length

Construction of a CSF3-Synthetic Gene for Recombinant Human G-CSF Expression in Yeast Using a TBIO
(Thermodynamically Balanced Inside-Out) Method 5
JOURNAL of BIOTECHNOLOGY RESEARCH in TROPICAL REGION, Vol. 1, Oct. 2008 (Special Edition) ISSN: 1979-9756

Table 3. Some characteristics of the oligonucleotides used for the synthesis of the CSF3 synthetic gene. (A) Codon fre-
quency range; (B) Annealing temperature range (Tm); (C) Overlap region range; (D) Oligos length.

A B C D
Frequency No. of Tm range No. of Overlap No. of oligos Length range No. of
range (%) codons (oC) overlaps length range oligos
(nt)
0-4 0 < 58 0 < 17 0 < 49 2
5-9 0 58 0 17 0 49-50 0
10-14 4 59 5 18 3 51-52 0
15-19 7 60 8 19 2 53-54 0
20-24 2 61 0 20 3 55-56 0
25-29 15 62 0 21 0 57-58 0
30-34 27 63 0 22 3 59-60 12
35-39 14 64 0 23 1 CSF3 61-62 0
40-44 30 65 0 24 0 63-64 0
45-49 25 66 0 25 1 65-66 0
50 56 26 0 67-68 0
27 0 69 0

Cloning and analysis of the synthetic gene: The hangs were added at both ends by incubating the
PCR-based gene synthesis with TBIO method re- synthetic gene product with Taq DNA polymerase
sulted in a final product of the target gene having (at 72oC, for 1 h) prior to ligation process into the
558 bp in length. Each step of the sequential PCR cloning plasmid (pTZ57R/T).
reactions produced a set of DNA products with in- Transformation of the ligation product has success-
cremental length, ranging from around 100 to 558 fully produced E. coli (strain XL-1 Blue) transfor-
bp of the final product (Fig. 2). During all amplifi- mants which harbor the recombinant plasmid con-
cation processes, Pfu DNA polymerase was used to taining the putative synthetic gene sequence. Re-
ensure the accuracy of the amplified DNA sequence striction analysis (with XhoI and SalI) was done to
from its primers. However, the Pfu DNA polyme- some positive clones obtained and some of them
rase would produce a „blunt end‟ product only. In have shown the correct DNA insert (Figs. 3 and 4).
view of cloning the synthetic gene product into an
„A/T‟ cloning vector, to the DNA product „A‟ over-

1 2 3 4 5 6 7

1 2 3 4 5 6 7 8 9 10 11 12 13

3000
2000
1500
1000 CSF3syn
750
500
250

Fig. 3. Recombinant plasmid miniprep which contains Fig. 4. Restriction analysis of recombinant plasmid
the CSF3 synthetic gene. Lane-1: plasmid w/o DNA in- TZ57R-CSF3syn with XhoI and SalI restriction enzymes.
sert (Control); lane 2-12: different clones of recombinant
plasmids.

Fuad, et.al. 6
JOURNAL of BIOTECHNOLOGY RESEARCH in TROPICAL REGION, Vol. 1, Oct. 2008 (Special Edition) ISSN: 1979-9756

In conclusion, the DNA Works 3.1 program has ACKNOWLEDGEMENT


enabled everyone to design any DNA sequence or
gene of interest in a flexible manner by combining This research is supported by The Indonesian In-
methods (TBIO or TBC) and sequence optimization stitute of Sciences (LIPI)‟s Competitive Research
for a synthetic gene construction. Availability of a Program 2008, sub-program the Post Genomic Mo-
codon usage database referred by this program lecular Farming.
might enhance the quality of the DNA sequence
output resulted from this program.
However, regardless of whether codon-optimized REFERENCES
sequences improve the yield of the protein of inter-
est, the TBIO method of PCR-based gene synthesis Ausubel, F.M., R. Brent, R.E. Kingston, D.D. Moore, J.G.
provides a forceful alternative approach for engi- Seidman, J.A. Smith & K. Struhl (Ed.). 2002. Short Proto-
neering DNA sequences for many other uses such as cols in Molecular Biology. 5th ed. John Wiley and Sons,
Inc. USA.
construction of : (1) predicted genes/ cDNA that are
difficult to clone or the corresponding mRNA Gao, X., P. Yo, A. Keith, T.J. Ragan & T.K. Harris. 2003.
sources are difficult to obtain; (2) alternatively Thermodynamically Balanced Inside-Out (TBIO) PCR-
Based Gene Synthesis : a Novel Method of Primer Design
spliced gene variants; (3) newly designed prokaryo- for High-Fidelity Assembly of Longer Gene Sequences.
tic plasmids that can be used to create new strain of Nuc. Acids Res. 31 (22): e143.
microbes and (4) newly designed eukaryotic vectors
Http://www.ncbi.nlm.nih.gov/. Colony Stimulating Factor 3
that can be used for transgenic studies, gene therapy (CSF3) Isoform a Precursor (Homo sapiens). Accession No.
and DNA vaccines. NP_000750.
DNA sequencing of the CSF3 synthetic gene Http://www.ncbi.nlm.nih.gov/. Colony Stimulating Factor 3
(CSF3syn) for the sequence analysis is still in (CSF3) Isoform b Precursor (Homo sapiens). Accession No.
progress. However, restriction analysis has shown NP_757373.
that the target gene having a correct length of Tweardy, D. J., L.A. Cannizzaro, A.P. Palumbo, S. Shane, K.
around 558 bp has been successfully synthesized. Huebner, P. Vantuinen, D.H. Ledbetter, J.B. Finan, P.C.
The chance of obtaining a fully correct gene se- Nowell & G. Rovera. 1987. Molecular Cloning and Charac-
quence seems to be high, since the high fidelity Pfu terization of a cDNA for Human Granulocyte Colony-
Stimulating Factor (G-CSF) from a Glioblastoma Multi-
DNA polymerase is used during the gene construc- forme Cell Line and Localization of the G-CSF Gene to
tion. Although there is also possibility to have some Chromosome Band 17q21. Oncogene Res. 1: 209-220.
mutated sequences, usually point mutation such as
Xiong A.S., Q.H. Yao, R.H. Peng, X. Li, H.Q. Fan, Z.M. Cheng
deletion or substitution, it is less expected. & Y. Li. 2004. A Simple, Rapid, High Fidelity and Cost Ef-
fective PCR-Based Two-Step DNA Synthesis Method for
Long Gene Sequences. Nuc. Acids Res. 32 (12): e98 (Pub-
lished online July 7, 2004).

Construction of a CSF3-Synthetic Gene for Recombinant Human G-CSF Expression in Yeast Using a TBIO
(Thermodynamically Balanced Inside-Out) Method 7

You might also like