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focus on EVO–DEVO

Perspectives
different body plans9. The programme
opinion
concentrates on the evolution of genetic
toolkits and the regulatory logic that under-
Evo–devo: extending the lies organismal development; for example,
the evolution of the homeotic genes through
evolutionary synthesis mutation, duplication and divergence. The
hierarchies of gene regulatory networks and
signalling pathways that regulate cell and
Gerd B. Müller tissue interactions are equally central10,11.
Mapping their expression patterns and their
Abstract | Evolutionary developmental biology (evo–devo) explores the correlation with characteristic construc-
mechanistic relationships between the processes of individual development tional features of body architecture yields
and phenotypic change during evolution. Although evo–devo is widely information on their possible roles in
acknowledged to be revolutionizing our understanding of how the development phenotypic evolution12.
of organisms has evolved, its substantial implications for the theoretical basis of
The experimental epigenetic programme.
evolution are often overlooked. This essay identifies major theoretical themes
This programme examines how the dynam-
of current evo–devo research and highlights how its results take evolutionary ics of molecular, cell and tissue interactions
theory beyond the boundaries of the Modern Synthesis. affect evolutionary change. It looks at
properties of development that are not
Evolutionary developmental biology The comparative embryology and morphol- directly genetically determined, such as
(evo–devo) emerged as a distinct field of ogy programme. This approach studies self-organization or geometric and physical
research in the early 1980s to address the the morphogenetic differences that dis- factors. Perturbations of cell number, cell
profound neglect of development in the tinguish primitive and derived ontogenies. cycle, developmental timing or inductive
standard modern synthesis framework of Information from extant species is increas- interactions have been shown to produce
evolutionary theory, a deficiency that had ingly combined with contributions from phenocopies of derived or ancestral character
caused difficulties in explaining the origins palaeontology, including fossilized vertebrate states13, occasionally amounting to homeotic
of organismal form in mechanistic terms1,2. embryos and early stages of invertebrate transformations14. The epigenetic approach
Methodological advances such as techniques development3. Through its characterization also probes the influences of the environ-
for gene cloning and visualization of gene of the large-scale patterns of morphological ment on development, demonstrating that
activity in embryonic tissues facilitated the evolution, palaeontology provides evidence the same genotype can produce strikingly
emergence of the new field by allowing for significant changes in developmental different phenotypes in response to altered
the comparison of developmental processes pathways, for example, through heterochrony4, external conditions15–17.
of different taxa at the molecular level. and the details of anatomical variation
Today, evo–devo research is characterized over hundreds of millions of years can be The theoretical and computational pro-
by a dialectical approach that, on the one compared with the developmental patterns gramme. This approach concentrates on the
hand, looks at how developmental systems in extant species5. One recent approach has quantification, modelling and simulation
have evolved and, on the other hand, probes been to quantify ontogenetic shape transfor- of developmental evolution, and assists the
the consequences of these historically estab- mations6 and use phenotypic morphospace conceptual unification of evo–devo theory
lished systems for organismal evolution. concepts7 for the evolutionary interpretation in conjunction with experimental research.
A further question is how evolutionary of developmental data. Among its substantial tasks is relating
developmental interactions relate to envi- the precise timing and topology of gene
ronmental conditions (BOX 1). The pursuit The evolutionary developmental genetics activity to actual changes in cell and tissue
of these core questions utilizes various programme. This approach focuses on the behaviours. This has led to the development
conceptual and methodological approaches, evolution of the genetic machinery of devel- of computational tools for the three-
representing branches of research that can opment8. Rapid progress in the cloning of dimensional reconstruction and quantifica-
be called ‘programmes’. regulatory genes and new techniques of visu- tion of gene expression in developing
alizing gene expression in embryonic tissues embryos18–20, and the exploration of new
Multiple research programmes has made this the most productive area of mathematical methodologies for the
Over the past two decades, at least four empirical evo–devo today. Its foundational analysis of such data21. Multivariate analyses
major research programmes have formed achievement was the discovery of extensive extend the quantitative approach to ontoge-
in evo–devo, although there is extensive similarities in gene regulation among netic shape trajectories22. Such theoretical
overlap among them. distantly related species with fundamentally tools help to localize the ontogenetic

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components of phenotypic change, assist in circuitry of development have become alone, notably the dynamics of epigenetic
the organization of data and link evo–devo prevalent topics of empirical research. The interactions, the chemicophysical properties
with quantitative genetics and with the study study of point mutations27, transposable of growing cell and tissue masses, and the
of morphological integration23. elements28 and gene duplication29 in the influences of environmental parameters. As a
Quantitative developmental data are origin of cis-regulatory elements, as well as consequence, several overarching theoretical
also used for the biomorphic modelling of their variation30, changes in function31, and themes pertaining to the explanation of phe-
specific organ systems, such as tooth devel- population dynamics32, provides the founda- notypic organization have emerged. Whereas
opment (FIG. 1) or limb development24, so as tion for molecular models of organismal an early focus was on heterochrony37,38 and
to illustrate how changes in gene activity and evolution. Despite high conservation of gene developmental constraint39, the prominent
the self-organization of cells affect morpho- regulatory elements in anatomically diverse theoretical themes today are modularity,
genesis and the possibilities of phenotypic organisms, such as Hox gene activation in plasticity and innovation.
variation or innovation. Models help us vertebrates and arthropods9, there is exten-
to identify general properties of evolving sive variation in their activation patterns Modularity. Modular organization is perva-
developmental networks, suggesting, for among individuals, populations and species. sive at all levels of biological organization,
instance, an evolutionary tendency to Evolutionary modifications in the segmenta- from the genetic to the developmental, ana-
replace self-organizing ‘emergent’ networks tion and regional differentiation of major tomical and behavioural. Modules are gener-
with hierarchical networks25. This indicates body sections are associated with shifted Hox ally distinguished by their greater internal
that the genetically entrenched ontogenies of expression domains33,34, and changes in head (intramodule) than external (intermodule)
extant species, from which our knowledge and limb formation show similar shifts in integration, by their repetitiveness and by
of development is derived, constitute a Hox expression35,36. Given the correlations their evolutionary persistence and reuse.
stabilized and canalized condition, although between differences in phenotype with dif- The question raised by evo–devo scientists
greater flexibility and innovative potential ferences in gene activation, a major line of is whether certain forms of developmental
might have existed in primitive systems26. evo–devo concentrates on developing a the- modularity can be facilitators of adaptive or
The pluralism that is seen in today’s ory of evolving gene regulatory networks10. even non-adaptive evolution, and whether
evo–devo defies notions of a single research Further experimental proof will be necessary modularity represents a preferred mode of
programme. Rather, evo–devo explores a to determine the extent to which gene regula- phenotypic evolution, one that is favoured
multitude of topics at the development– tory change has a causal role in evolution. by natural selection40–42.
evolution interface using a plethora of Viewed at the level of the phenotype, One way to study modularity is by the
approaches and methods. At the same time, the evo–devo problem takes on a different analysis of ‘genotype–phenotype maps’43. If
relatively few common theoretical themes emphasis. Here the question is how certain the correspondence between genetic vari-
cut across programmes and capture the constructional motifs arise, how they become ation and phenotypic variation is modular,
consequences that evo–devo has for conserved and integrated into the body it can be decomposed into independent
evolutionary theory. architecture, and how they are reused over maps of smaller dimension. Those modules
and over again. Because phenotypic architec- that affect only a part of the phenotype can
Major theoretical themes ture is more robust than many of the suites react to selection independently, without
Evolution of the gene regulatory machin- of molecular and developmental interactions deleterious pleiotropic effects on other parts.
ery is commonly regarded as a primary that are involved in its formation (BOX 2), The evolution of modularity as an adaptive
creative force in morphological evolution12. the origin of phenotypic organization has principle, if confirmed, should enhance a
Consequently, the function and evolution become one of evo–devo’s most salient issues. population’s ability to generate heritable
of regulatory gene networks, signalling This focus necessarily includes many more phenotypic variation43.
pathways and other aspects of the molecular factors than the evolution of gene regulation A different way to approach the role of
modularity in evolution is through the study
of the mechanistic relationship between
developmental modules and units of phe-
Box 1 | Questions at the interface between evolution and development notypic construction. Subsets of anatomical
Evo–devo questions architecture can vary and adapt independ-
• How did development originate? Environment ently and, hence, qualify as modules. In the
• How did the developmental repertoire evolve? morphological tradition, such units have
Evo–devo been called homologues, characterized by
• How are developmental processes modified
Evolution Development their autonomy in body-plan organization44.
in evolution?
Devo–evo Because there is continuity in the phenotypic
Devo–evo questions evolution of these modules, a correspond-
• How does development influence phenotypic Eco–evo–devo
ence with genetic modules that maintain the
variation?
autonomy of the anatomical modules might
• How does development contribute to phenotypic novelty? Nature Reviews | Genetics be expected; however, this is not always
• How does development affect the organization of phenotypes? the case. Numerous examples show that the
Eco–evo–devo questions molecular and developmental pathways can
• How does the environment interact with developmental processes? change over evolutionary time, whereas the
• How does environmental change influence phenotypic evolution? anatomical modules (homologues) remain
constant (BOX 2). The phenotypic end-states
• How does developmental evolution affect the environment?
seem to have greater importance than the

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maintenance of the pathways by which these


Mouse Vole
states can be reached40. For this reason, the
evolution of anatomical homology can- Predicted Observed Predicted Observed
not be explained solely by continuities of
Stage E14
gene regulation; rather, as the modularity
approach suggests, it will be necessary to
identify evolutionarily dissociable units of
developmental systems, which might include
Stage E15
epigenetic interaction systems as well as
regulatory networks45.

Phenotypic plasticity. Phenotypic plasticity,


the capacity of a single genotype to produce Stage E16+
different phenotypes in response to changing
external conditions, emerges as another major
Figure 1 | A morphodynamic model relating shape change and gene activation in the develop-
theme in evo–devo. One way to approach
ment of mammalian molar teeth. Viewed from above, tooth crowns are Nature characterized
Reviews |by a spe-
Genetics
the role of plasticity in evolution is through cific number and location of cusps, which arise at the sites of epithelial signalling centres called
‘developmental reaction norms’46; that is, enamel knots. The model produces three-dimensional shapes of tooth crowns, and of activator and
functions that relate the response of a geno- inhibitor concentrations that affect cell proliferation in enamel knot regions. The simulated shape
type to a specific environmental perturbation. changes during different stages of tooth growth predict areas of activator and inhibitor expression
Although such effects eventually feed into (in the left-hand columns) that can be compared with actual patterns of gene signalling that mark
developmental genetic pathways, the actual the enamel knots in embryonic stages of tooth development (for mice and voles, right-hand col-
phenotypic change depends on epigenetic umns). In each case, the predicted concentration peaks of activator and inhibitor activity (coloured
factors including diet, pH, humidity, tempera- red and orange, respectively) in simulated shapes resemble the observed activity patterns of gene
ture, photoperiod, seasonality, population signalling families in natural tooth development. Coexpression domains of fibroblast growth factor 4
(Fgf4), sonic hedgehog (Shh), lymphoid enhancer binding factor 1 (Lef1), and p21 (also known as
density or the presence of predators. The
Cdkn1a ) in the cores of the enamel knots (coloured yellow) are surrounded by areas lacking Fgf4
physiological and metabolic processes that (coloured orange) and Fgf4 + Lef1 expressions (coloured red), corresponding with regions of activa-
mediate interactions between the environ- tion and inhibition of cell proliferation. The results demonstrate that the shape of the developing
ment and development, such as endocrine tooth has a causal role in the placement of enamel knots; that is, the evolutionary variation of tooth
and hormone activity, have a key role16. Other shape will automatically lead to a change in the placement and number of cusps. Modified with
approaches focus on seasonal47 or predator- permission from REF. 62  (2002) National Academy of Sciences (USA).
induced48 polyphenisms, changing nutrient
regimes49 and environmental regulation50.
Developmental plasticity is important in the evolution of butterfly eyespots54, insect templates, which can be exploited by further
in evo–devo because it gives explicit wings55, cephalopod tentacles56, tetrapod evolution, are thought to have an important
consideration to the relationships among digits57, bird feathers58 or the turtle cara- role in the evolutionary origination and
the variation of traits, natural selection, pace59. Most cases indicate the redeployment innovation of phenotypic characters26,53.
environmental influences and generative of existing regulatory circuits in new devel- Through the impact of these themes and
bias. Plasticity implies that selection can opmental contexts, but it is often difficult to of other evo–devo concepts8,61, a significant
operate on various stages of ontogeny, and it demonstrate that such changes were actually change in the framing of research ques-
provides a key to instances of rapid reaction responsible for the evolutionary origination tions and the interpretation of results is in
of populations to changing environmental of the novel character because we assess gene progress. It is now a widespread requirement
conditions. Studies of environment-dependent regulation by the study of extant species. in developmental biology that its models
trait correlations and plastic responses As an alternative approach, evo–devo should not merely explain the extant condi-
across different environments show that also probes the mechanisms of epigenetic tion, but must also be able to account for the
changing conditions can be met with causation in morphological innovation. evolutionary origination and modification of
coordinated reactions. Selection might favour Developmental systems utilize several a given system62. By contrast, the important
developmental systems that actually reduce basic chemicophysical mechanisms that are consequences of evo–devo for a more com-
integration, in order to allow adjustments of common to non-living and living materials, prehensive theory of organismal evolution
the relationships among traits in response to which have thus been termed ‘generic’60, have not yet been equally appreciated.
environmental circumstances15,51. such as viscoelasticity, differential cohesivity,
biochemical diffusion and oscillation, or Theoretical implications
Innovation. Innovation is a third area in mechanochemical excitability. In the context Evo–devo represents a causal mechanistic
which evo–devo makes an original contribu- of evolving development, such mecha- approach towards the understanding of phe-
tion to evolutionary theory52,53. Whereas nisms can give rise to ‘generic forms’ that notypic change in evolution. In this it differs
function shift, macromutation, and symbio- are products not of deterministic genetic significantly from the prevailing focus in the
sis were once invoked to explain the origin of programmes, but of the properties of the standard theory of evolution, which is based
phenotypic novelties, evo–devo concentrates material cell aggregates, resulting in tissue on the correlation of phenotypic character
on the contributions of development. Several layering, lumen formation, segmentation, variation with statistical gene frequencies
gene regulatory changes were found to be and other forms of three-dimensional pat- in populations. The explanation of adaptive
associated with instances of novelty, as seen terning (FIG. 2). These simple morphogenetic change as a population-dynamic event was

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Box 2 | Examples of conserved phenotype despite altered development phylogenetic lineage39, evo–devo suggests
that development might actually reduce
• Segmental organization is established by different morphogenetic modes in short-germ and constraints on change and thus facilitate
long-germ insects, and entails different roles for homologous genes33. new variational potential51,65. The correlation
• Cell-lineage specification and gastrulation mechanisms differ in sea urchins that undergo of data from ecology with physiological
direct development (with no larval stage) from those that undergo indirect development parameters, developmental reaction norms
(including a larval stage)78,79. and gene regulatory pathways enables new
• The mode of determination of the anchor cell and its further role in vulva development differ modelling strategies in evo–devo66 and
radically in different species of nematodes80,81. includes the possibility of linking population
• The cartilage precursor of the lower jaw is induced by different tissues and at different genetics with plasticity research15,17,67.
developmental stages in cyclostomes, amphibians, birds and mammals37.
• Identical shapes of mammalian teeth can be attained by different parameter changes in Emergence. Whereas evolvability addresses
morphodynamic gene networks62. the contribution of development to generat-
ing phenotypic variation, emergence refers
to phenomena outside the scope of variation,
the central goal of the Modern Synthesis. Evolvability. Evolvability, the intrinsic in particular to the modes of origination,
By contrast, evo–devo seeks to explain potential of a given lineage to produce herit- innovation and novelty in phenotypic evolu-
phenotypic change through the alterations able phenotypic variation, is traditionally tion. The gene-centric perspective of the
in developmental mechanisms (the physical explained by the amount of genetic variation Modern Synthesis glossed over the innova-
interactions among genes, cells and tissues), that is achieved through mutation, recom- tion problem by tacitly assuming that genes
whether they are adaptive or not. This bination or drift. Indeed, the variations of are the sole variable determinants of struc-
addresses many of the constituent features of colour patterns in vertebrates63 and insects64 ture and that they act in linear fashion. It was
phenotypic change, such as the generation demonstrate that single-gene mutations or sufficient to focus on the dynamics of alleles
of new structural elements (novelty), the relatively few regulatory changes can result in populations, assuming the prior existence
establishment of standardized building units in a wide range of variant patterns. Selection of the phenotypic entities to which they cor-
(modularity, homology), the arrangement of acting on such loci can translate directly into respond. No feedback between genes, gene
such units in lineage-specific combinations colour variations, but for more complex phe- products, the material properties of devel-
(body plans), and the repeated genera- notypic traits the polygenic and pleiotropic opmental systems and their environments
tion of similar forms in independent taxa conditions make the relationship between was taken into account. Yet the capacities for
(homoplasy). In addition, evo–devo aims at genotype and phenotype far less direct. Evo– emergence lie precisely in these interactions.
explaining how development itself evolves devo argues that the variational capacities of In evo–devo, development is regarded not
and how the control of developmental genomes are functions of the developmental merely as an effector of genetic variation, but
processes is brought about by the interplay systems in which they are embedded, for also as a potent locus of innovation.
between genetic, epigenetic and environ- example, through their modular organiza- A theory of emergence complements the
mental factors. With these goals, evo–devo tion, the dynamics of their mechanistic theory of adaptation through its account for
moves the focus of attention to the qualita- interactions and their non-programmed the appearance of phenotypic novelties in
tive phenomena of phenotypic organization physical properties. Evolvability can now be evolution. An important starting point for
and their mechanistic causes. The major analysed and interpreted in terms of devel- this new approach is the recognition that
departures of evo–devo from the standard opmental variation and plasticity. Whereas novelties represent a particular class of
theory are characterized by the terms such interactions would usually be seen as phenotypic change, distinct from variation
evolvability, emergence and organization. constraining the variational capacity of a and not a direct consequence of natural

Glossary
Canalization Heterochrony Mechanochemical excitability
The developmental buffering of phenotypic traits Evolutionary changes in the timing of developmental The capacity of cells to respond to physical
against genetic and environmental perturbations. events, such as the onset, offset or tempo of a process. and chemical stimuli.

Generative bias Homeotic transformation Ontogeny


A tendency in the production of phenotypic variation The change of one body part into another, caused by The course of individual development of an
or innovation that is caused by the properties of the a genetic or epigenetic perturbation of development. organism from the fertilized egg to the adult.
developmental system.
Morphospace Phenocopy
Generic form A three-dimensional matrix of possible morphologies An epigenetically induced phenotypic character
Biological forms that result from the autonomous that is larger than the set of actual that resembles a genetically determined character.
interactions within and among cell aggregates, based morphologies that are realized in nature.
on their physical properties, without a programme-like Polyphenism
genetic control. Modern Synthesis Alternative phenotypes that arise from a single genotype
The prevailing theoretical framework of evolution as a result of differing environmental conditions.
Genotype–phenotype map that resulted from a combination of genetics,
A mathematical characterization of the systematics, comparative morphology and Viscoelastic
correspondence of a set of genotypes with a set palaeontology in the 1930s and 1940s. Also Materials, such as cell masses, that have both viscous
of phenotypes. called Evolutionary Synthesis or Synthetic Theory. and elastic properties when they respond to strain.

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selection53. Selection cannot set in until there by the standard theory. The theoretical developmental systems. In this, evo–devo
are entities to be selected. This conundrum framework of the modern synthesis rests introduces a shift of emphasis regarding the
of the standard model disappears when selec- on a population genetics core that describes role of natural selection in phenotypic evo-
tion is regarded as a general and unspecific how the relationships between genetic lution. Whereas in the Modern Synthesis
background condition, whereas the actual variation, heredity and reproduction framework the burden of explanation rests
morphological outcome, novelty, results affect population dynamics. By contrast, on the action of selection, with genetic vari-
from the specific dynamics of the develop- evo–devo theory establishes how the ation representing the necessary boundary
mental system that is under modification17,26. relationships between genes, cells and condition, the evo–devo framework assigns
Empirical research in evo–devo has begun to developmental interactions affect the evolu- much of the explanatory weight to the
concentrate on these issues53, and the role of tion of phenotypes. Hence, evo–devo does generative properties of development, with
emergence in evolutionary theory is gaining not invalidate the formal framework of the natural selection providing the boundary
crucial support2,68. The power of natural Modern Synthesis, but adds another level condition. When natural selection is a
selection as a unique guiding force of of explanation. The reach of evolution- general boundary condition, the specificity
evolution is thus challenged by evo–devo. ary theory is expanded in that evo–devo of the phenotypic outcome is determined
accounts not for what kinds of variation by development. Thus, evo–devo moves the
Organization. Evo–devo makes it possible are going to be maintained through focus of evolutionary explanation from
to address the characteristic organizational natural selection, but also what kinds of the external and contingent to the internal
features of phenotypic evolution, such as variation can possibly arise from specific and inherent. It posits that the causal basis for
modularity, homology, homoplasy and
body plans. This was not the case with a
population-genetic approach and, as a con-
sequence, these topics had been sidestepped
by the Synthetic Theory 69,70. Following the
discovery of profound homologies in
the regulatory genomes of anatomically
diverse organisms, gene-based definitions
of morphological homology had emerged71,
but were soon found to be inadequate72,73.
Although the most notoriously conserved
developmental control genes, the homeotic
genes, exhibit non-homologous expres-
sion domains in the embryos of different
phylogenetic lineages, the reverse also
applies: homologous structures can be speci-
fied by non-homologous genes74 (BOX 2).
By contrast, evo–devo-based concepts of
homology emphasize the commonalities of
developmental pathways75 and the modular-
ity of developmental processes73. Another
characteristic property of homology is seen
in its organizing role in the genetic and
epigenetic integration of developmental
systems44. Epigenetic integration leads to the
hierarchization of regulatory networks and
to the fixation of the patterns of phenotypic
construction in spite of changes in their indi- Cell properties Patterning mechanisms
vidual molecular and developmental compo-
sition25. In this sense, increasingly elaborate Differential adhesion Diffusion gradient Chemical oscillation
gene regulatory systems serve to reproduce
morphological templates. The close map-
Cell polarity Sedimentation gradient Reaction diffusion
ping between genotype and morphological
phenotype can then be interpreted as not the
cause but a consequence of evolution26. Thus, Figure 2 | Generic forms that result from the interaction of basic cell properties with different
pattern-forming mechanisms. Differential adhesion and cell polarity (centre Nature Reviews
boxes), when| Genetics
modu-
evo–devo recognizes in phenotypic organiza-
tion not only an outcome of evolution, but lated by different kinds of physical and chemical patterning mechanisms (blue boxes), lead to standard
organizational motifs. On the upper left to lower right axis, differential adhesion properties and their
also a feature that, in turn, has profound
polar distribution on cell surfaces lead to hollow spheres when combined with a diffusion gradient,
effects on further evolution, a claim that is and to invaginated spheres when combined with a sedimentation gradient. On the lower left to upper
supported by experiment76 and modelling62. right axis, the combination of differential adhesion with a reaction-diffusion mechanism generates
With its contributions to evolvability, radially periodic structures, whereas a combination with chemical oscillation results in serially periodic
emergence and organization, evo–devo structures. Early metazoan body plans represent an exploitation of such generic patterning repertoires
addresses several issues that were neglected Modified with permission from REF. 82  (2006) UBC Press.

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