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Article history: Several biodiversity features can be linked to landscape heterogeneity, that, in turn, can be informative
Received 15 March 2016 for management and conservation purposes. Usually, the more the landscape is complex the more the
Received in revised form 9 July 2016 biodiversity increases. Biodiversity indicators can be a useful tool to assess biodiversity status, in func-
Accepted 25 July 2016
tion of landscape heterogeneity. In this study, we developed a biodiversity indicator, based on Shannon
Available online 4 August 2016
diversity index and built from distribution maps of protected species. With such an approach, we seek
to evaluate the feasibility of using a combination of target species as a surrogate for assessing the status
Keywords:
of the whole bird community. Our approach was spread over multiple spatial scales, to determine which
Landscape metrics
Species distribution model
was the most informative. We selected four species protected by European regulation and generated
Heterogeneity a presence-absence map from species distribution modelling. We, therefore, used the FRAGSTATS bio-
Bird community diversity metric to calculate Shannon index for the overlapped presence-absence maps, at two spatial
Umbrella species scales (500 m and 1000 m). Then, the relationships with the whole community was assessed through gen-
eralised least square models, at the spatial scale of 4 ha, 9 ha and 25 ha. Results showed that the higher
rate of variability of community was explained by the biodiversity indicator at 1000 m scale. Indeed, the
more informative spatial scale for the whole bird community was 9 ha. In addition, a pattern emerged
about the relationships between biodiversity indicator and community richness, that is worth of further
research. Our study demonstrates that the usefulness of surrogate species for biodiversity and community
assessment can become clear only at a certain spatial scales. Indeed, they can be highly predictive of the
whole community, and highly informative for conservation planning. Moreover, their use can optimize
biodiversity monitoring and conservation, focusing on a small number of noteworthy species.
© 2016 Elsevier Ltd. All rights reserved.
http://dx.doi.org/10.1016/j.ecolind.2016.07.043
1470-160X/© 2016 Elsevier Ltd. All rights reserved.
628 F. Valerio et al. / Ecological Indicators 71 (2016) 627–635
2013; Bütler et al., 2004), the role of flying squirrel in predict- be even more difficult, due to the difficulty of gaining reli-
ing the presence of old-growth forest associated species (Hurme able data over large areas (Simberloff, 1998). Main complications
et al., 2008). A consequence of the relationship with the envi- arise in remote regions, where occurrence data are not available.
ronment is that often umbrella species are considered indicator To circumvent this problem, surrogate species should be tested
species too (Welsh and Droege, 2001). Their presence/absence can over data-rich areas, through high predictive models, including
indicate the occurrence of particular ecological conditions, and ecologically relevant environmental predictors (Ferrier, 2002). Fre-
supply information on species richness or ecosystem functioning quently, the use of landscape- scale umbrella species imply a
(Fleishman et al., 2005; Mac Nally and Fleishman, 2004; Welsh multi-species approach. Such an approach can ensure the exporta-
and Hodgson, 2013). The shift from umbrella to indicator defini- bility of the methods, regardless of landscape heterogeneity and
tion imply the use of the species as a measure of environmental the prediction of species richness in data-poor areas (Banks-
conditions (Welsh and Droege, 2001). Commonly, researchers and Leite et al., 2011; Fleishman et al., 2005). Another approach
practitioners are interested in biodiversity indicators, i.e. those regards the use of landscape metrics or environmental predic-
species which presence is related to high species richness. How- tors as a biodiversity indicator (Lindenmayer et al., 2002; Noss,
ever, it can be difficult to identify a standard set of conditions to rely 1999). However, the response of a species to landscape depends
on for choosing such species (Branton and Richardson, 2011; Lawler on several conditions dictated by its own life history (Ducci
and White, 2008), but experimental methods showed that bio- et al., 2015; Schindler et al., 2013). Therefore, a multi-species
diversity indicators can be regionally or taxonomically restricted approach is needed to address the response of landscape-scale
(Lambert, 2011; Stoch et al., 2009). In most cases, however, bio- indicators, taking into account the interaction of multiple spatial
diversity indicators are considered endemic or otherwise typical scales (Bellamy et al., 2013; Fearer et al., 2007; McAlpine et al.,
of the region of interest and/or the most common in their taxo- 2008).
nomic group (Lambert, 2011; Sinsch et al., 2011), limiting de facto In this study, we tested a multi-species biodiversity index as a
the use of the umbrella species or biodiversity indicators. There- predictor of the whole species richness (Fig. 1). In doing so, we com-
fore, a generalisation of the concepts is not yet feasible (Favreau muted the environmental suitability (ES) of surrogate species into
et al., 2006). the index at different spatial scales. Our aim is to provide support
The usefulness of a surrogate species (i.e. an umbrella or a bio- to the idea that a set of surrogate species, representative of differ-
diversity indicator) depends also on the spatial extent at which ent habitats, can predict the species richness across the landscape.
it is used to infer about other species, since species and envi- We seek to deduce useful guidelines for landscape management.
ronments can interact over many spatial scales (Wiens, 1989). In doing this, we selected four bird species, protected by Euro-
Landscape-scale conservation is a major issue for practition- pean regulations (Birds Directive), inhabiting all the habitat types
ers, especially in the face of increasing land use (Lindenmayer present in the study area:
et al., 2008). Finding umbrella species at landscape level can
Fig. 1. Workflow describing the modelling process. Species occurrences and environmental layers are gathered together to produce presence/absence maps. These, in turn,
are processed through FRAGSTATS to obtain a biodiversity indexes, and then, the indexes are related to species richness. In our case, (a) we obtained the species occurrence
of the four candidate species (fig. x) and the environmental layers (see Methods section and Supplementary materials). (b) Species occurrence undergone a bias-correction
procedure. (c) Presence/absence maps were extracted using a 10th percentile threshold. (d) A multispecies presence/absence map was developed, discretising as separate
patches the overlaps between the four PA maps. (e) The biodiversity index was calculated over the multispecies PA map, implementing two different spatial scales (moving
windows). (f) In parallel, bird community count data were aggregated over three spatial scales (three grids). (g) Other three grids were implemented for ecotonal areas only.
(h) GLS were built to test the relationship between the biodiversity index and the bird community richness.
F. Valerio et al. / Ecological Indicators 71 (2016) 627–635 629
Fig. 2. Study area. The site is located in central Italy, centroid coordinates 41◦ 50 N; 13◦ 57 E.
1) The rock partridge Alectoris graeca, typical of high mountain influenced by landscape structure and, not the least, by the occur-
slopes and rocky prairies (Brichetti and Fracasso, 2004); rence of other species (Kissling et al., 2012; Wisz et al., 2013). As
2) The Eurasian nightjar Caprimulgus europaeus, typical of forest a consequence, landscape metrics can be used as a proxy of biodi-
edges (Brichetti and Fracasso, 2006); versity indicators (Schindler et al., 2013). Indeed, we computed a
3) The collared flycatcher Ficedula albicollis, typical of beech forests biodiversity index as a spatial metric, where each species represent
(Brichetti and Fracasso, 2013); a specific habitat. We hypothesize that the combination of species
4) The red-backed shrike Lanius collurio, typical of shrubland with different habitat requirements can predict species richness
(Brichetti and Fracasso, 2011). over the whole landscape. To test this, we approached to such an
issue at different spatial scales, comparing the results.
Table 1
variables selected for species distribution modelling (i.e. variables used by MaxEnt to derive species’ distribution) and relative importance. NA = not applicable, variable not
included in model.
83 km2 wide, with a mainly limestone bedrock, located in the cen- tor without the specific mesh and comparing the results with the
tral Apennines, L’Aquila province, Abruzzo Region, Italy. Elevation estimated richness for the whole grid. Comparison showed that
ranges from 1061 to 2285 m a.s.l., with mountain ridges oriented any mesh contributed significantly more to species richness. How-
NNW to SSE. Total yearly precipitations averaged across 20 years ever, species richness may increase in marginal areas more than
from four meteorological stations located immediately outside the in core areas, due to the proximity of different habitats (McGarigal
study site, ranged from ca. 850 to >1100 mm with a monthly min- and McComb, 1995) and a positive effects of habitat fragmentation
imum from June to August and maximum precipitations recorded (Fahrig, 2003). For this reasons, a subset of meshes covering eco-
in Autumn and Winter, usually as snow from late-November until tones were extracted from every grid. Ecotones were those patches
March. Annual average temperature ranges from 6.8 to 10.8 ◦ C, that were not recognised as core area by FRAGSTATS, i.e. those area
peaking in August (from 20.4 to 15.8 ◦ C), and usually falling below that represented the interior area of patches after a 200 m edge
0 ◦ C in winter months (from −1.3 to 3.0 ◦ C on January). Morphology buffer was eliminated.
is variable, from flat to gently-rolling mid-to-high elevation pas-
tures, to steep and usually forested mountain slopes, from small
and medium-sized gorges to karstic plateaus. Only one, usually 2.3. Statistical analyses
permanent, stream crosses the area at its western limit, though
many springs are scattered and used by livestock breeders. A high The environmental suitability (ES) of the selected species A.
elevation (1881 m a.s.l.) small (2 ha) glacial lake is present. Tran- graeca, C. europaeus, F. albicollis and L. collurio was calculated using a
shumance characterize the area, which hosts a few thousands of machine learning technique based on the maximum entropy (Max-
sheep from mid-June to early-October, as well as a few cattle and Ent) algorithm (Phillips et al., 2006) (Fig. 1a–d). The building of
horses (mostly belonging to resident breeders). Beech woods (Fagus the SDMs took advantage of the presence data in the databases of
sylvatica) (30%) a wide array of both primary and secondary pas- the Forest Service (Corpo Forestale dello Stato − Ufficio Territori-
tures and grasslands (50%), bare rocks, screes and rocky grassland ale Biodiversità di Castel di Sangro), the National Research Council
(ca. 10%) with a few conifer reforestations and cultivations, as well (Consiglio Nazionale delle Ricerche) and the MITO2000 project
as limited shrubland characterize the vegetation and land use of (Fornasari et al., 2010) (Fig. 3). The whole dataset was processed to
the area; a fairly widespread network of unimproved pasture and reduce spatial autocorrelation and multicollinearity through SDM-
forest roads (but for its southernmost and highest elevation por- toolbox (Brown, 2014) (Fig. 1 b). The processed datasetconsisted
tion) crosses the area, which hosts a very small human settlement of 108 presence records, divided as such: 14 for A. graeca; 16 for C.
near its northern edge comprising some small family raised farms. europaeus; 42 for F. albicollis; and 36 for L. collurio. The environmen-
Among wildlife, the brown bear (Ursus arctos) and the wolf (Canis tal predictors used to derive ES maps consisted of 6 layers (Table 1).
lupus) are present, along with the red- and the roe-deer (Cervus Firstly, the land cover (CORINE 2006 III level) (EEA, 2012; European
elaphus, Capreolus capreolus, respectively) and the wild boar (Sus Union, 1994), a forest typology map (including 26 categories) and a
scrofa). Hunting is mainly limited at the very southern and eastern forest structure map (including 4 categories) (Marchetti et al., 2009)
border of the area. were used as categorical habitat maps. A digital elevation model
(provided by the national Institute for Environmental Protection
and Research, available at http://www.sinanet.isprambiente.it/it)
2.2. Richness estimation was used to derive the elevation, slope and aspect, trough GIS. In
addition, landscape metrics of patch richness and core area were
Presence data were supplied by ad hoc surveys and by the implemented through FRAGSTAT v. 4.2.1.603 (McGarigal et al.,
database of the Forest Service (Corpo Forestale dello Stato − Uffi- 2012), with a moving window of 500 m and 200 m, respectively
cio Territoriale Biodiversità di Castel di Sangro) (Anon, 2008). (details are provided in Appendix S1). According to their ecological
Such database include data collected usually with two differ- requirements, not all layers were used for every species (Table 1).
ent techniques: passive hearing or playback stimulation. Layout Analyses were carried out at the finest possible scale, i.e. 20 × 20 m
of sampling points followed stratified-systematic or stratified- grid, due to the absence of relevant information in the literature,
random approach. Presence data were aggregated over multiple except for L. collurio, for which was used a 100 × 100 m grid that was
grids. Specifically, three grids were used: one with mesh area of 4 ha proved consistent by Brambilla et al. (2009). Every dataset included
(GR4), one with mesh area of 9 ha (GR9) and one with mesh area of also 10.000 background points and was split into a training dataset,
25 ha (GR25) (Fig. 1f–g). Species richness for every grid was evalu- including a randomly selected 70% of the data, and a testing dataset,
ated using the incidence-based coverage estimators (ICE) (Lee and including the remaining 30%. For each species, model ran 50 times
Chao, 1994). Since no difference emerged between empirical and and each run was iterated at most 1.000 times, through bootstrap
estimated richness, simple counts were considered exhaustive of estimation, and results averaged. The area under the curves (AUC)
the local species richness (Table 2). The contribution of every mesh formed by the receiver operating characteristics (ROC) was used to
to overall species richness was evaluated running the ICE estima- assess model fit (Hanley and McNeil, 1982).
F. Valerio et al. / Ecological Indicators 71 (2016) 627–635 631
Fig. 3. Species occurrences employed in the distribution modelling and potential distribution within the study area. Shaded area = potential distribution; dot = presence
point; a = rock partridge; b = Eurasian nightjar; c = collared flycatcher; d = red-backed shrike. The inlets show occurrence points outside the study area. The arrow indicate a
point relocated on the map for better visualization.
Table 2
grid characteristics. Richness is estimated through ICE estimator. Standard deviation of observed richness per mesh is in brackets.
Acronym Mesh area N. of meshes Observed species richness Estimated richness Mean observed richness per mesh
The final ES map of every species was used to generate a with FRAGSTATS, the Shannon’s diversity metric (L127 Shannon’s
multi-species biodiversity indicator (Fig. 1e). First, the outputs Diversity Index SHDI in FRAGSTATS) were computed, generating
of MaxEnt were translated in presence-absence map, using the an output where small values indicate landscape homogeneity for
threshold of the 10th percentile of the training presence. Then, a the presence of few umbrella species, and high values indicate land-
new categorical map was generated from the overlap of discretized scape heterogeneity for the presence of many umbrella species. This
presence-absence maps, with as many categories as species and a procedure was implemented at two spatial scales: a 1000 m mov-
category representing the suitability of two or more species. Again ing window (H1000) and a 500 m moving window (H500). Since
632 F. Valerio et al. / Ecological Indicators 71 (2016) 627–635
Table 3 Table 4
Spatial autocorrelation and heteroscedasticity within each dataset. GLS parameter estimation for every dataset, with Likelihood Ratio Test (LRT) per-
formed over the null model and pseudo-R2 to measure explained variability. Dataset
Dataset Moran I p-value Levene F p-value acronyms are explained in Table 2.
GR4 0.47 <0.001 2.97 0.054
Dataset Parameter Estimates LRT pseudo-R2
GR4eco 0.49 <0.001 18.01 <0.001
GR9 0.52 <0.001 9.05 <0.001 GR4 i 7.75*** 0.53 −0.014
GR9eco 0.57 <0.001 21.62 <0.001 H500 2.83
GR25 0.49 <0.001 2.27 0.11 GR9 i 4.81*** 14.3*** 0.345
GR25eco 0.53 <0.001 12.61 <0.001 H500 3.57***
GR25 i 7.2*** 1.48 0.116
H500 1.07
every target species was representative of a specific habitat, in this GR4eco i 5.52*** 14.15*** 0.083
way we assessed also the presence of different habitats using two H500 2.94***
GR9eco i 4.51*** 15.69*** 0.27
different spatial scales. High values, representing portions of terri- H500 3.54***
tory where combination of the species co-occur, indicate also area GR25eco i 7.23*** 2.81 0.093
of high conservation value. H500 1.1
Finally, six datasets were obtained and replicated for the two GR4 i 5.27*** 6.10* −0.007
H1000 2.83**
spatial scales of the biodiversity indicators, H1000 and H500
GR9 i −4.16*** 30.72*** 0.876
(Table 2). Taking into account the strong spatial structure of the H1000 10.75***
richness data, the relationship between landscape diversity (as GR25 i −0.73 17.88*** 0.732
expressed by the biodiversity index) and species richness (within H1000 7.15***
the whole community) was investigated through generalised least GR4eco i 1.76 29.7 0.068
H1000 5.77 *** ***
square models (GLS) (Beale et al., 2010). Before applying GLS, data GR9eco i −3.27*** 0.83
64.63***
were tested for spatial autocorrelation through Moran’s I statistic H1000 9.90***
(Cliff and Ord, 1981; Moran, 1950). Data were also tested for het- GR25eco i 3.96*** 11.4 0.336
eroscedasticity with a Levene F-test, dividing the dataset into three H1000 3.87*** ***
groups of high, medium and low richness, separated by first and i = intercept.
*
third quartiles (Fox, 2008). In this way, we assessed the heterogene- p < 0.05.
**
ity among central and extreme values of richness. Tests and GLS p < 0.01.
***
p < 0.001.
were applied for every dataset. GLS was built maximising the log-
likelihood, allowing to evaluate the predictability against the null
model through a likelihood ratio test. In addition, pseudo-R2 was
developed for every model as a measure of explained variability
(Griffis and Stedinger, 2007). Statistical analyses were conducted
with R software and packages ‘nlme’ and ‘spdep’ (Bivand and Piras,
2015; Pinheiro et al., 2015; R Core Team, 2015).
3. Results
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R. Toffoli and P. Culasso kindly contributed with some European
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Appendix A. Supplementary data species distribution modelling. Landsc. Ecol., http://dx.doi.org/10.1007/
s10980-015-0237-x.
EEA, 2012. Corine Land Cover 2006 raster data.
Supplementary data associated with this article can be found, Elith, J., Leathwick, J.R., 2009. Species distribution models: ecological explanation
in the online version, at http://dx.doi.org/10.1016/j.ecolind.2016. and prediction across space and time. Annu. Rev. Ecol. Evol. Syst. 40, 677–697,
07.043. http://dx.doi.org/10.1146/annurev.ecolsys.110308.120159.
European Union, 1994. CORINE Land Cover Technical Guide.
EUR-OP/OOPEC/OPOCE.
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