Professional Documents
Culture Documents
Research
in angiosperms
Martin R. Broadley1, Neil J. Willey 2, Janine C. Wilkins2, Alan J. M. Baker3, Andrew Mead1 and Philip J. White1
1
Horticulture Research International, Wellesbourne, Warwick CV35 9EF, UK; 2University of the West of England, Frenchay, Bristol BS16 1QY, UK;
3
University of Melbourne, Victoria 3010, Australia
Summary
Author for correspondence: • The influence of phylogeny on shoot heavy metal content in plants was
Martin R. Broadley investigated and the hypothesis tested that traits impacting on the accumu-
Tel: +44 (0) 1789 470382
lation of cadmium, chromium, copper, nickel, lead and zinc in plant shoots are
Fax: +44 (0) 1789 470552
Email: martin.broadley@hri.ac.uk associated.
• Data suitable for comparative analyses were generated from a literature survey,
Received: 13 March 2001
using a residual maximum likelihood (REML) procedure. Both pair-wise regressions
Accepted: 5 June 2001
and principal components analyses (PCA) were performed on independent contrasts
of shoot metal content.
• Significant variation in shoot metal content occurred at the classification level of
order and above, suggesting an ancient evolution of traits. Traits impacting on the
accumulation of metals in plant shoots were associated.
• This information can be used to improve predictions of soil-to-plant metal transfer,
to formulate hypotheses on the origins of metal-accumulating phenotypes and to
inform the exploitation of plant genetic resources for nutritional improvement and
phytoremediation.
Key words: Cd, Cr, Cu, heavy metals, hyperaccumulation, Ni, Pb, Zn.
10 Research
Fig. 1 Mean relative shoot metal contents of angiosperm orders. Data were obtained from loge-transformed data from 44 studies (Appendix 7).
These data were subject to residual maximum likelihood (REML) analyses and hierarchical ANOVA. Mean values are normalised for each metal
with mean and standard deviation values for each metal presented prior to normalisation. The phylogeny is based on multi-gene sequence data
(Soltis et al., 1999). The number of hyperaccumulator taxa in these orders are those listed at 1st January 2000 (Reeves & Baker, 2000; RD Reeves
& AJ Baker, unpublished).
Research
Erysimum repandum 0.74 – 0.01 – 0.45 – 0.65 0.46 – 0.91 Silene vulgaris 0.34 – 0.17 0.07 - 0.07 – 0.66
11
NPH_238.fm Page 12 Wednesday, August 29, 2001 5:13 PM
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Table 1 continued
Brassicales Raphanus sativus 0.26 - – 0.96 1.85 1.22 – 0.04 Caryophyllales Spinacea oleracea 0.80 – 1.00 0.38 – 0.07 – 0.59 1.24
(cont.) (cont.)
Rorippa nasturium-aquaticu 0.98 - - - - - Ranunculales Consolida orientalis – 0.10 0.60 – 0.34 0.00 – 0.77 1.28
Sinapis alba 0.37 - - - - - Delphinium peregrinum 0.93 – 0.57 – 0.45 – 1.13 – 0.11 0.52
Thlaspi caerulescens 0.82 - - - – 0.95 3.49 Nigella arvensis 0.54 – 0.40 – 0.07 – 1.22 – 0.43 0.32
Thlaspi ochroleucum –0.17 - - - – 0.57 1.24 Papaver somniferum 0.40 - - - - -
Thlaspi rotundifolium - - - - – 0.26 - Poales Aegilops geniculata 0.54 0.46 – 0.60 0.10 2.56 – 0.38
Saxifragales Sedum spp. - – 1.87 - – 1.27 - - Aegilops uniaristata 0.54 0.63 – 0.60 0.01 1.08 – 0.65
Apiales Apium graveolens 0.45 – 0.91 0.02 – 0.02 – 0.15 1.68 Agrostis capillaris – 1.37 - - 0.99 0.91 -
Coriandrum sativum - – 1.72 0.28 – 1.04 – 2.11 - Avena sativa – 1.45 - - 0.64 0.65 -
Daucus carota –0.64 - - - - - Bromus squarrosus 0.63 – 0.13 – 1.26 – 0.12 – 0.54 – 0.96
Pastinaca sativa –1.52 - - - - - Carex stricta - - - – 1.65 - -
Petroselinum crispum –1.07 – 1.17 – 1.32 – 0.35 – 1.94 – 0.41 Dactylis glomerata – 0.73 - - - - -
Dipsacales Sambucus ebulus –0.10 0.77 – 0.54 – 0.51 – 0.66 – 0.11 Festuca ovina - - - 0.26 – 0.44 -
Asterales Achillea coarctata 0.54 – 0.62 – 0.18 – 0.69 – 0.72 – 1.25 Festuca pratensis – 0.53 - - - - -
Achillea millefolium - - - - - – 1.24 Festuca rubra – 0.82 - - 0.23 – 0.17 -
Ambrosia artemisiifolia - - - - – 0.67 - Holcus lanatus – 0.98 - - - - -
Anthemis tinctoria - - 1.65 - 0.72 0.06 Hordeum distichum – 0.73 - - - - -
Arctium lappa –0.91 - - - - - Hordeum sativum – 1.48 - - - - -
Campanula ligulata - - 1.71 - 0.85 0.23 Hordeum vulgare – 0.99 - - 0.07 – 0.10 -
Centaurea rupestris - –1.63 - – 0.92 - - Koeleria eriostachya 0.54 – 0.51 – 0.45 – 0.67 4.70 0.10
Cichorium intybus –0.24 – 0.28 – 0.69 – 0.39 – 0.17 0.50 Lolium multiflorum – 0.47 - - - - -
Chrysanthemum coronarium 0.05 - - - - - Lolium perenne – 0.36 - - 0.46 0.20 -
www.newphytologist.com © New Phytologist (2001) 152: 9–27
Ditrichia viscosa –0.10 0.98 – 0.17 – 0.03 – 1.04 – 0.81 Oryza sativa – 2.37 - - 0.21 - -
Erigeron canadensis –0.57 – 0.44 - – 0.67 - - Phleum pratense – 0.66 - - 0.53 0.05 -
Eupatorium capillifolium –1.20 – 0.04 - – 0.70 - - Poa trivialis – 0.10 – 0.17 – 2.57 0.07 – 1.22 – 0.11
Filago eriocephala 1.36 0.88 1.24 1.38 0.24 0.99 Secale cereale - - - - 0.82 -
Filago vulgaris –0.10 0.28 – 0.66 – 0.32 – 1.04 – 0.93 Sorghum vulgare – 0.05 - - - - -
Helianthus annuus –0.72 - - - - - Triticum aestivum – 0.67 - 0.60 –1.43 – 0.29 – 1.19
Inula germanica 2.44 1.91 0.64 0.79 0.65 0.04 Triticum durum 1.82 - - - - -
Jasione heldreichii - - 2.18 - - 0.37 Triticum sativum – 1.57 - - - - -
Lactuca sativa 0.55 – 1.82 0.30 – 0.91 – 1.20 0.00 Triticum turgidum – 1.60 - - - - -
Lactuca viminea - 0.24 – 0.57 - - – 0.13 Triticum vulgare - - - - – 1.58 -
Leontodon hispidus - - - - – 0.57 - Zea mays – 0.01 - - – 0.55 0.30 -
Picris hieracioides 1.84 1.25 0.64 0.41 0.90 0.37 Liliales Allium ampeloprasum – 0.43 – 1.37 – 0.17 – 0.60 – 0.59 0.76
Senecio erucifolius - - - 0.74 - - Allium cepa – 0.30 – 0.06 – 0.15 – 0.90 – 0.01 1.14
Taraxacum officinale 0.59 - – 0.51 - - 0.90 Allium fistulosum – 0.62 - - - - -
Xeranthemum annuum –0.10 0.28 – 0.92 0.88 – 1.32 0.02 Allium tuberosum – 0.95 - - - - -
Xeranthemum inapertum 0.54 – 0.62 – 0.07 – 0.62 0.30 – 1.41 Asparagus officinalis – 0.61 - - - - -
Mean prior to normalisation 1.94 2.12 2.21 2.06 3.22 3.88
Standard deviation prior to 0.85 0.90 0.84 1.32 1.14 0.68
normalisation
NPH_238.fm Page 13 Wednesday, August 29, 2001 5:13 PM
Research 13
prior to that common ancestor. It is these independent con- Table 2 Percentage of the total sum-of-squares, at each level within
trasts that are then compared to assess whether evolutionary the hierarchically nested ANOVA, for relative shoot concentrations of
six heavy metals
changes impacting on the shoot content of different metals are
correlated. Analyses were performed on the loge-transformed
Cd Cr Cu Ni Pb Zn
means, derived from the REML analyses, and a punctuated
evolutionary model was assumed by setting equal branch Order and above 27.3 23.6 24.0 46.1 20.4 44.5
lengths within the phylogeny (Purvis & Rambaut, 1995). Family 8.7 13.3 22.9 6.3 11.5 4.1
Two approaches were used to test comparative hypotheses. Genus 52.8 51.7 32.9 42.6 61.6 40.9
First, separate null hypotheses of independent evolution were Species 11.2 11.3 20.2 5.0 7.5 10.5
tested for each pair-wise combination of metals. For each No. of studies/ 90 16 27 45 28 35
metal, the independent contrasts, as calculated above, were treatments
No. of species 108 69 64 79 81 70
regressed onto similar contrasts derived for each other metal
in turn (the independent variable). The contrast values for
the independent variable were always calculated to give
positive differences, with those for the dependent variable
calculated using the same algebraic comparison of nodes.
Results
Fitted regression lines were constrained to pass through the
Influence of phylogeny on shoot metal
origin (Harvey & Pagel, 1991), with a fitted slope significantly
accumulation
different from zero indicating a correlation between contrast
values for the two metals. Regressions were performed Hierarchical, nested ANOVA was used to quantify the
twice for each pair of metals, allowing each metal in turn to be variation in relative shoot metal content between the
considered as the independent variable. classification levels of species, genus, family and order (Table 2).
In the second approach the associations between all six Study-to-study variability within species can be estimated
heavy metals were tested simultaneously. Contrasts were from the residual variance in each REML analysis. This is
obtained for the shoot metal contents of 42 plant species expressed as the standard error of the predicted mean (SE)
yielding data for all six metals, with calculations performed for each metal (Appendices 1–6). A small SE indicates a lack
with each metal considered as the independent variable. As of variation and allows confidence in the data used for
the CAIC procedure considers the true phylogeny to bifur- subsequent analyses. The hierarchical ANOVA indicates that
cate, and thus splits daughter taxa of multiple nodes into two phylogeny influences the trait of metal accumulation in
monophyletic groups according to the trait value (Purvis & angiosperms. A large proportion of the variation in shoot
Rambaut, 1995), each metal may define a slightly different Ni (46%) and Zn (45%) content occurred at the level of the
phylogeny, hence a slightly different set of contrasts. A prin- order or above.
cipal components analysis (PCA) was performed on the sets of The mean relative shoot contents of different plant orders
contrasts calculated for each of these six defined phylogenies. for the six heavy metals (Cd, Cr, Cu, Ni, Pb and Zn) are pre-
The PCA summarizes the joint variation between the con- sented in Fig. 1. The widest range of relative shoot Ni con-
trasts for the six metals. The first principal component is the tents between different orders occurred between Brassicales
linear combination of these six variables that accounts for the (high) and Ericales (low) and for Zn between Malvales/Brassi-
greatest proportion of the total variation, with the second cales (high) and Ericales (low). Using the phylogeny of Soltis
principal component being a further linear combination that et al. (1999), it is noteworthy that hyperaccumulation is more
accounts for the greatest proportion of the remaining vari- prevalent in certain orders. For example, Ni hyperaccu-
ation, and so on. The loadings for the six variables on these mulators are prevalent in the Brassicales, Malphigiales and
principal components are the contribution of each to these Asterales (Fig. 1).
linear combinations, and the correlations between the direc-
tions defined by these loadings indicate the degree of associ-
Association between traits, independent
ation between the contrast values for the six metals. Plotting
of phylogeny
the loadings against the first two dimensions provides a visual
impression of this association. Correlations between the The hypotheses that, independent of phylogeny, traits
contrasts for different metals were calculated as cosines of impacting on the Cd, Cr, Cu, Ni, Pb and Zn contents of plant
the mean angles between the loadings, averaged across the shoots are associated were tested by two approaches (pair-wise
configurations produced from the six analyses. To obtain regression and PCA) on data obtained using a CAIC
95% confidence limits for these correlations, the 95% procedure. The null hypothesis that traits are not associated
confidence limits were calculated for the mean angles could be rejected for 21 of the 30 pair-wise regressions of
across the six configurations, and cosines of these limits then contrasts between metals (P < 0.05; Box 1). This implies
calculated. that traits have evolved which impact on the shoot content of
14 Research
Box 1 Significance of pair-wise regressions of contrasts of relative shoot metal concentration. The explanatory metal defines the
phylogeny. Regressions were constrained through the origin to test the null hypotheses of no association between pairs of metals. Values
shown are F-probabilities from the fitted regressions
Response
more than one metal. For example, the evolution of traits correlations between the loadings in these first two
influencing the shoot content of Cr, Cu, Ni, Pb and Zn also dimensions were assumed to estimate the true correlations,
impacts on shoot Cd content, and the evolution of traits the remaining dimensions merely describing noise. The
influencing shoot content of Cd, Cr and Cu impacts on shoot loadings on these first two dimensions are presented
Pb content. graphically for each of the six analyses in Fig. 2. Correla-
The PCA allows the hypothesis that traits impacting on tions between metals, calculated from these loadings, are pre-
heavy metal accumulation in plant shoots are associated to sented in Box 2. These correlations indicate strong positive
be tested for all six metals simultaneously. As the first associations between Ni and Cr, Cu and Cd, Zn and Cd, and
two principal components accounted for between 73% Zn and Cr and a lack of association between Pb and Ni, Cr
and 80% of the variation in each of the six analyses, the or Zn.
Research 15
Box 2 Correlations between contrasts of shoot metal concentration of six heavy metals. Values calculated as cosines of the angles
between the loadings from the six principal components analysis configurations (Fig. 2), with each element in turn defining the
phylogeny. Mean values shown in bold with upper and lower 95% confidence limits
Cr 0.90
0.81
0.69
Cu 0.98 0.79
0.94 0.64
0.90 0.49
Ni 0.78 1.00 0.60
0.65 0.97 0.44
0.49 0.90 0.26
Pb 0.74 0.27 0.92 − 0.12
0.62 0.04 0.80 − 0.19
0.48 − 0.19 0.64 − 0.26
Zn 0.99 0.99 0.94 0.96 0.47
0.92 0.94 0.81 0.88 0.30
0.78 0.82 0.64 0.77 0.11
Cd Cr Cu Ni Pb
16 Research
on the analysis, conclusions must obviously be restricted to of environmental variables was removed by the REML
the remaining phylogeny and no extrapolation of conclusions analysis of loge-transformed data.
to missing branches should be attempted. Another problem By quantifying the influence of phylogeny on shoot metal
occurs where the sampling strategy cannot follow the ‘equal accumulation, the information reported here can be used to
proportions’ approach described above, as was the case in this improve predictions of soil-to-plant metal transfer. For
study. Here, there are three options. The first is to remove example, many soil-to-plant contaminant transfer models rely on
the branch(es) containing too few observations, with the transfer coefficients or transfer factors to relate the concentra-
obvious loss of information. A second approach is to reduce tion of a contaminant in the soil to that in the shoot of a plant
the total number of observations so that the ‘equal proportion’ (Alloway, 1995). Often, data are unavailable for particular
requirement can be satisfied, again with a consequent loss of habitats or species. Since hierarchical, nested ANOVA can
information. The third approach, as adopted in this paper, is to generate explicit intraclass correlations (i.e. trait values for
work with the available data. In this case, the conclusions are species where data are lacking can be predicted from related
only applicable to the observed subset of species. However, species) (Harvey & Pagel, 1991), the data reported here may
hypotheses can be developed from these data which can then be useful in estimating transfer coefficients where experi-
be tested using an appropriate sampling strategy. mental data are unavailable and in improving predictions of rela-
An overall strategy to exploring associations between traits tive soil-to-plant metal transfer in general. The interpretation
within a complex phylogeny could follow a sequential design of an intraclass correlation is the correlation expected between
approach. A first study might concentrate on the associations any two data points (species) selected at random from the
at the level of order or above, collecting a random sample from same group. If sufficient sampling is undertaken, and 52% of
each order, in proportion to the relative number of species in the variation in shoot Ni content in angiosperms is accounted
that order. Results from such a study would identify orders of for by orders plus families within orders, the correlation
interest. Further studies would then concentrate on the asso- between Ni content of randomly chosen species from the
ciations within a particular order, or on a more complete same family will be 0.52. Thus, estimates of the shoot Ni con-
phylogeny but with orders of little interest removed. Further tent of unassayed species could be made from species whose
resolution of any phylogeny would be undertaken at the level content is known.
of family or genus. Eventually, species–environment interac-
tions could be tested within a phylogeny of interest.
Traits have evolved that impact on the shoot
A further uncertainty in the method described here arises
accumulation of several heavy metals
from the combination of studies employing contrasting
experimental conditions and, in particular, the inclusion of Quantifying phylogenetic influences on metal accumulation
studies utilizing plants grown on substrates with contrasting allows hypotheses on the origins of metal-accumulating
metal availability. This assumes that the shoot metal content phenotypes to be investigated. The CAIC analysis, in
of different species respond in the same way to elevated metals combination with pair wise regression of independent
in the environment. However, this assumption may be chal- contrasts (Box 1) and PCA (Fig. 2; Box 2), has tested
lenged. For example, the difference between a metal hyper- whether traits impacting on the shoot content of metals in
accumulator and a nonaccumulator is likely to be greater in plant shoots are associated. Standard pair-wise regression
a high metal environment than in a low metal environment. techniques revealed that, in most comparisons of pairs of
Nevertheless, although the method does not address variation metals, shoot metal contents are correlated. Results obtained
in the responses of species to elevated metals at present, this from PCA, which yielded analyses of associations between
information could be incorporated at a later date. all metals simultaneously, were generally consistent with those
obtained from pair-wise regressions. These results can be
interpreted as indicating that traits have evolved which impact
The predictive utility of partitioning variation in shoot
on the shoot content of more than one metal.
metal content
Notable correlations between certain elements have also
The distribution of variation in shoot metal content (Table 2) been reported for plant samples collected from the field. In
demonstrates a significant phylogenetic influence on this particular, a high correlation between K, Ca and Mg is often
parameter. Similar conclusions were reached by Thompson observed (Garten, 1976; Markert, 1994; Grime et al., 1997;
et al. (1997) for the nutritional elements Ca and Mg, by Thompson et al., 1997). Kinzel (1982), on the basis of field
Broadley et al. (1999) for Cs, and by Jansen et al. (2000) for ecology, postulated the existence of three distinct patterns of
Al. Indeed, the trait of shoot Al content is used as a character cation content: ‘Oxalate plants’ that precipitate Ca as the
trait in plant systematics (Chenery & Sporne, 1976). oxalate, as exemplified by certain families of the Caryophyl-
Thompson et al. (1997) noted that leaf-metal content was lales and Malpighiales; ‘calciotrophes’ that contain high con-
strongly influenced by phylogeny and habitat, which are centrations of free Ca2+, as exemplified by certain families of
themselves highly correlated. In the present study, any effect the Brassicales and Fabales; and ‘potassium plants’ that have
Research 17
a high K : Ca ratio, as exemplified by families in the Apiales upon crop improvement strategies. For example, the Caryo-
and Asterales. phyllales show a general ability to accumulate metals in their
The observation that the shoot contents of most metals shoot. This order includes the families Chenopodiaceae,
(except Pb) are correlated, could result from phylogenetic Polygonaceae and Amaranthaceae, which contain many
influences on a nonspecific physiological trait such as the rapidly growing species. Conversely, crop plants that have low
ratios of organic/inorganic matter or tissue fresh weight/ dry shoot metal content include members of the magnoliids, such
weight. In future analyses it would be worthwhile therefore to as cereals and alliums.
include data relating to potentially unlinked elements such as
N (for dry weight) and K (for fresh weight) to address whether
the appearance of linkage is related to some general phen-
Acknowledgements
omenon, or to a specific, selective transport or sequestration We thank Ian Burns and John Fenlon (HRI), Kathy Fawcett
process. (UWE), Steve Whiting (University of Melbourne) and the
Shoot metal content is determined by root uptake and anonymous referees for their useful comments on earlier
sequestration within root vacuoles, translocation in the xylem manuscripts.
and phloem, and dilution within the shoot through growth.
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Appendix 1
Table A1 Mean relative shoot metal content, sample size and primary references for Cd data
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Table A1 continued
20 Research
Table A1 continued
Appendix 2
Table A2 Mean relative shoot metal content, sample size and primary references for Cr data
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Table A2 continued
Appendix 3
Table A3 Mean relative shoot metal content, sample size and primary references for Cu data
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Table A3 continued
Appendix 4
Table A4 Mean relative shoot metal content, sample size and primary references for Ni data
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Table A4 continued
24 Research
Appendix 5
Table A5 Mean relative shoot metal content, sample size and primary references for Pb data
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Table A5 continued
Appendix 6
Table A6 Mean relative shoot metal content, sample size and primary references for Zn data
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Table A6 continued
Appendix 7
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North Greece in relation to the serpentine problem. Phyton (Austria) 6 Carlson RW & Rolfe GL. 1979. Growth of rye grass and fescue as
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