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Among 767 donor sites, we have used 191 sequences for constructing DL-SSMACA tree and 192 for checking the
accuracy of the tree. The rest of 384 sequences are used for testing.
Among 768 acceptor sites, we have used 192 sequences for constructing DL-SSMACA tree and 192 for checking
the accuracy of the tree. The rest of 384 sequences are used for testing.
Among 1655 neutral sites (neither acceptor/donor), we have used 413 sequences for constructing DL-SSMACA
tree and 414 for checking the accuracy of the tree. The rest of 828 sequences are used for testing. The window
length is fixed as 60.
1
Professor, Department of Computer Science and Engineering, Shri Vishnu Engineering College for Women (Autonomous),
Bhimavaram, Andhra Pradesh, India.
2
Assistant Professor, Department of Computer Science and Engineering, UCEK, Jawaharlal Nehru Technological University,
Kakinada, Andhra Pradesh, India.
Correspondence: Mr. P Kiran Sree, Shri Vishnu Engineering College for Women (Autonomous), Bhimavaram, Andhra Pradesh,
India.
E-mail Id: drkiransree@gmail.com
Orcid Id: http://orcid.org/0000-0001-8601-4304
How to cite this article: Sree PK, Devi SSSNUN. A Robust Gene Finding Classifier for Variable Length DNA Sequences. J Adv Res
Comp Tech Soft Appl 2017; 4 (1&2): 20-23.
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Sree PK et al. J. Adv. Res. Comp. Tech. Soft. Appl. 2017; 4(1&2)
Table 1.
Sequence_human_Kiran_Gene Finding_123jntuh, Human Gene Finding Prediction
Donor Site Prediction
START END SCORE EXON INTRON
24 38 0.99 GACCCAG GT GAGTGG
Donor Site Prediction in Reverse Strand
START END SCORE EXON INTRON
53 39 0.72 AGAAGAG GT AGCGGG
Acceptor Site Prediction
Nil
Acceptor Site Prediction in Reverse Strand
Nil
Input 2 Output
Table 2.
Sequence_human_Kiran_Gene Finding_83jntuh , Human Gene Finding Prediction
Donor Site Prediction
Nil
Donor Site Prediction in Reverse Strand
Nil
Acceptor Site Prediction
START, END, SCORE, INTRON, EXON
10 50 0.95 GCCCTCAGAATCTCCCCACAGGCCGCCTGATCTTTGACAAC
Acceptor Site Prediction in Reverse Strand
Nil
Input 3 Output
Table 3.
Sequence_human_Kiran_Gene Finding_89jntuh , Human Gene Finding Prediction
Donor Site Prediction
Nil
Donor Site Prediction in Reverse Strand
Nil
Acceptor Site Prediction
Nil
Acceptor Site Prediction in Reverse Strand
Nil
22
J. Adv. Res. Comp. Tech. Soft. Appl. 2017; 4(1&2) Sree PK et al.
for strengthening automated protein prediction. cellular automata. Global Journal of Computer
Advances in Biomedical Engineering Research Science and Technology 2013; 13(4).
2013; 1(3): 45-51. 6. Sree PK, Babu IR, Devi NU. Multiple Attractor
2. Sree PK, Babu IR, Devi NU. A Novel Protein Coding Cellular Automata (MACA) for addressing major
Region Identifying Tool using Cellular Automata problems in bioinformatics. Review of
Classifier with Trust-Region Method and Parallel Bioinformatics and Biometrics 2013; 2(3): 70-6.
Scan Algorithm (NPCRITCACA). International 7. Sree PK, Babu IR, Devi NU. Protein coding region
Journal of Biotechnology and Biochemistry 2008; identification. International Conference on
4(2): 177-89. Proteomics Bioinformatics, Embassy Suites Las
3. Sree PK, Babu IR, Devi NU. HMACA: Towards Vegas, USA. Special Issue of Journal of Proteomics
proposing cellular automata based tool for and Bioinformatics 2012; 5(6): 123.
protein coding, promoter region identification 8. Sree PK, Babu IR, Devi NU. Hybrid attractor
and protein structure prediction. International cellular automata for addressing major problems
Journal of Research in Computer Applications and in bioinformatics in research and reviews. Journal
Information Technology 2013; 1(1): 26-31. of Engineering and Technology 2013; 2(4): 42-8.
4. Sree PK, Babu IR, Devi NU. PRMACA: A promoter 9. Sree PK, Babu IR, Devi NU. AIS-PRMACA: artificial
region identification using Multiple Attractor immune system based multiple attractor cellular
Cellular Automata (MACA) in the proceedings CT automata for strengthening PRMACA, Promoter
and critical infrastructure. Advances in Intelligent Region Identification. The Standard International
Systems and Computing 2014; 248: 393-9. Journals 2013; 1(4): 124-7.
5. Sree PK, Babu IR, Devi NU. AIS-PSMACA: Towards 10. Sree PK, Babu IR, Devi NU. A novel AIS-MACAX
proposing an artificial immune system for classifier in bioinformatics. World Congress on
strengthening PSMACA: an automated protein Biotechnology, Valencia Conference Centre,
structure prediction using multiple attractor Valencia, Spain. 2014.
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