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Department of Surgical Oncology, IMS & SUM Hospital
by UNIVERSITY OF NEW ENGLAND on 01/02/18. For personal use only.
ABSTRACT
The paper proposes a modi¯ed approach of delineation and classi¯cation of two di®erent types of liver cancers viz.
Hepatocellular Carcinoma (HCC) and Metastatic Carcinoma (MET) from di®erent slices of computed tomography
(CT) scans images. A combined framework of reorganization and extraction of region of interest (ROI), texture feature
extraction followed by texture classi¯cation by di®erent machine learning approaches has been presented. Initially,
adaptive thresholding has been applied to segment the liver region from CT images. Level set algorithm has been used
for detecting the region of cancer tissues. In the classi¯cation stage, the delineated output lesions have been extracted
with 38 features to build up the dataset. Two machine learning classi¯ers, support vector machine (SVM) and random
forest (RF), have been used to train the dataset for correct prediction of cancer classes. Ten-fold cross-validation has
been used to evaluate the performance of two classi¯ers. The e±ciency of the proposed algorithm is tested in terms
of accuracy, where the RF classi¯er achieved a higher accuracy of 95% compared to SVM classi¯er of 87%.
The experimental result proves the superiority of RF classi¯er compared to SVM classi¯er with level-set features.
Keywords: CT images; Liver tumor; Hepatocellular carcinoma; Metastatic carcinoma; Segmentation; Classi¯er.
§
Corresponding author: Sukanta Sabut, Department of Electronics Engineering, Ramrao Adik Institute of Technology, Navi
Mumbai, India. E-mail: sukanta207@gmail.com
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A. Das, S. S. Panda & S. Sabut
(ANN), support vector machine (SVM) and intelligent local binary pattern histogram Fourier features and
algorithms have been found e®ective in classifying the classi¯ed with SVM and random forest to identify be-
diseases in the decision-making process.3,4 tween hepatocellular carcinoma and metastasis carci-
Gupta et al.5 proposed an e®ective hybrid segmen- noma. The proposed technique was evaluated in 40
tation method based on Gaussian kernel induced fuzzy images in carcinoma a®ected cancer. The e±ciency was
C-means (GKFCM) clustering the object boundaries. evaluated in terms of sensitivity, speci¯city and accu-
Hoogi et al.6 proposed an adaptive level-set segmenta- racy and the obtained results are compared with the
tion technique that improved the dice similarity coe±- published literature data. The rest of the paper is
cient (DSC) by 0:25 0:13% in detecting liver lesions in structured as follows: section Materials and Methods
233 Computed Tomography (CT) and MRI images. includes the materials for the process, Classi¯cation
Vishnuvarthanan et al.7 proposed a hybrid self-orga- section includes di®erent methods applied for the seg-
nizing map with fuzzy k-means (SOMFKM) technique mentation, Results section represents the result and last
for segmenting malignant and benign tumors e±ciently section presents the conclusion of the work.
with high peak signal-to-noise ratio (PSNR) and low
Biomed. Eng. Appl. Basis Commun. 2017.29. Downloaded from www.worldscientific.com
1750047-2
Delineation and Classi¯cation of Liver Cancer
Random Forest
MET
(RF)
by UNIVERSITY OF NEW ENGLAND on 01/02/18. For personal use only.
°ow diagram of the proposed process is illustrated in set Function (LSF) ðX; tÞ, therefore CðtÞ ¼ fxjðCðtÞ;
Fig. 2. The cancerous region was segmented with level tÞ ¼ 0g. As ðCðtÞ; tÞ ¼ 0, taking the derivative of
set and the LBP-HF features are computed from discrete CðtÞ with respect to time t generates the following
Fourier transforms of LBP histograms. In the CT image, equations:
the contrast of the cancerous portion is less compared to
t þ r Ct ¼ t þ r F N ¼ 0
healthy tissues. The original abdominal images consist of ð2Þ
ðX; t ¼ 0Þ ¼ 0 ðXÞ:
liver and some portion of kidney, spleen, etc. Initially,
adaptive thresholding is used to separate the liver from Here, the gradient term rðÞ , ð @ðÞ @ðÞ @ðÞ
@x1 ; @x2 ; . . . ; @xn Þ, and
the abdomen and adaptive thresholding and morpho- 0 ðxÞ are the initial Level set functions represented as
logical operation are used to get the lesion. C0 ðpÞ ¼ fXj0 ðXÞ ¼ 0g. As the inward normal was
represented as N ¼ r=jrj, Eq. (2) is rewritten as
Level Set Algorithm21,22 t ¼ F jrj
ð3Þ
Observe a parametrized closed surface or planner curve ðX; t ¼ 0Þ ¼ 0 ðXÞ:
which is represented by Cðp; tÞ : ½0; 1 Rþ ! Rn . Here,
In the traditional Level set methods, F is de¯ned as
n ¼ 2, 3, accordingly, for planner curve or surface and t
F ¼ k þ F1 , where k ¼ divðr=jrjÞ represents cur-
de¯nes the arti¯cial time that is produced by the
vature. Equation (3) is the Level set equation which is
movement of the curve C0 ðpÞ through its normal direc-
based on the fractional di®erential equation which is
tion N. So, the equation of curve or surface is given in
derived from the geometric factor of motion. The Level
Eq. (1)
set equation of variational LSMs is de¯ned in Eq. (4).
Ct ¼ F N
ð1Þ t ¼ E ðÞ ¼ F ðÞ
Cðp; t ¼ 0Þ ¼ C0 ðP Þ: ð4Þ
ðX; t ¼ 0Þ ¼ 0 ðXÞ:
Here, F represents the force function. The evaluation of
Eq. (1) is solved iteratively by using the Lagrangian Here, E ðÞ represents the gateaux derivative of an
approach. But this iterative solving procedure may not energy function EðÞ, and ðÞ represents the Dirac
handle the topological changes done by moving front, function. The force function F of Eqs. (3) and (4) is
like splitting merging, etc. which is an intrinsic draw- approximated using the upwind scheme. Through the
back of this approach. Another approach, Level set evaluation, the LSF may be too °at or too steep close to
Method, is applied to solve this problem. Accordingly, the zero Level set, which causes a numerical error.
in this approach, the closed moving front is represented Therefore, another re-initialization procedure was
as CðtÞ ¼ X 2 Rn , which is a zero Level set of Level employed to reshape the signed distance function (SDF).
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A. Das, S. S. Panda & S. Sabut
Re-initialization verses without One researcher Xie22 also proposed one level-set di®u-
re-initialization sion rate which is de¯ned as
Many researchers proposed the level set function as r2 ðÞ ¼ H ðjrj 1Þ: ð9Þ
ðXÞ ¼ 1 dist2 ðXÞ. Here, distðÞ is the distance func-
tion and sign represents the inside and outside of the Here, H ðzÞ ¼ ð1=2Þ½1 þ ð2=Þarctanðz=Þ and is a
contour. As re-initialization method computes directly ¯xed parameter.
the SDF in the entire region, it is very much time con- By observing the above three di®usion rates we
suming. So to reduce the computational complexity conclude when jrj 0:5, the di®usion rate restricted
many re-initialization methods were proposed, where the the LSF to be an SDF. Again, when jrj 0:5, the
SDF does not compute directly.24,25 As jrj ¼ 1 is a di®usion rate creates °att LSF, by blocking the rising of
SDF, the following equation of re-initialization was unwanted peaks and valleys. So, the di®erent di®usion
proposed: rate equations are combined with Eq. (4) and produce
the following LSE equations:
t þ Sð0 Þðjrj 1Þ ¼ 0: ð5Þ
Biomed. Eng. Appl. Basis Commun. 2017.29. Downloaded from www.worldscientific.com
t ¼ RegðÞ þ F ðÞ
ð10Þ
In the above equation, ð0 Þ , pffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi
0
, represents the ðX; t ¼ 0Þ ¼ 0 ðXÞ:
by UNIVERSITY OF NEW ENGLAND on 01/02/18. For personal use only.
2 0 þðxÞ
2
initial LSF, and x is the step size. Equation (5) will So, here RegðÞ ¼ divðrðÞrÞ; rðÞ ¼ r1 ðÞ; r2 ðÞ
also be unable to get a desirable ¯nal solution. This or r3 ðÞ, and is a constant term.
problem can be controlled by changing SðÞ into The Dirac function ðÞ can be generated using the
pffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi
ðÞ , =2 þ jrj2 ðxÞ2 . In totality, the re-initiali- following two terms:
zation was su®ering from many problems, like excessive 8
computational cost, it also blocks the rise of new con- <0; z 2 R; jZj >
tours, etc. Therefore, some new methods have been 1; ðzÞ ¼ 1 z ð11Þ
: 1 þ cos ; jzj ;
proposed, where the Level set functions are regularized 2
without the re-initialization procedure.
1
2; ðzÞ ¼ ; z 2 R: ð12Þ
2 þ z 2
Distance regularized level-set evolution As 1; ðzÞ is limited into a zero level set neighborhood,
(DRLSE) LSE can act locally; on the contrary 2; ðzÞ acts on the
all level curves that is why the new contour appears
Li et al.21 proposed a signed distance function (SDF) in automatically.
Eq. (6).
Z
P ðÞ ¼ ðjrj 1Þ2 dx: ð6Þ Rotation Invariant Based Image
Descriptor
The above equation calculates the closeness in-between
This section emphasizes on rotation invariant image
SDF and LSF in the region Rn , where n ¼ 2 or 3 by
features for texture description. As it depends on uni-
the properties of variation, the gradient of P ðÞ is ac-
form local binary pattern, the LBP methodology is ¯rst
quired as
deeply reviewed.
t ¼ P ðÞ ¼ div½r1 ðÞr: ð7Þ
Here, Eq. (7) represents a di®usion equation with a ve- Local binary pattern operator
locity r1 ðÞ ¼ 1 1=jrj. A Local binary pattern (LBP) operator is a simple and
Although r1 ðÞ ! 1 when jrj ! 0, which is the e®ective technique for extracting texture features
reason of oscillation in the ¯eld LSF, so the problem is through an image.23 Generally, the operator labels the
resolved using a new di®usion rate. pixel of an image using thresholding a 3 3 neighbor-
8 hood. Di®erent size of neighborhood can be applied
> sinð2jrjÞ
>
< ; if jrj 1; for this operator. Here, we consider a circular neigh-
2jrj
r2 ðÞ ¼ ð8Þ borhood denoted by (P ; R), where P is the number
>
> 1
:1 ; if jrj 1: of sampling points and R represents the radius of
jrj
the circular neighborhood. Let fðx; yÞ be the center
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Delineation and Classi¯cation of Liver Cancer
10 130 204 0 1 1
Binary:01100010
18 127 102 0 0
Decimal:71
215 78 64 1 0 0
pixel of a neighborhood and the sampling points lie at of 1-bit inside the pattern and r de¯nes the rotation of
coordinates the circular pattern. Currently suppose the neighbor-
hood has P number of sampling points, therefore n
2p 2p
ðxP ; yP Þ ¼ x þ R cos ; y R sin :
Biomed. Eng. Appl. Basis Commun. 2017.29. Downloaded from www.worldscientific.com
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A. Das, S. S. Panda & S. Sabut
Biomed. Eng. Appl. Basis Commun. 2017.29. Downloaded from www.worldscientific.com
by UNIVERSITY OF NEW ENGLAND on 01/02/18. For personal use only.
According to the DFT rules, a cyclic change of the Here, Hðn2 ; uÞ represents the complex conjugate of
input vector can cause a phase change in DFT coe±- Hðn2 ; uÞ.
cient. If h0 ðUp ðn; rÞÞ ¼ hðUP ðn; r aÞÞ then H 0 ðn; uÞ ¼ Any 1 n1 ; n2 P 1 and 0 u P 1 are
Hðn; uÞei2ua=P . represented with Eq. (17)
And hence, with any 1 < n1 ; n2 P 1 the DFT is
LBPu2 HFðn1 ; n2 ; uÞ ¼ Hðn1 ; uÞHðn2 ; uÞ: ð17Þ
presented in Eq. (16)
H 0 ðn1 ; uÞH 0 ðn2 ; uÞ ¼ Hðn1 ; uÞe
i2ua
P H 0 ðn2 ; uÞe
i2ua
P
Here, the generated features are invariant to the cyclic
shift of the rows in hI ðUp ðn; rÞÞ and also invariant to the
¼ Hðn1 ; uÞHðn2 ; uÞ: ð16Þ rotating input image Iðx; yÞ. The Fourier magnitude
spectrum that is represented as LBP histogram Fourier
features (LBP-HF) is the special case of LBP features.
Moreover, the Fourier magnitude spectrum includes
hLBPriu2 features as a subset and is represented in
Eq. (18) as
X
P 1
jHðn; 0Þj ¼ hi ðUP ðn; rÞÞ ¼ hLBPriu2 ðnÞ: ð18Þ
r¼0
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Delineation and Classi¯cation of Liver Cancer
The optimizing function for a SVM classi¯er is presented lected from V set feature. Finally, a best feature is
in Eq. (19) chosen from v to split the node. Throughout the devel-
( ) opment process of forest, the v value does not change.
1 X
min ¼ jjwjj þ C
2
i : ð19Þ Algorithm of RF classifier 31
w;b 2 i
According to the constraints yi ðw x þ bÞ ¼ 1 i and Need: S: Training dataset with N no. of samples,
i 0, w represents a normal vector which separates the S = (x i, y i)
hyper plane in the feature space and a regularization For i = 1, 2, . . . , N and x i ∈ X with class labels
parameter C > 0 is used to control the penalty of mis- y i∈Y
classi¯cation. x: Testing sample
From the Lagrangian Eq. (20), we derive a dual T : Total no. of tree
problem, v: Number of input instances used to construct a
( ) tree.
X 1X
wðÞ ¼ max i y y Kðxi ; xj Þ ; ð20Þ Ensure: Final decision of the classifier.
i
2 i;j i j i j for t ← 1 to T do
S t ← bootstrap samples (S)
subject to 0 i C. This equation represents a
C t ← build Tree Classifier (S t, v t)
quadratic optimization issue which is explained using
end
Sequential Minimal Optimization (SMO). Generally,
Return a decision for x based on majority voting.
most of i go to 0 through optimization and some of the
xi , where i > 0 are known as support vectors.29 For
simplicity of notation, Nx is the total number of vectors
in SVM and i > 0 for all i. So, the normal way to divide RESULTS
the SVM plane w is deliberated in Eq. (21)
The performance of classi¯er mainly depends on various
X
Nx
controlling parameters like ; ; T which are associated
w¼ i yi x i : ð21Þ
with level set methods. In this experiment, the value of
i¼1
parameter is set as 0.1, is set as 5, is set as 2 and
As ðxi Þ is described implicitly, w will exist only in the maximum iteration is set as 100.19 Several images having
feature space. The classi¯cation of unique query vector q hepatocellular carcinoma and metastasis liver cancer are
can be formulated using Eq. (22) of support vector as processed with level set algorithm. The quality of image
given in Eq. (22): is measured with PSNR, MSE values from the output
!
XNx images using the following equations:
fðqÞ ¼ sign i yi Kðq; xi Þ þ b ; ð22Þ 2
i¼1 R
Peak Signal to Noise Ratio ðPSNRÞ ¼ 10 log10 ;
MSE
where b represents the bias of the hyper plane along the
normal vector. ð23Þ
1750047-7
A. Das, S. S. Panda & S. Sabut
Mean Squre Error ðMSEÞ are rows and column. The classi¯cation parameters di-
P rectly depend on the extracted features, which are dif-
M;N ½I1 ðm; nÞ I2 ðm; nÞ
2
¼ : ð24Þ ferent instances of segmented liver images. The features
M N
set is classi¯ed with confusion matrix obtained from the
Here, R is the maximum °uctuation in the input image, classi¯er. Four parameters, i.e. true positive (TP), true
I1 and I2 are the input and segmented images, (M; N) negative (TN), false positive (FP), false negative (FN),
Biomed. Eng. Appl. Basis Commun. 2017.29. Downloaded from www.worldscientific.com
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Fig. 6 (A) original HCC image, (B) segmented liver image, (C) segmented ROI using level set; (D) ¯nal result after morphological operation of
hepatocellular carcinoma.
1750047-8
Delineation and Classi¯cation of Liver Cancer
Fig. 7 (A) original MCC image, (B) segmented liver image, (C) segmented ROI using level set, (D) segmented image after morphological
operation of metastatic carcinoma.
1750047-9
A. Das, S. S. Panda & S. Sabut
Classi¯er/
Folder 2 3 4 5 6 7 8 9 10
SVM 0.91 0.88 0.93 0.88 0.90 0.88 0.90 0.90 0.88
RF 0.95 0.95 0.95 0.94 0.93 0.94 0.95 0.93 0.94
1750047-10
Delineation and Classi¯cation of Liver Cancer
we concluded that the RF classi¯er is better in classi- 4. Ramakrishnan T, Sankaragomathi B, A professional es-
fying HCC and MCC. timate on the computed tomography brain tumor images
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DISCUSSION method based on Gaussian kernel fuzzy clustering
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Subbaraj, Vishnuvarthanan A, An unsupervised learning
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Biomed. Eng. Appl. Basis Commun. 2017.29. Downloaded from www.worldscientific.com
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