Professional Documents
Culture Documents
Bioresource Technology
journal homepage: www.elsevier.com/locate/biortech
a r t i c l e i n f o a b s t r a c t
Article history: In this paper, an original strategy is employed to biosynthesize the isoprene by heterologously co-
Received 13 July 2011 expressing the Saccharomyces cerevisiae MVA pathway and isoprene synthase (IspS) from Populus alba
Received in revised form 10 October 2011 in the Escherichia coli BL21 (DE3) strain, which was screened from three different IspS enzymes. The
Accepted 12 October 2011
finally genetic strain YJM13 harboring the MVA pathway and ispSPa gene could accumulate isoprene
Available online 20 October 2011
up to 2.48 mg/l and 532 mg/l under the flask and fed-batch fermentation conditions, respectively, which
is about three times and five times to the control strain. The result proves to be higher than that in the
Keywords:
report documents. In this way, a potential production system for isoprene from renewable sources via the
Isoprene
MVA pathway
MVA pathway in E. coli has been provided.
Isoprene synthase Ó 2011 Elsevier Ltd. All rights reserved.
Escherichia coli
0960-8524/$ - see front matter Ó 2011 Elsevier Ltd. All rights reserved.
doi:10.1016/j.biortech.2011.10.042
J. Yang et al. / Bioresource Technology 104 (2012) 642–647 643
Fig. 1. Production of isoprene via the DXP or MVA pathways used in this study. Gene symbols and the enzymes they encode (all genes marked with white arrows were
isolated from S. cerevisiae, the gene marked with light gray arrows derived from P. alba and all genes marked with gray arrows were from E. coli). MVA pathway: ERG10,
acetoacetyl-CoA thiolase; ERG13, HMG-CoA synthase; tHMGR, truncated HMG-CoA reductase; ERG12, mevalonate kinase; ERG8, phosphomevalonate kinase; ERG19,
mevalonate pyrophosphate decarboxylase; IDI1, IPP isomerase; ispSPa, P. alba isoprene synthase was optimized to the preferred codon usage of E. coli. MEP pathway: DXS,
DXP synthase; DXR, DXP reductoisomerase; ispD, MEP cytidylyltransferase; ispE: CDP-ME kinase; ispF: ME-2,4cPP synthase; ispG: HMB4PP synthase; ispH: HMB4PP
reductase; idi, IPP isomerase. Pathway intermediates. MVA pathway: A-CoA, acetyl-CoA; AA-CoA, acetoacetyl-CoA; HMG-CoA, hydroxymethylglutaryl-CoA; MeV-P,
mevalonate 5-phosphate; MeV-PP, mevalonate pyrophosphate. IPP, isopentenyl pyrophosphate; DMAPP, dimethylallyl pyrophosphate; MEP pathway: G3P, glyceraldehyde
3-phosphate; DXP, 1-deoxy-D-xylulose 5-phosphate; MEP, 2-C-methyl-D-erythritol 4-phosphate; CDP-ME, 4-diphosphocytidyl-2-C-methyl-D-erythritol; CDP-ME2P,
4-diphosphocytidyl-2-C-methyl-D-erythritol -2-phosphate; ME-2,4cPP, 2-C-methyl-D-erythritol 2,4-cyclopyrophosphate; HMB4PP, 1-hydroxy-2-methyl-2-(E)-butenyl
4-pyrophosphate.
Despite of great efforts taken in isoprene production, this ap- 2.2.1. Cloning of ispS genes from different organisms
proach still remains ineffective due to regulation mechanisms The nucleotide sequences of ispS genes from P. alba (ispSPa, Gen-
present in the native host (Martin et al., 2003). To avoid this native Bank No. AB198180), P. nigra (ispSPn, GenBank No. AM410988), and
control of MEP pathway, this paper gives an attempt to introduce P. alba Populus tremula (ispSPP, GenBank No. AJ294819) were ana-
the Saccharomyces cerevisiae MVA pathway in E. coli expressing lyzed (http://www.genscript.com/cgi-bin/tools/rare_codon_analy-
the codon-optimized ispS gene from Populus alba. This study pro- sis) and optimized to the preferred codon of E. coli (http://
vided an alternative method for isoprene biosynthesis, which will www.jcat.de/) online. The codon-optimized ispS genes (ispSPa,
play an important role in the industrial isoprene production in ispSPn and ispSPp) were synthesized by Genray Company with plas-
the near future. mid pGH as vector (named pGH/ispSPa, pGH/ispSPn, and pGH/ispSPp,
respectively). The plasmid pYJM8 was constructed using PCR frag-
ments containing the ispSPa coding region generated with primers
2. Methods Pa-F (50 -CGCGGATCCAGATGTAGCGTGTCCACCGAA-30 ) and Pa-R
(50 -ACGCGTCGACTTAGCGTTCAAACGGCAGAATC-30 ) and pGH/ispSPa
2.1. Strains, medium and culture conditions as template, which was digested with BamHI and SalI and then li-
gated between the BamHI and SalI sites of pACYCDuet-1. The plas-
E. coli BL21(DE3) and S. cerevisiae were purchased from Invitro- mid pYJM9 was constructed using PCR fragments containing the
gen and ATCC, respectively. The LB medium was used for gene ispSPp coding region generated with primers Pp-F (50 -GGAAGATC
cloning and shake-flask fermentation. In fed-batch fermentation, TGAAGCCAGACGGTCTGCCA-30 ) and Pp-R (50 -CCGCTCGAGTTATCTC
each liter of medium contains glucose 20 g, K2HPO4 9.8 g, beef ex- TCAAAGGGTAGAATAG-30 ) and pGH/ispSPp as template, which was
tract 5 g, ferric ammonium citrate 0.3 g, citric acid monohydrate digested with BglII and XhoI and then ligated between the BglII
2.1 g, MgSO4 0.06 g, 1 ml trace element solution ((NH4)6Mo7O24 and XhoI sites of pACYCDuet-1. The plasmid pYJM10 was con-
4H2O 0.37 g/l, ZnSO47H2O 0.29 g/l, H3BO4 2.47 g/l, CuSO45H2O structed using PCR fragments containing the ispSPn coding region
0.25 g/l, and MnCl24H2O1.58 g/l) and 2% initial glucose was used generated with primers Pn-F (50 -GGAAGATCTGCGACCGAACTGC
for fed-batch culture. If necessary, appropriate antibiotics were TGTGCCT-30 ) and Pn-R (50 -CCGCTCGAGTTAACGTTCGAACGGCAGG
added to the culture medium at the following concentration: ampi- ATC-30 ) and pGH/ispSPn as template, which was digested with BglII
cillin (100 lg/ml), kanamycin (50 lg/ml), and chloramphenicol and XhoI and then ligated between the BglII and XhoI sites of
(34 lg/ml). pACYCDuet-1.
2.2. Plasmid construction 2.2.2. Construction of plasmid for upper pathway of MVA
The plasmid pYJM11 was constructed using PCR fragments con-
Common procedures including genomic DNA preparation, taining the ERG10 coding region generated with primers Erg10-F
restriction digestions, transformations, and other standard molec- (50 -CGCGGATCCATGTCTCAGAACGTTTACATTGT-30 ) and Erg10-R
ular biological techniques were carried out as previously described (50 -ATCGGAGCTCTCATATCTTTTCAATGACAATAG-30 ) and S. cerevisi-
by Sambrook and Russell (2001). Polymerase chain reaction (PCR) ae chromosomal DNA as template, which was digested with BamHI
was performed using Pfu DNA polymerase (TaKaRa, Dalian, China) and SacI and then ligated between the BamHI and SacI sites of
based on the manufacturer’s instruction. pCOLADuet™-1. The plasmid pYJM12 was constructed using PCR
644 J. Yang et al. / Bioresource Technology 104 (2012) 642–647
fragments containing the ERG13 coding region generated with cultures were used to inoculate 250 ml sealed shake-flasks con-
primers Erg13-F (50 -ACGCGTCGACATGAAACTCTCAACTAAACTTT taining 50 ml of LB broth and grew at 37 °C with shaking until
G-30 ) and Erg13-R (50 -CCCAAGCTTTTATTTTTTAACATCGTAAGAT the cultures reached an OD600 of 0.6. IPTG was added to final con-
C-30 ) and S. cerevisiae chromosomal DNA as template, which was centration of 0.5 mM, and culture was further incubated at 30 °C
digested with SalI and HindIII and then ligated between the SalI for 24 h. 1 ml of gas sample from the headspace of the sealed cul-
and HindIII sites of pYJM11. The PCR fragments containing the tures was analyzed as described earlier (Julsing et al., 2007) using a
tHMGR coding region generated with primers GR-F (50 -CCGCGGC GC (Agilent 7890A, America) equipped with a flame ionization
CGGCCATGGACCAATTGGTGAAAACTGA-30 ) and GR-R (50 -CCGGAC detector (FID) and a HP-AL/S column (25 m 320 lm 8 lm).
GTCTTAGGATTTAATGCAGGTGACGGA-30 ) and S. cerevisiae chromo- The product was characterized by direct comparison with standard
somal DNA as template, was digested with FseI and AatII and then isoprene (TCI-EP, Tokyo, Japan). The peak area was converted to
ligated with pJYM12 digested with the same enzymes to create isoprene concentration by comparing with a standard curve plot-
pYJM13. ted with a set of known concentration of isoprene.
Table 1
Isoprene production by different strains with or without MVA under flask conditions.
The experiment was done in triplicate.
Acknowledgements
References
Alianell, G.A., Derwitsch, F., Wells, D., Taylor, T., 2010. Isoprene compositions and
methods of use. US2010/0099932 A1.
Anhorn, V.J., Frech, K.J., Schaffel, G.S., Brown, D., 1961. Isoprene from propylene.
Fig. 4. Comparison of isoprene production from native MEP and heterologous MVA Chem. Eng. Prog. 57, 43–45.
pathway. (A) Isoprene production of engineered E. coli under flask conditions. (B) De Malde, M., 1963. New industrial process for isoprene. Chim. Ind. (Milan) 45,
Isoprene production of engineered E. coli. The batch fermentation was performed 665–673.
under the conditions described in Section 2.6. The experiment was performed in DiGiacomo, A.A., Maerker, J.B., Schall, J.W., 1961. Isoprene by dehydrogenation.
triplicate. Chem. Eng. Prog. 57, 3540.
J. Yang et al. / Bioresource Technology 104 (2012) 642–647 647
Eroglu, E., Melis, A., 2010. Extracellular terpenoid hydrocarbon extraction and Reis, T., 1972. Isoprene production 2. Synthesis based on isobutylene. Chem.
quantitation from the green microalgae Botryococcus braunii var. Showa. Process. Eng. 53, 68–71.
Bioresour. Technol. 101, 2359–2366. Ro, D.K., Paradise, E.M., Ouellet, M., Fisher, K.J., Newman, K.L., Ndungu, J.M., Ho, K.A.,
Farmer, W.R., Liao, J.C., 2001. Precursor balancing for metabolic engineering of Eachus, R.A., Ham, T.S., Kirby, J., 2006. Production of the antimalarial drug
lycopene production in Escherichia coli. Biotechnol. Prog. 17, 57–61. precursor artemisinic acid in engineered yeast. Nature 440, 940–943.
Glazyrina, J., Materne, E.M., Dreher, T., Storm, D., 2010. High cell density cultivation Rodriguez-Concepcion, M., Boronat, A., 2002. Elucidation of the methylerythritol
and recombinant protein production with Escherichia coli in a rocking-motion- phosphate pathway for isoprenoid biosynthesis in bacteria and plastids. A
type bioreactor. Microb. Cell. Fact. 9, 42–52. metabolic milestone achieved through genomics. Plant Physiol. 130, 1079.
Julsing, M.K., Rijpkema, M., Woerdenbag, H.J., Quax, W.J., Kayser, O., 2007. Sambrook, J., Russell, D.W., 2001. Molecular Cloning: A Laboratory Manual, third
Functional analysis of genes involved in the biosynthesis of isoprene in ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
Bacillus subtilis. Appl. Microbiol. Biotechnol. 75, 1377–1384. Sasaki, K., Ohara, K., Yazaki, K., 2005. Gene expression and characterization of
Kesselmeier, J., Staudt, M., 1999. Biogenic volatile organic compounds (VOC): An isoprene synthase from Populus alba. FEBS Lett. 579, 2514–2518.
overview on emission, physiology and ecology. J. Atmos. Chem. 33, 23–88. Sharkey, T.D., 2009. The future of isoprene research. Bull. Georg. Natl. Acad. Sci. 3,
Kim, S.W., Keasling, J.D., 2001. Metabolic engineering of the nonmevalonate 106–113.
isopentenyl diphosphate synthesis pathway in Escherichia coli enhances Steinbuchel, A., 2003. Production of rubber-like polymers by microorganisms. Curr.
lycopene production. Biotechnol. Bioeng. 72, 408–415. Opin. Microbiol. 6, 261–270.
Kuzuyama, T., 2002. Mevalonate and nonmevalonate pathways for the biosynthesis Tanaka, Y., Sakdapipanich, J.T., 2001. Chemical structure and occurrence of natural
of isoprene units. Biosci. Biotechnol. Biochem. 66, 1619–1627. polyisoprenes. In: Biopolymers – Biology, Chemistry, Biotechnology,
Lehning, A., Zimmer, I., Steinbrecher, R., Brüggemann, N., Schnitzler, J.P., 1999. Applications, first ed., Polyisoprenoids, vol. 2, pp. 1–25.
Isoprene synthase activity and its relation to isoprene emission in Quercus robur Ushio, S., 1972. Extract isoprene with DMF. Chem. Eng. Prog. 79, 82–83.
L. leaves. Plant Cell Environ. 22, 495–504. Xue, J.F., Ahring, B.K., 2011. Enhancing isoprene production by genetic modification
Lindberg, P., Park, S., Melis, A., 2010. Engineering a platform for photosynthetic of the DXP pathway in Bacillus subtilis. Appl. Environ. Microbiol. 77, 2399–2405.
isoprene production in cyanobacteria, using Synechocystis as the model Yoon, S.H., Lee, S.H., Das, A., Ryu, H.K., Jang, H.J., Kim, J.Y., Oh, D.K., Keasling, J.D.,
organism. Metab. Eng. 12, 70–79. Kim, S.W., 2009. Combinatorial expression of bacterial whole mevalonate
Martin, V.J.J., Pitera, D.J., Withers, S.T., Newman, J.D., Keasling, J.D., 2003. pathway for the production of [beta]-carotene in E. coli. J. Biotechnol. 140, 218–
Engineering a mevalonate pathway in Escherichia coli for production of 226.
terpenoids. Nat. Biotechnol. 21, 796–802. Zhao, Y., Yang, J., Qin, B., Li, Y., Sun, Y., Su, S., Xian, M., 2011. Biosynthesis of isoprene
Mooibroek, H., Cornish, K., 2000. Alternative sources of natural rubber. Appl. in Escherichia coli via methylerythritol phosphate (MEP) pathway. Appl.
Microbiol. Biotechnol. 53, 355–365. Microbiol. Biotechnol. 1–8.
Pfleger, B.F., Pitera, D.J., Newman, J.D., Martin, V.J.J., Keasling, J.D., 2007. Microbial
sensors for small molecules: development of a mevalonate biosensor. Metab.
Eng. 9, 30–38.