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Chromatography
Guide
Contents
4 Mobile phase . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 46
4.1 General . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 46
4.2 Solvent strength and selectivity . . . . . . . . . . . . . . . . . . . . . 47
4.3 Purity . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 49
4.4 Solvents for normal phase chromatography . . . . . . . . . . . 49
4.5 Solvents for reversed phase chromatography . . . . . . . . . . 50
4.6 Solvents for gel chromatography . . . . . . . . . . . . . . . . . . . 51
5 Deactivators . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 53
6 Detection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 54
6.1 UV detector . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 54
6.2 Refractive index detector . . . . . . . . . . . . . . . . . . . . . . . . . 55
6.3 Conductivity detector . . . . . . . . . . . . . . . . . . . . . . . . . . . . 56
7 Characterizing a column . . . . . . . . . . . . . . . . . . . . . . . 58
7.1 The chromatogram . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 58
7.2 Symmetry index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 59
7.3 Number of theoretical plates . . . . . . . . . . . . . . . . . . . . . . . 60
7.4 Height equivalent to a theoretical plate . . . . . . . . . . . . . . . 61
7.5 Reduced plate height . . . . . . . . . . . . . . . . . . . . . . . . . . . . 62
7.6 Resolution . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 62
7.7 Dead volume . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 63
Contents
1
12 Part 1 Flash Guide – Basics Introduction 13
1 Introduction
The following abbreviations are used in the first part:
Chromatography is a standard method used in preparative labora-
tories to isolate and purify substances. In the early days of chro- TLC Thin-layer chromatography
matography simple glass columns were chiefly used, operated by RP Reversed phase, modified silica gels
means of the hydrostatic pressure of the solvent acting as an elu- NP Normal phase polar silica gel phases
ent. In a publication in 1978 Clark W. Still explored the possibility UV Ultraviolet
of accelerating the separation process in simple glass columns, Si Solvent strength (substitutes polarity)
which was until then the commonly used method, and thereby %A % solvent with low solvent strength
considerably increasing the efficiency of the technique. The results %B % solvent with high solvent strength
were convincing and the foundations of modern flash chromato- Rf Retention factor (from thin-layer chromatograms)
graphy were laid. It triumphantly established itself in laboratories CV Column volumes
as an indispensable purification method in preparative chemistry. ∆CV Difference in column volumes
Flash chromatography has since undergone constant develop- Rf1 Retention factor of first substance (substance which
ment, and has been adapted to meet present day expectations in spreads onto the TLC plate the quickest. The index
terms of equipment and convenience. increases according to the time the substance takes to
spread).
Figure 1:
From the simple glass
column to modern
flash chromatography.
Chromatographic separation is based on a balanced state among Chromatographic separation can be carried out on both polar and
the components to be separated, an adsorbent agent in the col- apolar stationary phases, and suitable sorbents are available from
umn (= stationary phase) and a solvent flowing through it (mobile various manufacturers.
phase). When a component settles on the stationary phase this is “Standard” chromatography requires the use of polar stationary
defined as adsorption, while detachment by the mobile phase is phases such as silica gel and nonpolar solvents. The individual
defined as desorption. A high adsorption capacity between the components are delayed as a result of a reaction between the po-
components of interest and the stationary phase means that there lar function component groups and the polar groups of the sor-
is a high retention of these components and that there is a consid- bent. Low polarity substances are eluted first, followed by compo-
erable delay in elution from the column. The separation of a mixture nents of increasing size.
into its individual components is only possible if the individual com- In “reversed phase” chromatography, however, the stationary
ponents in a combination of stationary and mobile phases have dif- phase is nonpolar and elution is by means of polar solvents. These
ferent adsorption/desorption properties. stationary phases are produced by modifying silica gel with non-
polar groups such as C-18 or similar substances. Substances
Figure 2:
Adsorption und are eluted in order of decreasing polarity from reversed phase
Desorption, schematic columns, i.e. the substance with the highest polarity appears first.
illustration of the Reversed phase materials are considerably more expensive than
chromatographic
separation process.
standard stationary phases, and this is one of the reasons why
standard stationary phases are primarily used in flash chromato-
graphy. If the substance classes to be separated allow, modified
stationary phases can nonetheless be used without restrictions or
problems.
Figure 3:
Elution sequence for
normal silica gel.
Preparative Column
Chromatography
Theory and Practice
2
32 Part 2 Preparative Column Chromatography – Theory and Practice Starting point – Definition of the problem 33
1 Starting point – Definition of the problem tions may readily lead to sufficient purification without needing too
much concern.
The properties of the sample and the use of the purified com-
pounds dictate the purification procedure to follow. Therefore, any 1.3 Others
separation should be carefully planned and targets clearly set be- Other logistical factors will also influence the procedure parame-
fore starting to avoid basic pitfalls and to make best use of avail- ters when there is a choice between different conditions. Such fac-
able resources for an optimized purification. tors are: time required (to maximize the throughput); difficulty of the
procedure; cost; safety (solvents); procedure frequency and sys-
1.1 Sample tem capacity.
Several characteristics of a sample must be considered before The safety concerns are not to be neglected. The hazard usually
attempting a purification. The most important one is the sample’s comes from the solvent used and from the sample. Since the use
solubility. It must be ensured that the sample is completely soluble of large amounts of solvent can sometimes not be avoided with
in the mobile phase; otherwise it will aggregate onto the column preparative-scale chromatography, the quantities also play a signif-
adsorbing material and make any purification attempts useless. icant role when assessing the solvent’s toxicity, not only its intrinsic
toxicity. Careful consideration of the hazardous materials contained
Other major features must also be considered, such as the in the residue should be given before throwing any sample into the
– origin (synthetic reaction mixture, biological crude extract) waste disposal.
– composition (known or unknown) The system capacity and the quantities to be processed must
– matrix (chemical and physical properties) also be taken into account to limit the costs of the procedure.
– phase (gas, liquid or solid)
– concentration of the substance of interest (trace amounts, one
or more major components)
1.2 Purity
The purity of a sample is limited by the ability to detect impurities
therein or a lower activity thereof by available analytical means.
The required purity and the constraints of the further processing
of the isolated compound(s) govern the conditions under which the
chromatographic separation will be carried out. When purifying a
substance to be used as a reference standard or as a drug to be
tested on animals, the purity must be in excess of 99%. Usually,
the higher the purity to be achieved, the closer the separation pro-
file should be followed and the more carefully the procedure should
be carried out. In the ideal case, some chromatographic separa-
34 Part 2 Preparative Column Chromatography – Theory and Practice Fundamentals – The basic principles 35
Equation 44:
Resolution (base-line
Number of theoretical plates width).
Equation 42:
Number of theoretical
plates (base-line Equation 45:
width). tR = Net retention time Resolution (peak width
w = Base-line width
at half height).
b0.5 = Peak width at half height
Equation 43: All values in mm, min or sec
Number of theoretical tR = Retention time (always use the same units)
w = Base-line width
plates (peak width at
b0.5 = Peak width at half height
half height). All values in mm, min or sec Figure 57:
(always use the same units) Resolution.
Figure 56:
Number of theoretical
plates.
112 Appendix Common formulae 113
Equation 47:
Net retention time. t’R = Net retention time Figure 59:
tR = Total retention time HETP.
t0 = Dead time
Figure 58:
Net retention time.
Equation 49:
Peak symmetry.
Figure 60:
Peak symmetry.
126 Appendix Index 127