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MINERALOGY
Mineralogy is the study of minerals. Minerals1 are crystalline materials.
II.1 INTRODUCTION
“A mineral is defined as a naturally occurring homogeneous solid substance with
definite (but generally not fixed) chemical composition and a highly ordered atomic
arrangement. It is usually formed by inorganic processes2.”
Naturally Occurring : means it forms by itself in nature. Human made minerals are
referred to as synthetic minerals.
Homogeneous : means that it is a compound that contains the same chemical
composition throughout, and cannot by physically separated into more than 1 chemical
compound.
Solid: means that it not a gas, liquid, or plasma.
Definite chemical composition: means that the chemical composition can be
expressed by a chemical formula. A wide range of substitutions of one ion for another is
possible as long as a precise formula fitting the general formula of the mineral species
can be written. Examples: Quartz has the chemical formula SiO2. Whenever we find
quartz it consists of Si and O in a ratio of 1 Si to 2 O atoms.
Olivine is an example of a mineral that does not have a fixed chemical composition. In
nature we find that Mg and Fe atoms have the same size and charge and therefore can
easily substitute for one another in a mineral. Thus, olivine can have the chemical
formula Mg2SiO4 or Fe2SiO4 or anything in between. This is usually expressed with a
formula indicating the possible substitution - (Mg,Fe)2SiO4.
Highly ordered atomic arrangement: means that the atoms in a mineral are arranged
in an ordered geometric pattern. This ordered arrangement of atoms is called a crystal
structure, and thus all minerals are crystals. For each mineral has a crystal structure
that will always be found for that mineral, i.e. every crystal of quartz will have the same
ordered internal arrangement of atoms. If the crystal structure is different, then we give
the mineral a different name. A solid compound that meets the other criteria, but has not
definite crystal structure is a said to be amorphous.
Minerals are most commonly classified on the basis of the presence of a major chemical
component (an anion or anionic complex) into oxides, sulfides, silicates, carbonates,
phosphates, and so forth.
The careful description and identification of minerals often require highly specialized
techniques such as chemical analysis and measurement of physical properties, among
which are the specific gravity, optical properties, and X-ray parameters that relate to the
atomic structure of the minerals3.
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Class Notes on Crystallography & Mineralogy Salah Shata
source of lead), sphalerite ( ZnS, zinc), chalcopyrite (CuFeS2, copper), Hematite (Fe2O3,
iron)
Some Minerals are used in Industry and Construction e.g. (Gypsum in “dry wall”,
Diamond in drill bits and abrasives, Phosphates for fertilizer, Asbestos for insulation, fire
proofing, strength, Ilmenite or Paint pigments..etc
Minerals are used in Food (salt) , Household & Cosmetics: (Sparkles in toothpaste, nail
polish-micas; Foot powder, baby powder – talc, and Face powders – clays).
Example: K (potassium) has 19 protons. Every atom of K has 19 protons. The Atomic
number of K=19. Some atoms of K have 20 neutrons, others have 21, and others have
22. Thus mass number of K can be 39, 40, or 41. 40K is radioactive and decays to 40Ar
and 40Ca.
It is the electrons in the atoms that are responsible for the chemical properties of atoms.
The electronic configuration determines the types of atoms that can be bound to one
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Class Notes on Crystallography & Mineralogy Salah Shata
another, the strength of the bonds, and the types of bonds. Thus, we need to look
closely at the electrons and the electronic configuration of atoms. The electronic
configuration determines the types of atoms that can be bound to one another, the
strength of the bonds, and the types of bonds. Thus, we need to look closely at the
electrons and the electronic configuration of atoms.
Planck found that the energy released in the electronic transitions is only released in
distinct packets, which he called "quanta", and that these packets of energy are related
to a constant (now called Planck's constant, and the frequency or wavelength of the
radiation released.
E = hν = hc/λ where
E = energy
h = Planck's constant, 6.62517 x 10-27 erg.sec
ν = frequency, c = velocity of light = 2.99793 x 1010
cm/sec, λ = wavelength
This led to the quantum mechanical view of the
atom.
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Class Notes on Crystallography & Mineralogy Salah Shata
are placed at the bottom of the chart. The series from La to Lu is known as the
Lanthanides and these elements are also commonly called the Rare Earth Elements.
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Class Notes on Crystallography & Mineralogy Salah Shata
The Noble gases all have very high first ionization potentials, indicating that their
electronic structure is stable. A glance at the periodic table showing filling shells (above)
indicates that the Noble Gases all have in common completely filled p - orbitals. It is
because these sub-orbital shells are full that these elements do not readily become ions
and do not easily combine with other elements to become compounds.
Elements in Group I (the alkalies), on the other hand have very low first ionization
potentials, and thus it is relatively easy to remove one electron. Since all of these
elements have in common an outermost shell containing 1 electron in the s - orbital,
these elements tend to become +1 ions (i.e. Li+1, Na+1, K+1, Rb+1, Cs+1, etc.) Note that
removal of this electron will leave the atoms with an electronic configuration of the Noble
gases, i.e. they will have completely filled outermost electron shells.
Second ionization potentials (the energy required to remove a second electron) is also
very high for these elements, again indicating that once they become +1 ions they have
a stable electronic configuration.
Elements in Group II (the alkaline earths) also have relatively low first ionization
potentials and have relatively low second ionization potentials. Thus, these elements
tend to lose 2 electrons to become +2 ions (i.e. Be+2, Mg+2, Ca+2, Sr+2, Ba+2, etc.) Once
they have lost these two electrons they also have an electronic configuration with
completely filled outer electron shells, similar to the Noble Gases.
Elements in Group VII (the halogens) have very high first ionization potentials. They
don't like to give up electrons. But note that if they gain an electron to become a -1 ion,
they will also have completely filled outer electron shells similar to the Noble gases.
Thus these elements tend to gain electrons to become -1 ions (i.e. F-1, Cl-1, Br-1, etc.).
Based on similar reasoning, Group III elements tend to lose 3 electrons to become +3
ions (i.e. B+3, Al+3, Ga+3, etc.). Group IV elements tend to lose 4 electrons to become +4
ions (i.e. C+4, Si+4, Ge+4). But Pb, usually only loses 2 electrons to become Pb+2.
Elements in Group V tend to lose 5 electrons to become +5 ions (N+5, P+5, As+5).
Group VI tend to gain electrons to become -2 ions (i.e. O-2, S-2, Se-2), but sulfur
sometimes loses 6 electrons to become S+6.
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Class Notes on Crystallography & Mineralogy Salah Shata
The transition elements all have d-orbital electrons in their outermost shells, and
because they have low to high first ionization potentials their behavior is somewhat
variable. The elements in the third column tend to become +3 ions (Sc+3, Y+3, La+3 ),
those in the 4th column tend to become +4 ions (Ti+4, Zr+4, Hf+4), and those in the 5th
column tend to become +5 ions (V+5, Nb+5, Ta+5). But the 5th through 11th column show
variable ions. For example, Cr is usually Cr+3, Mn can be usually Mn+2, Mn+3, or Mn+4, Fe
can be either Fe+2 (ferrous iron) or Fe+3 (ferric iron), Ni, Co, and Zn become +2 ions, and
Cu can be either Cu+1or Cu+2.
The rare earth elements tend to become +3 ions, with the exception of Eu, which can be
either Eu+2, or Eu+3. The actinides U and Th tend to become +4 ions.
Electronegativity
Another way of looking at the tendency to gain or lose electrons is based on the
electronegativity. Electronegativity is defined as the ability of an atom in a crystal
structure or molecule to attract electrons into its outer shell. Elements with low values of
electronegativity are electron donors, and those with high values are electron acceptors
(Fig. 32). The Noble gases have electronegativity values of zero, because they neither
accept or donate electrons. As we will see in our later discussion, electronegativity
difference between atoms plays an important role in determining they type of chemical
bond that forms between elements.
Bonding types (Caution: most minerals have more than one type of bond!)
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Class Notes on Crystallography & Mineralogy Salah Shata
a) ionic: loss (by metal) vs. gain (by nonmetal) of electrons to achieve electronic
configuration of a noble gas. Once a cation-anion pair exists, it is held together by the
overall opposite charge of the ions.
The degree of ionic character of a bond is a function of the electronegativity difference
among the two ions. Bond strength related to ionic charges (qA, qB) and inversely to
bond length (r=rA+rB), because attractive forces are proportional to qA*qB/r2. Bonds
usually non-directional (charge evenly spread around each ion). Ions pack as spheres,
often in structures with high symmetry.
Ionic bonds are more water soluble than the covalent bonds.
c) metallic: valence electrons are weakly held by individual atoms and drift throughout
the entire structure. Energy levels of close neighbors spread out into valence and
conducting "bands". Bond distance is greater than the sum of ionic radii. Bonds are non-
directional, structures have high symmetry.
Metallic solids have a distinctive luster, are opaque, show good conductivity, malleability
& ductility (drawn into wire & sheets).
d) van der Waals: weak bond that ties "neutral" structural units into a cohesive structure
by the small residual charges on their surface. e.g. sheets of C in graphite.
e) hydrogen: the lone proton (H+) of an OH- group can form a weak bond with
neighbouring anions (usually O2-) or the negatively charged atoms of polar molecules
(e.g. H2O). Ice is the best example (isn't it a mineral?…)
Polarization: distortion of the shape of electronic cloud from a larger anion by a nearby
cation. The bonding becomes less ionic and more covalent or metallic.
More than one type of bond may occur in a single compound; such substances are
termed heterodesmic, and those in which only one bond type is present homodesmic.
In heterodesmic structures the physical properties, such as hardness, mechanical
strength, and melting point, are in general determined by the weakest bonds, which are
the first to suffer disruption under increasing mechanical or thermal strain.
The arrangement of atoms in a crystal structure not only depends on the charge on the
ion and type of bonding between atoms, but also on the size of the atoms or ions. In any
given molecule or crystal structure each atom or ion will be surrounded by other atoms
or ions. The number of ions or atoms that immediately surround an atom or ion of
interest is called the coordination number, - C.N.
As we shall see, the coordination number depends on the relative size of the atoms or
ions. So, we must first discuss their sizes.
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Class Notes on Crystallography & Mineralogy Salah Shata
with smaller numbers of electrons. Thus ions will have radii different from the atoms
because ions will have either gained or lost electrons. The number of positive charges in
the nucleus determines both the number of electrons that surround an atom and the
number of electrons that can be lost or gained to form ions. Thus, as the charge on the
ion becomes more positive, there will be less electrons and the ion will have a smaller
radius.
As the charge on the ion becomes more negative, there will be more electrons and the
ion will have a larger radius.
As the atomic number increases in any given column of the Periodic Table, the number
of protons and electrons increases and thus the size of the atom or ion increases.
Atomic and ionic radii also depend on the type of bonding that takes place between the
constituents, and on the coordination number. Thus, atomic and ionic radii will vary
somewhat as a function of the environment in which the atoms or ions are found. First,
let's examine the table looking at one column of the Periodic Table (Table 1a) to see
how the radii are affected by increasing atomic number. Here we see the effect of
increasing the atomic number (and total number of electrons) for ions of equal charge
and the effect of changing the coordination number. The radii increase with increasing
total number of electrons downward in table. Ionic radius also increases with increasing
coordination number, the electron cloud is drawn out by the presence of more
surrounding ions.
Next, we examine one row of the Periodic Table (Table 1-b) to see how the radii are
affected by charge of the ion. Here we see that as the charge becomes more positive
the radius of the cation decreases. This is because there are fewer electrons in the outer
shells of the ions. The sizes of anions are relatively large because there are more
electrons in their outermost shells.
Table 1. The effect of cation charge and coordination number of ionic radius
(a) (b)
Coordination of Ions
In an ionic structure, each ion tends to surround itself with ions of opposite charge;
the number that can be grouped around the central ion depends upon the radius ratio
between the two. The coordinated ions always cluster about the central coordinating ion,
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Class Notes on Crystallography & Mineralogy Salah Shata
in such a way that their centers lie at the apices of a polyhedron, (Fig.1). Thus, in a
stable crystal structure, each cation lies at the approximate center of a coordination
Figure 33. Planar representation of the relationship between the radius ratio and coordinates number.
Coordination also called "cubic" (C.N. 8), "octahedral" (C.N. 6), "tetrahedral" (C.N. 4), "
Triangular Coordination " (C.N. 3) and linear (C.N. 2)
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The term coordination simply refers to the number of anions surrounding a cation in a mineral structure.
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Class Notes on Crystallography & Mineralogy Salah Shata
Fig. 35 different types of coordination polyhedra are determined by the radius ratio, Rx/Rz
The table here summarizes the cation to anion radius ratios, Rx/Rz, for various
coordination numbers and gives the name of the coordination polyhedron for each
coordination number.
Table (2) Relationship between radius ratio and coordination number for ions as rigid spheres.
Radius Ratio Arrangement of Anions Coordination
(Rcation/Ranion) around Cations Number of Cations
<0.155 Linear 2
0.155-0.225 Corners of an equilateral triangle (Triangular Coordination). 3
0.225-0.414 Corners of a tetrahedron (Tetrahedral Coordination) 4
0.414-0.732 Corners of an octahedron (Octahedral Coordination) 6
0.732-1.00 Corners of a cube (Cubic Coordination) 8
>1.00 Corners of a Cuboctahedron (Hexagonal or cubic Closest 12
Packing)
Pauling's Rules
Given the Earth's crust composition, where O2- is the main anion, most minerals can be
considered dominantly ionic compounds. Linus Pauling studied crystal structures and
the types of bonding and coordination that occurs within them. His studies found that
crystal structures obey the following rules, now known as Pauling's Rules.
1. "No rattle" rule: a coordination polyhedron of anions forms around each cation.
- the coordination number (C.N.) is the number of nearest neighbour ions/atoms
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Class Notes on Crystallography & Mineralogy Salah Shata
Figure 36. In ionic crystals, the cation-anion distance is equal to the sum of their radii
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Class Notes on Crystallography & Mineralogy Salah Shata
This is not the case for C+4 ion in triangular coordination with O-2. Here, e.v. = 4/3 (C has
a charge of +4 and is coordinated by 3 oxygens). Thus,
the 3 Oxygens each contribute 4/3 charge to the Carbon
ion (Fig. 38), and the charge on the carbon is balanced.
But, each Oxygen still has 2/3 of a charge that it has not
used. In cases like this, where the electrostatic valency is
greater than 1/2 the charge on the anion (4/3 > 1/2*2), the
anion will be more strongly bound to the central
coordinating cation than it can be bonded to other
structural groups. When this occurs the bonding is said to
be anisodesmic.
3. The sharing of edges and (even more so) of faces among coordination polyhedra
decreases their stability because of cation-cation repulsion (Fig. 38). Sharing is easiest
for large polyhedra (cations of low valency and large coordination number), difficult for
smaller polyhedra.
E.g., at the Earth's surface temperature and pressure, the SiO4 tetrahedra only share
corners in quartz (SiO2). In the high-pressure SiO2 polymorph stishovite (found at
meteoritic impact sites), SiO6 octahedra share edges.
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Class Notes on Crystallography & Mineralogy Salah Shata
Figure 39. In ionic crystals, if the distance (cc) between the cations in the polyhedrons
that share corners is taken as 1, then sharing edges reduces the distance to 0.58, and
sharing of faces reduces the distance to 0.38.
5. Principle of parsimony. There are only a few types of contrasting cation and
anion sites in any crystalline structure (Fig. 40).
Figure 40. The structure of amphibole (although amphibole comprises 14 different ions,
yet there are only five site available to accommodate these ions.
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