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Predictive microbiology
Paw Dalgaard
Microbiology group
Danish Institute for Fisheries Research (DIFRES)
Dept. of Seafood Research (FF)
DTU, Lyngby building 221
www.dfu.min.dk/micro/pd.htm
pad@dfu.min.dk
DFU, Lyngby FF
DFU, Lyngby FF
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Predictive microbiology – course 27755 / 076018
Relation to other courses include predictive microbiology
• Levnedsmiddelmikrobiologi (071213):
• Koncept og oversigt over tilgængelige modeller og software
(MicroFit, ComBase, Growth Predictor, PMP, SSSP)
Legan, D., Vandeven, M., Stewart, C., Cole, M. (2002). Modelling the
growth, survival and death of bacterial pathogens in foods. (Chapter 3)
In: Foodborne pathogens. Blackburn, C. de W. and McClure, P.J. (eds.).
Woodhead Publishing Ltd. pp. 53-95.
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Predictive microbiology – the concept
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5
4
3
2
Lag time
1
0
Storage time
3
Development of predictive microbial models
Data generation : Growth curves are generated in model systems for combi-
nations of environmental factors (temp., pH, NaCl, etc.)
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6
Exponential model
5
Logistic model without lag
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3 Logistic model with lag
2 Baranyi & Roberts (1994)
1
0
0 50 100 150 200 250 300 350 400 450
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Secondary predictive microbiology growth models
Kinetic models
• Polynomial and constrained linear polynomial models
• Square-root-type models
• Cardinal parameter models
• Artificial neural networks
Growth/no growth interface models
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Evaluation of Listeria monocytogenes growth models – seafood example
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Application of predictive microbiology in QMRA
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Predictive microbiology freeware applications
• Pathogen Modeling Programme (USA) - www.arserrc.gov/mfs/pathogen.htm
• 37 models of growth, survival and inactivation
• Frequently updated (version 7.0)
• Available free of charge during the last 15 years
• ~ 5000 downloads per year
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Predictiv microbiology – course 27751 / 076018
(Predicting shelf-life and safety of foods)
DFU, Lyngby FF
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Primary growth models
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Exponential model
6
5 Logistic model without lag
4 Logistic model with lag
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Baranyi & Roberts (1994)
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Modified Gompertz model
1
0
0 50 100 150 200 250 300 350 400 450
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Primary growth models
The modified Gompertz model overestimates the maximum specific growth rate (µmax) by
~ 15 % (Maximum specific growth rate: µmax = Ln(2)/generation time)
5
Log ( N t ) = Log ( N max × exp(− exp(µ' (time − t i ))))
4
3
2
1
0
0 5 10 15 20
Storage period (days)
⎛ ⎡ µ × exp(1) ⎤⎞
Modified Gompertz model Ln( N t / N 0 ) = A × exp⎜⎜ − exp⎢ max × (lag − time) + 1⎥ ⎟⎟
⎝ ⎣ A ⎦⎠
8 LAB L. monocytogenes
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6
log(cfu/g)
5
4
L. monocytogenes + LAB
3
2 L. monocytogenes with
1 lag phase + LAB
0
0 10 20 30 40 50 60
Days at 5°C
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Primary model for microbial interaction
• Jameson effect:
All microorganisms in a food stop growing when the dominating
microflora reaches its maximum population density
dLAB/ dt ⎛ LABt ⎞ 8
= µ max
LAB
× ⎜⎜1 − ⎟⎟ 7
LABt ⎝ LABmax ⎠ 6
-1
Log cfu g
5
4
3
2
dLm / dt ⎛ Lmt ⎞ ⎛ LABt ⎞
= µ × ⎜⎜1 − ⎟⎟ × ⎜⎜1 − ⎟⎟
Lm 1
max
⎝ max ⎠ ⎝ max ⎠
0
Lmt Lm LAB 0 1 2 3 4 5 6 7 8
Storage period (days at 25°C)
• Logistic model for growth and interaction between LAB and L. monocytogens (Lm)
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Cardinal parameter models
1.2 1.2
1.1 µopt 1.1 pHopt
1.0 1.0
0.9 Topt 0.9
-0.5
-0.5
0.8 0.8
Sqrt(µmax), h
Sqrt(µmax), h
0.7 0.7
0.6 0.6
0.5 0.5
0.4 0.4
0.3 0.3
0.2 0.2
0.1 0.1
Tmin Tmax pHmin pHmax
0 0
0 5 10 15 20 25 30 35 40 45 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5
Temperature (°C) pH
⎧ 0, , X ≤ Xmin
⎪⎪ (X − Xmax) ⋅ (X − Xmin)n
CMn (X) = ⎨ n−1
, Xmin < X < Xmax
⎪(Xopt − Xmin) ⋅[(Xopt − Xmin) ⋅ (X − Xopt) −(Xopt − Xmax) ⋅ ((n −1) ⋅ Xopt + Xmin − n⋅ X)]
⎪⎩ 0, , X ≥ Xmax
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Lag time models
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Predictiv microbiology – 27751 / 076018
(Predicting shelf-life and safety of foods)
DFU, Lyngby FF
* Not detectable in 25 g
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Growth/no growth interface models
• The combinations og environmental parameters that prevent microbial
growth is important e.g. for product formulation (Hurdle concept,
Multiple barrier technology)
• Growth/no growth interface ( or growth limits) models include:
• Polynomial models
• Square-root type models
• Cardinal parameter model
• Logistic regression models
• Artificial neural networks (ANN)
Logistic
regression
0.98
Cardinal
parameter
0.97
model
0.96
ANN
0.95
CPM
0.94
0 5 10 15 20 25 30 35 40 45 50
Temperature ( C)
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A cardinal parameter growth model predicted the growth/no growth
interface for Listeria
µ =µ ⋅ CM 2 (T ) ⋅ CM 1 ( pH ) ⋅ ξ (T , pH )
max opt
⎧ 1 ,ψ ≤ ½
⎪
ξ (ϕ (T , pH ) = ⎨2(1 − ψ ) ,½ < ψ < 1
⎪ 0 ,ψ ≥ 1
⎩
No interaction
ϕe
between T and pH ψ =∑ i
i 2∏ (1− ϕ e j )
j≠ i
Growth/no
growth interface
ϕT = (1− CM2 (T))2
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Exercise 1: How to obtain microbial growth data from ComBase and estimate
growth kinetic parameters by using MicroFit
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Exercise 1 continued: - To facilitate this exercise csv-files from Combase has been edited
in such a way that MicroFit can read the data and extimate kinetic parameters.
- Start MicroFit and estimate maximum specific growth rates for the 8 growth curves
included as csv-files in Exercise1.zip (this file can be downloaded from
www.dfu.min.dk/micro/pd.htm). Exercise1.zip also includes a lst-file with information
about the pH, %CO2, %O2 and %N2 for each of the 8 growth curves. To access the lst-file
from MicroFit use ’File’, ’Browse data set 1…’ and select ’List files (*.lst)’. For MicroFit
to read a growth curve use ’File’, ’Load data set …’ and ’Åbn’.
- When data are uploaded use the ’Fit Model’ bottom in MicroFit to estimate growth
kinetic parameters. MicroFit uses a modification of the four-paramater Logistic model
(Baranyi & Robewrts 1994) as primary growth model.
- Microfit allows two growth curves to be compared and it can be tested if. e.g maximum
specific growth rate (mumax) differ significantly. Use this facility to compare maximum
specific growth rates of Listeria monocytogenes Scott A growing with (i) 0% CO2 or
20.5% CO2; (ii) 20.5% CO2 or 41.5% CO2 and . (ii) 0% CO2 or 41.5% CO2.
- Is oxygen CO2/O2 gas mixtures increasing or reducing the maximum specific growth rate
of Listeria monocytogenes as compaed to CO2/N2 gas mixtures ?
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Exercise 1: Effect of CO2 on he maximum specific growth
rate (µmax) of Listeria monocytogenes
0.40
: CO2/N2 gas mixtures
0.35 : CO2/O2/N2 gas mixtures
0.30
µmax (1/day)
0.25
0.20
0.15
(37% O2)
0.10
(56% O2)
0.05
0 10 20 30 40 50 60 70 80
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2) continued
- After packaging, CO2 is absorbed into the water- and lipid-phases of salmon and the
initial gas mixture used when packaging fresh MAP salmon must contain a higher
concentration of CO2 than the desired equilibrium concentration. Storage temperature,
initial gas/product ratio and intial CO2 concentration determine the equilibrium
concentration of CO2 in fresh MAP fish. Use the SSSP function ’Calculation of % CO2 in
fresh MAP fish’ to determine one or several combinations of initial gas/product ratio and
intial CO2 concentration that results in a CO2 concentration of 49% at 2°C.
3) With an initial cell density of 10 cfu/g for P. phosphoreum the shelf-life of fresh MAP
salmon in 0% CO2 is 9.6 days at 2°C but only to 5.9 days at 5°C. Is it possible to
compensate for the higher storage temperature by increasing the concentration of CO2 in
the modified atmosphere? If yes indicate one or several combinations of initial gas/product
ratio and intial CO2 concentration that can be used.
OBS. You can use the help-function within SSSP to obtain information about the models
used to predict growth of P. phosphoreum and absorbsion of CO2 into fresh fish.
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Referencer 1
Augustin,J.-C. and Carlier,V. (2000) Modelling the growth of Listeria monocytogenes with a multiplicative
type model including interactions between environmental factors. International Journal of Food Microbiology
56, 53-70.
Baranyi, J. and Roberts, T.A. (1994). A dynamic approach to predicting bacterial growth in food. International
Journal of Food Microbiology 23, 277-294.
Baranyi, J., Pin, C. and Ross,T. (1999) Validating and comparing predictive models. International Journal of
Food Microbiology 48, 159-166.
Dalgaard,P. and Jorgensen,L.V. (1998) Predicted and observed growth of Listeria monocytogenes in seafood
challenge tests and in naturally contaminated cold smoked salmon. International Journal of Food Microbiology
40, 105-115.
Giménez,B.C. and Dalgaard,P. (2004) Modelling and predicting the simultaneous growth of Listeria
monocytogenes and spoilage microorganisms in cold-smoked salmon. Journal of Applied Microbiology 96, 96-
109.
Legan, D., Vandeven, M., Stewart, C. and Cole, M. (2002) Modelling the growth, survival and death of
bacterial pathogens in foods. In Foodborne pathogens ed. Blackburn,C.d.W. and McClure,P.J. pp. 53-95.
Cambridge, UK: Woodhead Publishing Ltd.
LeMarc, Y et al. (2002) Modelling the growth kinetics of Listeria as a function of temperature, pH and organic
acid concentration. International Journal of Food Microbiology 73, 219-237.
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Referencer 2
McKellar, R. C. and Lu, X. (2004) Modeling Microbial Responses in Foods. Boca Raton, USA: CRC Press.
343 p.
Roberts, T. A. and Jarvis, B. (1983) Predictive modelling of food safety with particular reference of
Clostridium botulinum in model cured meat systems. In Food microbiology: Advances and prospects ed.
Roberts,T.A. and Skinner,F.A. pp. 85-95. London: Academic press.
Ross,T. (1996) Indices for performance evaluation of predictive models in food microbiology. Journal of
Applied Bacteriology 81, 501-508.
Ross, T. and Dalgaard, P. (2004) Secondary models. In: Modeling Microbial Responses in Foods pp. 63-150.
Boca Raton, USA: CRC Press.
Rosso,L., Lobry,J.R., Bajard,S. and Flandois,J.P. (1995) Convenient model to describe the combined effects of
temperature and pH on microbial growth. Applied and Environemental Microbiology 61, 610-616.
Turner,M.E., Bradley,Jr.E.L., Kirk,K.A. and Pruitt,K.M. (1976) A theory of growth. Mathematical Biosciences
29, 367-373.
Zwietering,M.H., Jongenburger,I., Rombouts,F.M. and Van'T Reit,K. (1990) Modeling of the bacterial growth
curve. Applied and Environmental Microbiology 56, 1875-1881.
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