Professional Documents
Culture Documents
Genetics/Biomolecular Sciences
11/6/09 4:00:24 pm
Table of contents
I. Summary of essential information ........................................................................................................ 3 Section B: Level-3 Regulations, Policy & Advice........................................................................................... 3 Assessed Coursework Hand-ins ................................................................................................................. 3 Class Tests.............................................................................................................................................. 3 End-of-Course Examinations ..................................................................................................................... 3 Progress to Level-4 Honours Programme .................................................................................................... 3 Library Visits........................................................................................................................................... 3 Laboratory Course ................................................................................................................................... 3 Student-Directed Learning (SDL)............................................................................................................... 3 Data Analysis Sessions............................................................................................................................. 3 Reading Party.......................................................................................................................................... 3 Division of Molecular and Cellular Biology Seminars ..................................................................................... 3 Programme Coordinator & Deputy for Level-3 ............................................................................................. 3 Programme Coordinator for Level-4 ........................................................................................................... 3 Undergraduate School Office..................................................................................................................... 3 II. Introduction....................................................................................................................................... 4 Why Genetics? ........................................................................................................................................ 4 Diary ..................................................................................................................................................... 4 III. Aims and Intended Learning Outcomes ................................................................................................. 4 Aims of the Level-3 Honours Programme.................................................................................................... 4 Intended Learning Outcomes of the Level-3 Honours Programme.................................................................. 4 Aims of the Level-3 Designated Degree Programme..................................................................................... 5 Intended Learning Outcomes of the Level-3 Designated Degree Programme................................................... 5 IV. Outline of the Programme content ........................................................................................................ 5 Programme Structure............................................................................................................................... 5 Teaching Methods .................................................................................................................................... 6 Lectures ................................................................................................................................................. 6 Laboratories............................................................................................................................................ 6 Student-Directed Learning ........................................................................................................................ 7 Data Analysis Sessions............................................................................................................................. 7 Reading Party.......................................................................................................................................... 7 Seminars ................................................................................................................................................ 7 V. Items of summative assessment .......................................................................................................... 7 Coursework Assessments ......................................................................................................................... 7 Class tests .............................................................................................................................................. 7 End-of-Course Examinations ..................................................................................................................... 7 Relative Weighting of Assessment.............................................................................................................. 8 Pontecorvo Awards .................................................................................................................................. 8 External Examiners.................................................................................................................................. 8 VI. Details of coursework to be handed in................................................................................................... 9 Essays.................................................................................................................................................... 9 Laboratory Reports .................................................................................................................................. 9 Oral Presentations (Talks)....................................................................................................................... 10 Other Assessed Coursework.................................................................................................................... 10 VII. Textbooks ........................................................................................................................................ 10 Online textbooks ................................................................................................................................... 10 Useful books to consult .......................................................................................................................... 10 Additional Genetics Texts........................................................................................................................ 11 Genetics revision ................................................................................................................................... 11 Books for background reading................................................................................................................. 11 Periodicals and Reviews.......................................................................................................................... 11 VIII. Lecture block synopses ................................................................................................................. 12 Unit A: Molecular Genetic Methods........................................................................................................... 12 Unit B: Genomics .................................................................................................................................. 12 Unit C: Proteins ..................................................................................................................................... 13 Unit D: Membranes and Filaments ........................................................................................................... 13 Unit E: DNA Structure and Function ......................................................................................................... 15 Unit H: Gene Expression......................................................................................................................... 15 Unit I: Mobile DNA................................................................................................................................. 15 Unit L: Evolutionary Genetics .................................................................................................................. 16 Unit N: Biotechnology ............................................................................................................................ 16 Unit O: Essential Cell Biology .................................................................................................................. 16 Unit P: Experimental Strategies............................................................................................................... 16 IX. Laboratories..................................................................................................................................... 17 Molecular Genetic Methods ..................................................................................................................... 17 Molecular Graphics and Protein 3-Dimensional Structure ............................................................................ 17 C. elegans: Model Organism ................................................................................................................... 17 Plasmids and Transposons ...................................................................................................................... 17 Plant Molecular Biology .......................................................................................................................... 17 Animal Cell Culture ................................................................................................................................ 17 X. Student-directed learning .................................................................................................................. 18 XI. Other useful programme information .................................................................................................. 18 Teaching Staff ....................................................................................................................................... 18 Class and Divisional Libraries .................................................................................................................. 18
Computers.............................................................................................................................................19 Student (Common) Rooms ......................................................................................................................19 Lockers .................................................................................................................................................19 Photocopiers ..........................................................................................................................................19 E-mail ...................................................................................................................................................19 Moodle ..................................................................................................................................................19 The Molecular & Cellular Biology / Genetics Society ....................................................................................19 Careers Information................................................................................................................................20 Vacation Employment .............................................................................................................................21 XII. Level-4.............................................................................................................................................21 Choice of Project ....................................................................................................................................22 Dissertation ...........................................................................................................................................22 Level-4 Honours Options .........................................................................................................................22 XIII. Assessment Regulations .................................................................................................................24 Minimum Requirements for the Award of Credits and Incomplete Assessment................................................24 Absence ................................................................................................................................................24 Absence from End-of-Course Examinations................................................................................................24 Illness or Adverse Circumstances affecting performance during End-of-Course Examinations...........................24 Absence from Class Tests ........................................................................................................................25 Illness or Adverse Circumstances affecting hand-in of Assessed Coursework .................................................25 Late Submission of Coursework................................................................................................................25 Cheating................................................................................................................................................25 XIV. Assessment procedure .......................................................................................................................25 How you will be Assessed: Code of Assessment .........................................................................................25 End-of-Course Examination Procedures .....................................................................................................26 Assessment Scheme for Students on a Designated Degree Course ...............................................................26 Transfer from Honours to Designated Degree Programme ...........................................................................26 End-of-Course Examination Timetable.......................................................................................................26 Resit Examinations .................................................................................................................................27 Student Portfolios ...................................................................................................................................27 Appealing Against the Published Result for a Course ...................................................................................27 Students with Disabilities.........................................................................................................................27 XV. Progression to level 4.........................................................................................................................27 Students in Level 3 Honours Programmes..................................................................................................28 Transfer from a Level 3 Designated Degree Programme to a Level 4 Honours Programme...............................28 XVI. Communication between staff and students .........................................................................................28 E-mailing Staff .......................................................................................................................................28 Notices to Students ................................................................................................................................28 Staff-Student Liaison Committees and Representation of the Student Voice ...................................................28 Written Complaints .................................................................................................................................29 XVII. Faculty Of Biomedical & Life Sciences Policy Statements.....................................................................29 XVIII. Session Dates ...............................................................................................................................29
Class Tests
One class test. Dates and venues are listed in the timetable.
End-of-Course Examinations
Two 3-hour papers in May (dates published by the Registry in March).
Library Visits
There is an introductory seminar on literature searching as well as sessions on database searching. Visit the Enquiry Desk to collect your username and password for the various databases.
Laboratory Course
Most laboratories are held on Mondays and Tuesdays 10.00-17.00 and Wednesdays 10.00-13.00 (for much of the programme you will be in groups so will not be working in the lab at all these times).
Reading Party
22-23rd October 2009
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II.
INTRODUCTION
The staff would like to welcome you to the Level-3 programme. Courses at this level should be rewarding and enjoyable, but they require a strong sense of commitment from you and your active participation and attendance for all aspects of the course.
It is very important to realise that you must complete at least 75% of the assessment and attend all components of a course regularly in order to be awarded a final result (see Minimum Requirements for the Award of Credits).
We strongly urge you to take the time to read through this booklet; it contains most of the information that you will need during the year. Please keep this Programme Information Document for future reference; you may need to provide course details for further study or other training. If you require the information after graduation, the Undergraduate School will make a charge for providing it. While the information contained in the document is correct at the time of printing we reserve the right to make changes. Check Moodle, the notice board and your email messages regularly. The current version of this booklet is available on the Web via the Undergraduate School home page.
Why Genetics?
The function of the genes is central to life. Living organisms are distinguished from other complex phenomena by the fact that their organisation and development depends on information passed down from a previous generation. Genes encode the majority of that information. Classical genetics uses variation in the inherited genes, either natural or induced by mutation in the laboratory, to investigate the nature of that information and the processes it controls. The methods of Molecular Genetics have extended our ability to probe gene function beyond all previous dreams, and can be applied to problems ranging from medicine to population evolution. In consequence, Genetics graduates remain in demand and find it easy to move into other disciplines. Prospects can be expected to improve further as the result of genome sequencing projects, programmes in agricultural and medical genetics and forensics, genetic applications to environmental problems, and molecular genetic approaches to brain structure and function.
Diary
We suggest you write into your diary all events that do not fit the standard weekly pattern, as indicated in the timetable, especially changes of lecture theatre. Further detailed timetables of laboratories and small group learning sessions will be issued from time to time: keep a careful note of these.
III.
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communicate effectively and lucidly experimental, interpretative and ethical aspects of science, using oral presentations, written work and information technology.
IV.
The programme is taught in conjunction with the Biotechnology and Molecular & Cellular Biology (MCB) programmes. Most of the lectures, laboratories and SDL session are joint and some of the lectures are also shared with other programmes. Lectures, laboratory classes, SDL sessions, data analysis sessions, the reading party and class tests are essential components of the programme. You must attend them all, and hand in all written work on time. You are reminded that these programmes are full time and that essential commitments may be timetabled during the year which are not included in this document. Whilst we are fully supportive of students need to undertake paid work, our experience is that students exceeding a maximum of 10 hours/week are likely to get poor results from the programme. The Level-3 Honours programme consists of two component Honours courses: Genetics 3A and Genetics 3B. The Level-3 Designated Degree programme consists of two component Designated Degree courses: Biomolecular Sciences 3A: Genetics and Biomolecular Sciences 3B: Genetics. The 3A courses are taught in Semester 1 while the 3B courses are taught in Semester 2.
Programme Structure
The programme consists of a series of lectures arranged in 11 units of varying length. Some are accompanied by laboratory classes, some by Student-Directed Learning sessions. In many cases, lectures blocks are intermixed in the timetable in order to fit in with other programmes.
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Teaching Methods
Teaching Method Lectures Laboratories Student-directed learning (SDL) Data analysis sessions Reading party Student presentations Number of hours (approx) 150 220 30 10 (2 days) 10
Lectures
Block name Semester 1: Genetics 3A and Biomolecular Sciences 3A: Genetics Block Block Block Block Block A Molecular Genetic Methods B Genomics C Proteins D Membranes & Filaments E DNA Structure & Function
H Gene Expression I Mobile DNA L- Evolutionary Genetics N Biotechnology O Essential Cell Biology P Experimental Strategies
We expect you to attend all lectures. Only by attending the lecture course can you learn the current viewpoints and the emphasis given to a specific topic. Lectures are also intended to act as a guide through the enormous quantity of published scientific literature in that area. They should provide you with the central facts of the subject. All these factors mean that your lecture notes are a particularly important source of information for answering examination questions. Remember it can be difficult enough to interpret your own lecture notes, so it is generally very unwise to rely on notes copied from a classmate. Keep them safe! The date, time, location and lecture topics are to be found in the Timetable. Please check this carefully since times and venues vary. More detailed timetables for laboratories etc. will be issued from time to time. All lecturers hope you will find their material exciting and understandable. Try to do related reading, and self-test questions when supplied, close to the time. If you have questions or problems about individual lectures, arrange to meet the lecturer responsible as soon as you can. Many queries can be dealt with by e-mail. Level-3 needs a different, more long-term approach to study than Level-2. For help with study skills, see: www.gla.ac.uk/services/sls/effectivelinks.index.html Many staff will place lecture summaries on Moodle. These are support material and do not replace the lectures.
Laboratories
The laboratories are designed to reinforce the knowledge gained from lectures and to develop the practical skills required for Genetics. These skills will be vital during your final year research project. You are required to be present for the whole of each laboratory. Time slot Semester 1: Genetics 3A and Biomolecular Sciences 3A: Genetics Semester 2: Genetics 3B and Biomolecular Sciences 3B: Genetics Laboratory block Molecular Genetic Methods Molecular graphics and protein 3-dimensional structure C. elegans labs: Model Organism Plasmids and Transposons Plant Molecular Biology Cell Culture
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Student-Directed Learning
You will be assigned to small groups (with a mix of Genetics / M&CB / Biotechnology/ Plant Science students). These sessions involve discussions on specific themes where you are expected to research your own material and give feedback to the group.
Reading Party
There will be a joint reading party with the MCB, Biotechnology and Plant Science students comprising group discussions, presentations by small teams on various topics and a debate. This is a not too serious occasion, enjoyed by all, and an opportunity to meet students and staff in an informal setting.
Seminars
Throughout the year, there will be many research and review seminars, some directly relevant to the programme. Those organised for the Division of Molecular and Cellular Biology are likely to be of particular interest. You will find that information from these can be very valuable in broadening your horizons, especially in preparation for Level-4. You are strongly urged to attend selected seminars. We will send you occasional reminders by e-mail.
V.
You will be awarded a separate grade for each of the two component courses which make up the Level-3 programme. Your result for each course is based on the items of assessment detailed below. Note that the grades you obtain for Level-3 will be used for writing references, for example for PhD places and also as a guide to your ability if special circumstances affect your Level-4 result. It will also be one of the factors considered when allocating final-year projects and Honours options.
Coursework Assessments
The assessed coursework comprises written laboratory reports, tests, essays, a problem exercise and oral presentations (talks).
Class tests
There will be one class test. It will cover the work of Semester 1 and requires 4 essays from a choice of 10. Your essays will be returned to you with feedback. The class test will allow you to monitor your own progress and to familiarise yourself with the examination format. Marks from the Class Test will count 5% towards the continual assessment of Genetics 3A. but is also important for feedback.
End-of-Course Examinations
Written Papers
The Level-3 programme has two 3-hour examination papers in May.
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Diagrams
Diagrams can save a lot of words. Many answers will be marked as incomplete without them. The axes of graphs must always be labelled with the parameters they represent, and often also with units. Remember this when revising.
Subdivided questions
Questions are often in two or more parts. Make sure you answer all of them, giving them equal weight unless the question indicates otherwise. The use of subheadings in your answer to any question is a sign of good planning.
Pontecorvo Awards
Interest from a fund named after the founder and first professor of the University of Glasgows Department of Genetics, Professor Guido Pontecorvo, provides prizes for meritorious performance in Genetics Level-3 and Level-4 examinations.
External Examiners
Prof David McConnell, Trinity College, Dublin.
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VI.
Ensure that all work is clearly labelled on the top page with L3 Genetics and the assignment title as below, as well as your matriculation number. Note that deadlines may be varied and any changes will be notified to the whole class in good time. Items counting towards assessed coursework mark Date / Deadline for hand-in Semester 1 Tryptophan Synthetase problem exercise Molecular Genetic Methods lab test Molecular Graphics lab report Class test Model Organisms essay C. elegans lab report Friday of Week 4 Wednesday of Week 5 Friday of Week 7 Monday of Week 12 Friday of Week 12 Friday of Week 13 Semester 2 Genetics Talk Plasmid Workshop essay Plasmids & Transposons lab report Plant Molecular Biology lab report Evolution essay Evolution talk Thursday and Friday of Week 2 Friday of Week 5 Friday of Week 7 Friday of Week 9 Friday of Week 10 Week 10 & 11 5 5 5 5 5 5 KOD et al. WMS WMS JJM KOD et al. KOD et al. 5 5 5 5 5 5 RMC JATD EJMW various KOD et al. ILJ Weighting (out of 30) Staff
Note that coursework marks will be one of the factors considered when allocating Level-4 projects towards the end of Level-3.
Essays
Model Organisms: Essay on the use of model organisms to address specific biological problems. Details to be announced. Plasmid Workshop Essay: About 500 words on a subject that will be relevant to several posters from the Plasmid Posters prepared by groups of students as part of the Plasmids and Transposons Lab. Titles will be given during the labs. Evolution Essay: Essay based on material associated with the Evolutionary Genetics unit. Details to be announced.
Laboratory Reports
Writing Laboratory Reports
C. elegans, Plasmids & Transposons and Plant Molecular Biology Lab Reports: Full instructions will be issued at the laboratory sessions. In general, reports should be accurate, informative and concise. Although you will discuss the experiments and data with other students, the report itself must be all your own work. Details of methods given in the manuals should not be reiterated in your report unless you deviated from these. Graphs should be fully annotated (title, axes labels & units). It doesnt matter if your data are poorbut you should suggest reasons for this, and perhaps suggestions of what you would do to improve the data. You should fully interpret and discuss your own data and, if indicated by the lab leader (or if your data is very poor / uninterpretable), the class data. Marks will mainly be awarded for the report itself, but bonus marks will be awarded for strong contributions during the laboratory sessions. Failure to contribute during laboratory sessions, or poor attendance may count against you (though practical disasters / poor results will not). Molecular Graphics Lab Report: Completion of the workbook used during the laboratory sessions.
Laboratory Notebook
All lab supervisors will expect you to keep a working record as experiments progress, which will form part of your portfolio. This is good practice for note-taking in future lab-work, such as your L4 project. It will contain notes about changes of experimental details, observations made on-the-spot, and raw data. For any experiments not written up more formally, it should also contain processed data and conclusions. It will look worn and quite likely be marked by spills! Do not use it for handing in reports for marking, as they may not be returned before the next laboratory.
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VII.
TEXTBOOKS
The following books are suitable for purchase. We do not expect you to be able to afford all of them, so it is advisable to see if you can obtain any of them second hand. Since it is always advisable to compare the views of different texts on any topic, you should if possible, arrange with friends that you have a variety of books to consult between you. Copies of most of them are also available in the Molecular and Cellular Biology class library, Joseph Black Building; in Anderson College Library and/or the Genetics students room, Robertson Building , Room 110. (i) Griffiths et al. An Introduction to Genetic Analysis 8th ed. Freeman 2005* or Russell iGenetics Benjamin Cummins 2002 (or anything else by Russell) or Hartwell et al. Genetics; from genes to genomes McGraw Hill 2000 or one of the many other excellent Genetics textbooks currently available Alberts et al. The Molecular Biology of the Cell 4th ed. Garland Publishing Co. 2002* or Lodish Baltimore, Berk et al. Molecular Cell Biology 5th ed. Freeman 2004* Lewin Genes VIII Pearson 2004 or Brown TA Genomes 2 BIOS Scientific 2002 or Hartl DL & Jones EW Genetics: Analysis of Genes & Genomes 5th ed. Jones & Bartlett 2001 (also the less comprehensive but cheaper Hartl DL & Jones EW Essential Genetics: a Genomics Perspective 3rd ed. Jones & Bartlett 2002) Berg JM, Tymoczko JL & Stryer L Biochemistry 6th ed. Freeman 2006* or Darby & Creighton Protein structure (1993) IRL Press, In Focus Series or Brandon & Tooze Introduction to Protein Structure 2nd ed. Garland 1999 Cann AJ Principles of Molecular Virology 3rd ed. 2001
(ii)
(iii)
(iv)
(v)
For the Molecular Genetic Methods Lab and associated lectures: Nicholl An Introduction to Genetic Engineering 2nd ed. Cambridge University Press 2002 Also useful, although not essential: Bucanan, Gruissem and Jones Biochemistry and Molecular Biology of Plants Publ John Wiley ISBN 0-943088-39-9 Brown TA Genetics, a molecular approach 3rd ed. Chapman & Hall 1997 *available online, see below.
Online textbooks
A collection of textbooks is freely available on-line at NCBIs Bookshelf. NCBI is the National Center for Biotechnology Information; these include the books asterisked above. The site also provides a valuable search tool. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=books Griffiths et al. Modern Genetic Analysis also has an associated website: http://bcs.whfreeman.com/mga2e as does Berg et al. Stryer: http://www.whfreeman.com/stryerbiochem5
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Genetics revision
If you feel that you need to revise your basic Genetics, two good short books are: Fincham 1994 Genetic Analysis Blackwell Scientific. Radford, Cove & Baumberg 1995 A Primer of Genetics, Longman
Taylor L The Laurie Taylor Guide to Higher Education Times Higher Education Supplement Ptashne Genetic Switch Watson The Double Helix Weidenfield & Nicolson Watson & Tooze The DNA Story Freeman Berry Inheritance and Natural History Collins Darwin On the Origin of Species Penguin 1859 Dawkins The Selfish Gene O.U.P. Dawkins The Extended Phenotype O.U.P. Steve Jones The Language of the Genes Flamingo paperbacks 1993 Stephen Jay Gouldmany readable books including Wonderful Life Neel JB Physician to the Gene Pool 1994 (Hiroshima and other topics) Rose, Lewontin & Kamin Not in our Genes Kitcher The Lives to come Penguin (Impact of genomics on society) Margulis Symbiosis in Cell Evolution Schrodinger What is Life? Cambridge 1945 Mendel Experiments in Plant Hybridization (intro. RA Fisher) Harvard Brink (ed.) Heritage from Mendel University of Wisconsin 1967 Peters (ed.) Classic Papers in Genetics Prentice Hall 1959 Federoff & Botstein The dynamic genome Cold Spring Harbor Press 1993 (Festschrift for Barbara McClintock, the discoverer of transposable elements)
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NEW SCIENTIST also contains good articles on matters of popular scientific interest plus a variety of scientific news. NATURE is a general science journal in which many of the most important scientific discoveries are first announced. It also contains useful reviews and informative News and Views items. SCIENCE is more or less the American equivalent of Nature. TRENDS IN GENETICS: Short reviews on current Genetic topics. TIBS (Trends in Biochemical Sciences) is good for biochemical news. CURRENT BIOLOGY and CURRENT OPINION inGenetics and Development, Cell Biology, Immunology, Biotechnology are good for concise updates on a wide variety of topics. CELL contains both longer and mini-reviews on cell and molecular genetics. PNAS (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE USA) contains detailed articles on significant discoveries. ANNUAL REVIEW OF GENETICS and ANNUAL REVIEW OF BIOCHEMISTRY are important reference books. Many of the above are available for consultation in the Genetics Information Centre, Anderson College.
Dr JJ Milner: Transgenics
Requirements for stable introduction of foreign genes into multicellular organisms. Regeneration, stem cells and tissue culture. Transgenic model organisms. Approaches for the introduction of foreign genes into Drosophila and C. elegans. Introduction of foreign genes into plants using Agrobacterium and direct DNA transfer. Introduction of foreign DNA into mammalian embryos. Expression over-expression and knockout/knockdown of host and foreign genes. Reporter gene constructs as a means of studying gene expression in multicellular organisms.
Unit B: Genomics
Dr MES Bailey, I Johnstone: Essential Genomics
The nature of the genome, the constituents and arrangement of material in a genome, genome vital statistics; typical eukaryotic gene structure; the basic principles of genome mapping, and history of the development of the techniques and strategies employed in genome mapping and genome projects, exemplified by the C. elegans and Human Genome Projects; how possession of complete genome sequences has implications for post-genome biology, including positional cloning and candidate gene mapping strategies for human disease genes, gene expression analysis and epigenetics, comparative genomics and the study of genetic diseases in model organisms.
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those from model animals and human. The use of yeast to understand many human inherited diseases will be discussed, focusing on two specific examples: Friedreich's Ataxia and Huntington's disease.
Unit C: Proteins
Prof G Milligan
The proteome. How many proteins are produced by eukaryotic cells (probable number of genes and secondary modifications)? Purification of proteins; differences in scale and purity requirements depending on purpose. Sources, extraction, stability and assay of proteins.
Prof J Milner-White
Protein structure. The essential properties of the 20 different amino acids. Polypeptide conformation, torsion angles, Ramachandran plot. Secondary, tertiary, domain and quaternary structure of proteins. Hydrogen bonding and secondary structure. The four main structural classes of proteins, all-alpha, all-beta, alpha/beta and other (as in the SCOP database). Quaternary structures of proteins, how subunits relate to each other via symmetry axes. Forces involved in maintaining protein structure.
Dr B Smith
Methods for determining protein structure. Basis and applications of the principal techniques:- X-ray crystallography, electron microscopy, NMR and circular dichroism.
Prof G Lindsay
The life cycle of a protein; protein folding in vitro and in vivo; protein folding intermediates and protein maturation; molecular chaperones and problems of in vivo protein folding/assembly; intracellular protein targeting and translocation competence; quality control and misfolding of proteins; factors controlling protein degradation/turnover; protein folding and disease.
Prof H Nimmo
Enzyme activity and its regulation. Energy profiles for reactions. Factors which can lead to rate enhancement in enzymes. Flexibility in enzymes. Examples of mechanisms to illustrate these principles. Enzyme regulation. Factors which influence activity in vitro and in vivo. Regulation of metabolic pathways by conformational changes and by covalent changes.
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Prof L Machesky (2): Cell Dynamics: The microtubule and actin cytoskeletons
Both the microtubule and actin cytoskeletons work together to control fundamental aspects of cell behaviour, including cell migration, cell division and maintenance of specialized cell shape or polarity. We will discuss how microtubules behave biochemically, based on the properties of tubulin and microtubule associated proteins, as well as in cells, especially during cell division. We will also discuss how actin behaves as a dynamic filament that can drive cell motility and shape changes. Both actin and microtubule dynamics are in part regulated by signalling via small GTPase proteins and we will cover the Rho-family GTPases and their regulation of the actin cytoskeleton. Crosstalk between the microtubule and actin systems is important and will be highlighted when appropriate to illustrate how these two filament systems cooperate within cells.
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Dr C Woolhead: Translation
An overview of the components of protein synthesis, the genetic code, tRNA and aminoacylation. Ribosome initiation; initiation factors, pre-initiation complex, ribosome structure, subunit assembly and the peptidyl-transferase centre. The Translation reaction; elongation factors, peptide bond formation, the ribosome exit tunnel, stop codons and release factors. Regulation of translation by the ribosome and the use of tmRNA. Ribosomes from different organisms and the use of antibiotics on bacterial ribosomes.
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What is DNA Recombination? Types of recombination; homologous, site-specific, non-homologous end-joining (NHEJ), transposition etc.. Relationship of homologous recombination (HR) to sex and meiosis. Relationship of HR with genetic linkage/mapping. Crossing over and gene conversion. Tetrad analysis. What is heteroduplex? Mechanism of HR; the double-strand break repair (DSBR) model. Processes and enzymes involved in DSBR; strand invasion, Holliday junction formation, branch-migration and resolution. Central role of RecA/Rad51. Structures and mechanisms of RecA/Rad51 and RuvABC. Steps and enzymes involved in meiotic HR. Detailed description of DSBR model. DNA repair processes connected with HR. Why do all organisms have HR? Use of ascus-forming fungi to study the genetics of HR. HR in bacteria; mechanism of RecBCD.NHEJ; functions and mechanism.
Unit N: Biotechnology
Dr P Dominy: Plant Biotechnology
Genetic manipulation of fruit ripening: suppression of ploygalacturonase: modification of ethylene biosynthesis: manipulation of isoprenoid pathway. Engineering crops with improved vitamin content, Golden Rice, vitamin A, carotenoid biosynthesis. Engineering plant protein content for improved nutrition: lysine deficiency in cereal: methionine and cysteine deficiency in legumes: storage proteins, phaseolin, vicilin, zein, prolamnin, . Improved crop yield through genetic manipulation of photosynthesis. Molecular Pharming in palnts: carbohydrates, lipids and proteins: hirudin, industrial-scale production of enzymes.
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IX.
LABORATORIES
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X.
STUDENT-DIRECTED LEARNING
Topic Mutants and Models Tryptophan Synthetase Weeks 1-10 1-2 Staff JVG, RGS, KOD, JBW RMcC, RT
XI.
Teaching Staff
Name Dr Mark Bailey Dr Olwyn Byron Prof Shireen Davies Dr Peter Dominy Prof Julian Dow Miss Allison Faichney Dr Barbara Mable Prof Darren Monckton Dr Sheila Graham Dr Joe Gray Ms Wendy Henderson Prof Miles Houslay Prof Gareth Jenkins Dr Iain Johnstone Ms Loraine McDonald Mrs Julie Alexander Dr Richard McCulloch Dr Joel Milner Prof James Milner-White Dr Kevin ODell Dr Lisa Ranford-Cartwright Dr Mathis Riehle Dr Susan Rosser Dr Pam Scott Mr David Somerville Prof Marshall Stark Dr Joanna Wilson Dr Stephen Yarwood Dr Cheryl Woolhead Ms Angela Watt Location Davidson Building B2-11, GBRC Davidson Building Bower Building Davidson Building G.U. Library Graham Kerr Building Davidson Building Joseph Black Building 208, Robertson 107-108, Robertson Wolfson Building Bower Building 215, Davidson Building A2-93a, Joseph Black A2-93a, Joseph Black GBRC Bower Building Joseph Black B3-19 Davidson Building B5-17 GBRC B3-34A Joseph Black Bower Building Joseph Black Building A2-32f, Joseph Black Bower Building Davidson Building 239, Davidson Building Davidson Building Boyd Orr Building Tel 5994/6220 3752 5113/6811 4390 4616 6711 3532 6213 0003 5114 6219 5903 5906 3745 0784 0784 5946 5836 5283 6218 2639 2931 8644 3703 4014 5116 5108 3908 5161 6824 E-mail* M.Bailey@bio.gla.ac.uk O.Byron@bio.gla.ac.uk S.Davies@bio.gla.ac.uk P.Dominy@bio.gla.ac.uk Julian.Dow@bio.gla.ac.uk A.J.Faichney@lib.gla.ac.uk B.Mable@bio.gla.ac.uk D.Monckton@bio.gla.ac.uk S.V.Graham@bio.gla.ac.uk J.Gray@bio.gla.ac.uk W.Henderson@bio.gla.ac.uk M.Houslay@bio.gla.ac.uk G.Jenkins@bio.gla.ac.uk I.Johnstone@vet.gla.ac.uk loraine.mcdonald@bio.gla.ac.uk julie@mblab.gla.ac.uk R.McCulloch@vet.gla.ac.uk J.Milner@bio.gla.ac.uk e.j.milnerwhite@bio.gla.ac.uk K.ODell@bio.gla.ac.uk L.C.Ranford-Cartwright@bio.gla.ac.uk M.Riehle@bio.gla.ac.uk S.Rosser@bio.gla.ac.uk P.Scott@bio.gla.ac.uk david.somerville@bio.gla.ac.uk M.Stark@bio.gla.ac.uk Joanna.Wilson@bio.gla.ac.uk S.Yarwood@bio.gla.ac.uk C.Woolhead@bio.gla.ac.uk A.Watt@bio.gla.ac.uk
Most phone numbers can be reached from outwith the University by prefixing the number with 330
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sections Microbiology /Parasitology & Molecular & Cellular Biology /Genetics. Rules for both sections are the same and are posted on the front of the library. The library also includes a small number of video-tapes which can be borrowed for viewing at home, or with equipment available in the teaching area. A set of textbooks for the use of Genetics students is shelved in the Genetics Undergraduate Room 110 in Anderson College (ground floor of the Anderson-Robertson corridor). They should not be taken from that room.
Computers
In addition to University CSCE provision, the Joseph Black Building PC cluster (Room B3-21) will be available from 9.00am-5.00pm, Monday to Friday. It is usually available on an individual drop-in basis. From time to time, however, it is booked for class teaching. Please do not intrude on these sessions, even if some machines are not in use. The computers are connected to the University high-speed network, and in addition to e-mail and word-processing, can be used for accessing e-journals, and databases of literature, protein and nucleic acid sequences and molecular structure. We will assign you a username and password so that you can use these facilities and your own file space on the mblab Unix system. (See the separate booklet about the Mac cluster in the Joseph Black Building). Your mblab file space and e-mail is accessible via Appleshare from other networked Macs on campus.
Lockers
Locker keys will be allocated to L3 Students by Mr David Somerville. These keys to be kept for the session but must be returned to technical staff on or before the date of the last exam of the session. We strongly advise you not to leave books, bags, cash, credit cards or any other valuables unattended. Keep them on your person or in your locker. The University does not accept responsibility for your personal effects.
Photocopiers
A photocopier is situated in A2-94 and may not be used while the room is occupied by meetings. Cards for the copier can be purchased from either Miss Julie MacKenzie or Miss Loraine McDonald (room A2-93a) at the following times: Tue 12.-12.30, Wed 12-12.15 & Fri 13.30-13.45. Any problems with the copier should be reported to the above technicians as soon as they are discovered. Cards for the Genetics Departmental photocopiers may be purchased from the Divisional Office.
E-mail
Email to your Glasgow University address is frequently used for messages about the programme, some of which may be urgent, so it is your duty to watch out for these, preferably daily. Do not forward your email to another address. For ease of access from outside, we are increasingly using web pages. Genetics students should consult www.mblab.gla.ac.uk for M&CB and Genetics pages.
Moodle
Moodle gives you on- and off-campus access to teaching materials such as lecture outlines and powerpoint slides as well as other course information, (see the quick link on the Universitys home page). As with email, it should be checked on a regular basis.
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Careers Information
The University has an excellent Careers Service situated at 3, University Gardens. You are encouraged to go along and meet the Careers Adviser and gain familiarity with the programme of events, publications and the possible types of individual advice available from the Service.
Preparing your CV
Take considerable care in preparing this document. Remember that it has frequently to represent you to a prospective supervisor or employer. Make absolutely certain there are no spelling mistakes. Use no more than 2 fonts, and avoid underlininguse bold face instead. Avoid having too many different vertical alignments on a page. Print on good quality paper (not the cheapest as supplied to the mblab printer). Some experts recommend you list your educational career in reverse order, so that the most recent and important parts come first. In order not to lose impact and possibly bore readers, your CV should not be overly long. Although it is a good idea to keep a basic CV on file it may be beneficial to fine-tune it to each particular application. A possible layout is shown below.
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Fields of particular interest Special activities (scientific) Education University of Glasgow 3rd year: Genetics BSc. This is a programme taught jointly with third year Molecular and Cellular Biology by staff of the Institute of Biomedical and Life Sciences specialising in Genetics, Biochemistry, Cell Biology and Virology. It concentrates on the use of molecular techniques in the analysis of gene and cell function. There is a strong biochemical and genetical foundation. Viruses are considered both as experimental systems and as disease causing agents. Student-directed learning sessions study genetic methodology, human genetics and application of genetics to the study of evolution. The programme contains a large element of laboratory work including mutant isolation, genetic crosses, DNA blotting, sequencing and PCR, bacterial and plant gene expression, bacterial plasmids and transposons, mammalian cells in culture. Relevant vacation employment 1st and 2nd year: subjects passed, grades, exemptions and certificates Whatever School Certificates, subjects and grades at SYS, A or H and O levels etc. School activities Relevant vacation employment You may be asked about these in an interview! Usually your adviser, and a Programme Coordinator. Include their addresses with email / FAX / telephone numbers. It would be polite and desirable to ask them first! Also a good idea to provide them with a copy of your CV when a reference request is imminent.
Vacation Employment
In the summer vacation between years three and four, you may wish to work in a research institute, University or other laboratory, in this country or abroad. There can be considerable competition for places, so plan to get your application in by January at the latest. A number of scholarships are available for students with strong academic performance records from the Carnegie Foundation, the Wellcome Foundation, the Scottish Home and Health Department, and the Pontecorvo Fund. Arranging vacation work is a matter for your own initiative. Staff who teach in areas you are particularly interested in may sometimes be able to help with suggestions of who to approach.
XII.
LEVEL-4
The six component courses (20 credits each) of the Level-4 programme are: 4 x Honours options Genetics Project & Dissertation 4 Genetics Advanced Studies 4
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Choice of Project
Towards the end of Level 3 you will be asked to indicate your preference for Level 4 project. The Level 4 projects vary both in format and subject. They include wet research format projects placed within labs that are actively engaged in research in fields relevant to Group B degrees, outreach projects within schools, business projects (only available to those taking the Business and Bioscience Option), and potentially group projects where team skills are developed. The precise format and content of available projects can vary between years depending on what staff offer. We always attempt to accommodate students within projects that match their indicated preferences, however access to some projects is competitive and where places are limited, student academic performance is used to allocate places. The most critical measure of performance is your Level 3 grades. The list of projects to choose from will be posted in April. You will be required to write a 2000-3000 word introduction to your project by the first week of the L4 year. It is therefore advisable to prepare for this during the vacation. The introduction should consist of: (i) (ii) (iii) Purpose of project: brief description of the immediate objectives of the research. Background: an overview of our current understanding of the area of study. Plan of investigation: a clear statement of the experimental programme with explicit reference to the techniques to be employed.
As soon as you have been allotted a project, you should therefore consult your supervisor and discuss the background reading you will need to do before the following year.
Dissertation
The dissertation is an essay of approximately 3000 words on a topic of your own choice. It is up to your to choose a topic and find a member of staff who is willing to supervise you. Suggestions will be available if you require help. The dissertation does not have to be completed until Term 2 of Level-4, so there is no hurry, but you may wish to explore possible topics during your summer reading.
If you are taking a Single Honours programme, you will take four Honours options, one from each of the four 5-week blocks. If you are taking a Combined Honours programme, you will take only two Honours options. Towards the end of your Level-3 year, you will choose the options that you wish to study in Level-4. Please note that the list of offered Honours options changes slightly each year as options are introduced, withdrawn or moved; options available to students in Level-4 in the current session may not be available for you to choose. More information about options can be found on the Web page: www.gla.ac.uk/faculties/fbls/us/informationforcurrentstudents/level-4options/
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The Marine Microbiology option may run at the same time as either the Tropical Rainforest Ecology or the Tropical Marine Biology options as these three field trip-based options all run in August or September before the start of Semester 1. Before choosing your options, you should check the dates don't clash. Option outlines for next session will become available during Semester 2. You should list the Tropical Marine Biology or Tropical Rainforest Ecology options as a choice only if you have already been offered a place. There are a very limited number of places on these field trip-based options. You should list the Investigating Biological Function option as a choice only if you have already pre-registered your interest. Students who have not pre-registered may not choose this option.
Allocation to options:
Unless otherwise stated, there will be an upper limit of approximately 35 students per option. If an option is oversubscribed, preference will be given to those students with the best academic record at Level-3 and to those students in the Honours programme which offers the option. In addition, options may be cancelled if too few students wish to do them. Whenever possible, you will be allocated to your first choice of option. However, students are sometimes allocated to their second choice so it is important that your second choice is a valid selection for your Level-4 programme.
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If you do not meet these requirements, you will not normally be awarded an overall grade or credits for the course. If you are prevented from completing one or more of the items of assessment, or attending the exams at the end of a course because of illness or adverse personal circumstances, you must submit through WebSURF a medical or other written report (see Absence section below). Further details on incomplete assessment is provided at the UGS website (see above).
Absence
You must complete a WebSURF absence report for any significant absence from the University. Significant absence is defined by the Universitys Absence Policy. Details can be found here: http://senate.gla.ac.uk/academic/policies/student_absence_policy.html Supporting documentary evidence will be required and should be scanned electronically and linked to the WebSURF absence report.
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Cheating
Cheating in Examinations
The use of any unfair means in class and end-of-course examinations, or assisting anyone to do so, is always regarded as a disciplinary offence. If you are caught cheating in examinations, you will be referred to the Senate Assessors for Discipline.
XIV.
ASSESSMENT PROCEDURE
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awarded. The descriptors define the grade in terms of how well the candidate has demonstrated attainment of the Intended Learning Outcomes (ILOs). The verbal descriptors are generic and are intended to cover every course and degree programme in the University. Additional guidance is provided by the FBLS marking criteria for specific types and levels of assessment. Again, these are defined on the UGS website. Each item of assessment will also be given a secondary band within the primary grade. The combination of primary grade and secondary band defines a numerical score which can be used to aggregate and weight appropriately the assessed components of the course. The aggregation score derived from each assessed piece of work is multiplied by the appropriate relative weighting for that assessment (see Relative Weighting of Assessment) and summed to give an overall aggregation score. This is rounded to give an integer (0.5 is rounded up, while <0.5 is rounded down). The overall aggregation score is then converted to the equivalent grade (e.g. 17.6 is rounded up to 18 A, 11.2 is rounded down to 11 D).
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you can only take the examination at the next diet (e.g. the resits); special sittings cannot be arranged. If you are late for an examination, you will not be given extra time. Issues of assessment of more answers than are required by the examiners, the use of calculators and the use of dictionaries are addressed at the UGS website (see Quick Links in the section for students in Level 3).
Resit Examinations
If you are awarded a grade A, B, C or D at the first examination diet, you will not normally be allowed to resit the end-of-course examination. If you have an E, F, G or H grade, or Credit Withheld result, you will be entitled to resit the examination, but normally only once and at the next available diet; the grade points awarded as the result of the resit examination will be capped at 10. A resit of the Level 3 examination does not normally allow admission to Level 4. Coursework grades will be carried forward to the resit diet. You must register for resits with the Registry even if you had an MV at the first sitting. Resit examinations take place in August (check the timetable on the Registry webpage); bear this in mind when you are planning work or holidays. It is important to register for resits at the correct time so that proper arrangements can be made for the resit exams, including any special examination requirements for students with special needs or disabilities. If you are normally resident outside the UK, you may be permitted to take your resits at an approved centre in your home country, if you have difficulty in returning to the University to sit exams in vacations. For more information, please see the Registrys website. If you are resident within the UK, you are expected to take resits at the University of Glasgow.
Student Portfolios
The University requires that all coursework contributing to the final assessment for each course should be available for inspection by the External Examiner; this includes both assessed coursework and end-of-course examination scripts. Consequently, you must keep all marked coursework together in a portfolio and be prepared to submit this to the External Examiner, if necessary. You may find it useful to consult your portfolio of marked work before preparing further assessed coursework.
XV.
PROGRESSION TO LEVEL 4
The University regulations are to be found in the Faculty of Science section of the Calendar and in the Undergraduate Course Catalogue.
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You should not contact the Director of the Undergraduate School directly. The requirements for transfer from a Level-3 Designated Degree course to Level 4 Honours are stringent. More details are available from the UGS website (see Quick Links in the section for students in Level 3).
XVI.
E-mailing Staff
If you contact staff by e-mail, you should normally use your student e-mail address; it is FBLS policy that personal information should not be sent to non-University e-mail addresses. Please remember that you are e-mailing a member of staff, and do not use language more suited to communicating with your friends.
Notices to Students
You should check the course notice board and Moodle regularly for special announcements, e.g. seminars, timetable changes, job offers etc. Important messages to the class will also be sent to you at your student e-mail address; you should check your e-mail regularly and ensure that your Inbox does not exceed it allocated storage limits, thereby preventing you from receiving further inbound messages.
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Written Complaints
If you have a specific problem concerning an FBLS course or a member of staff, which you feel has not been adequately dealt with or cannot be dealt with through the SSLC or by discussion with the Programme Coordinator you should send a written complaint to: The Director of the Undergraduate School, UGS Office, Bower Building, University of Glasgow, Glasgow G12 8QQ. You should receive an acknowledgement of your complaint within 7 working days and an account of any action taken within 4 weeks of the receipt of your complaint.
XVIII.SESSION DATES
Dates for the current and following academic sessions are published by the University here: http://senate.gla.ac.uk/academic/sessiondates.html You must be available for teaching and assessments throughout these periods do not make holiday or work arrangements that may conflict with teaching or examinations. Note that the Spring diet examinations may be scheduled right up until the end of the designated examination periods and final results may be published sometime thereafter once the Facultys Boards of Examiners have met.
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Undergraduate School of Biomedical & Life Sciences Bower Building, University of Glasgow Glasgow, G12 8QQ, UK Tel: +44 (0)141-330 3994 Fax: +44(0)141-330 6093 Email: ugs@bio.gla.ac.uk Web: www.glasgow.ac.uk/faculties/fbls/us/
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