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FEMS Microbiology Letters 180 (1999) 297^304

Relationships between arginine degradation, pH and survival in


Lactobacillus sakei
Marie-Christine Champomier Verge©s a; *, Manuel Zun¬iga b ,
Franc°oise Morel-Deville a;1 , Gaspar Përez-Mart|¨nez b , Monique Zagorec a ,
S. Dusko Ehrlich c
a
Laboratoire de Recherches sur la Viande, Institut National de la Recherche Agronomique, Domaine de Vilvert,
78352 Jouy en Josas Cedex, France
b
Departamento de Biotecnologia, Instituto de Agroquimica y Technologia de Alimentos (C.S.I.C.), Poligono de la coma s/n,
Apartado de Correos 73, 46100 Burjassot, Valencia, Spain
c
Laboratoire de Gënëtique Microbienne, Institut National de la Recherche Agronomique, Domaine de Vilvert,
78352 Jouy en Josas Cedex, France

Received 8 August 1999; received in revised form 20 September 1999; accepted 21 September 1999

Abstract

Lactobacillus sakei is one of the most important lactic acid bacteria of meat and fermented meat products. It is able to
degrade arginine with ammonia and ATP production by the arginine deiminase pathway (ADI). This pathway is composed of
three enzymes: arginine deiminase, ornithine transcarbamoylase and carbamate kinase, and an arginine transport system. The
transcription of the ADI pathway is induced by arginine and subjected to catabolite repression. In order to understand the
physiological role of the degradation of this amino acid we investigated the growth of bacteria under various conditions. We
show that arginine degradation is responsible for an enhanced viability during the stationary phase when cells are grown under
anaerobiosis. Arginine is necessary for the induction of the ADI pathway but in association with another environmental signal.
Using a mutant of the L-lactate dehydrogenase unable to lower the pH we could clearly demonstrate that (i) low pH is not
responsible for cell death during the stationary phase, so survival is due to another factor than elevated pH, (ii) neither low pH
nor oxygen limitation is responsible for the induction of the ADI pathway together with arginine since the ldhL mutant is able
to degrade arginine under aerobiosis. ß 1999 Federation of European Microbiological Societies. Published by Elsevier
Science B.V. All rights reserved.

Keywords : Lactic acid bacteria; L-LDH ; arc operon; arcA (ADI) pathway ; Phosphoenol pyruvate phosphotransferase system;
Catabolyte repression; Acid stress; Meat

* Corresponding author; 1. Introduction


E-mail: verges@biotec.jouy.inra.fr
1
The arginine deiminase pathway of arginine deg-
Present address: Laboratoire de reproduction et dëvel-
oppement des plantes ENS-Lyon, 46 allëe d'Italie, 69364 radation (Fig. 1) is composed of three enzymes: ar-
Lyon cedex 07, France. ginine deiminase (ADI, EC 3.5.3.6), catabolic orni-

0378-1097 / 99 / $20.00 ß 1999 Federation of European Microbiological Societies. Published by Elsevier Science B.V. All rights reserved.
PII: S 0 3 7 8 - 1 0 9 7 ( 9 9 ) 0 0 4 9 2 - 9

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Fig. 1. Schematic representation of the arginine deiminase pathway (ADI). ADI: arginine deiminase; cOTC : catabolic ornithine transcar-
bamoylase ; CK: carbamate kinase.

thine transcarbamoylase (cOTC, EC 2.1.3.3) and car- In Gram-positive bacteria the genetic organisation is
bamate kinase (CK, EC 2.7.2.2). A fourth protein known for Clostridium perfringens [2] and B. lichen-
important for this pathway is a membrane arginine iformis [4]. The genes from Streptococcus sanguis
transport system (arginine/ornithine antiporter). This have also been cloned [11] but their sequence has
pathway, leading to ATP and ammonia production, not yet been reported.
is widely present among bacterial and archaebacteri- The four genes involved in arginine degradation:
al species such as Bacillus, Streptococcus, Clostridi- arcA (ADI), arcB (cOTC), arcC (CK) and arcD (the
um, Lactococcus, Pseudomonas, Mycoplasma and antiporter), usually form an operon, the organisation
Halobacterium [1^3] and can ful¢l various roles. In and transcription of which vary in di¡erent species.
Pseudomonas aeruginosa it is used exclusively under In P. aeruginosa the genes are cotranscribed in a
anaerobiosis as sole energy source for growth [1]. In single polycistronic transcript arcDABC, which is
Halobacterium salinarum it is involved in the fermen- then processed by a RNase [12]. The transcription
tative degradation of arginine [3] whereas in Bacillus of the arc operon is under the control of an Anr-
licheniformis it is involved in nitrogen regulation dependent promoter belonging to the Fnr-dependent
under anaerobiosis [4]. promoter family [9]. In H. salinarum the gene organ-
Several types of complex regulations of the argi- isation is arcRACB. Oxygen limitation yields di¡er-
nine degradation pathway have been observed ential induction of transcripts controlled by ArcR
among bacteria. In P. aeruginosa and B. licheniformis [3]. In B. licheniformis, the gene cluster is arc-
oxygen is the main factor controlling its expression. RABDC. arcR encodes an ArgR protein with func-
In some lactic acid bacteria such as Carnobacterium tions similar to the Escherichia coli ArgR [4]
and Streptococcus, relationships with sugar metabo- Among lactic acid bacteria Lactobacillus sakei,
lism and pH have been investigated, and repression formerly called L. sake [13], is one of the main spe-
by glucose was observed [5^8]. cies belonging to the natural £ora of fresh vacuum-
The genes encoding the enzymes of the ADI path- packed meat. It is also used as starter in the meat
way have been most extensively studied in P. aeru- fermentation process mainly for its ability to rapidly
ginosa [9], H. salinarum [3] and Rhizobium etli [10]. metabolise sugars resulting in a pH drop that pre-

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vents the development of spoilage micro-organisms with erythromycin 5 Wg ml31 for the propagation of
and ensures a right ¢rmness of the products. The the ptsI and arc mutant strains. Aerobiosis was ob-
ability of L. sakei to degrade arginine by the ADI tained by shaking £asks at 150 rpm and anaerobiosis
pathway was reported many years ago but this prop- was obtained by blowing nitrogen according to Hun-
erty was mainly used as a di¡erentiating feature be- gate [19]. Growth was followed by measuring optical
tween L. sakei and Lactobacillus curvatus, the closely density at 600 nm and by the determination of col-
related species also found in meat and meat products ony forming units after plating diluted aliquots on
[14]. The presence of the ¢rst two enzymes (ADI and MRS agar plates. The initial pH of the MCD me-
cOTC) in L. sakei was shown [15] but the physiolog- dium is 6.50. Values obtained after growth and re-
ical role of this pathway has not been extensively ported in the ¢gures represent the mean þ S.D. of at
studied yet. least three independent experiments.
In a previous work we have cloned and sequenced
the arc operon of L. sakei [16]. The gene order is 2.2. Arginine deiminase activities
arcABCTD. Mutants in the four genes involved in
the ADI pathway were constructed [16]. Upstream of These were determined as previously described
the arcA gene a CRE (catabolite responsive element) [16].
sequence was found indicating a regulation by catab-
olite repression. However, neither Fnr-like nor Anr-
like boxes were found upstream of arcA. In the 3. Results
present study we investigated the physiological role
of arginine degradation by the ADI pathway. In or- Previous studies have shown that L. sakei is aux-
der to explain the role of this pathway and its regu- otrophic for arginine and is unable to grow on argi-
lations we used mutants in the arc operon along with nine as sole carbon source [15]. Thus the degradation
a ptsI mutant and an ldhL mutant. of arginine needs the presence of glucose as a carbon
source but high glucose concentrations repress argi-
nine degradation. Arginine degradation can be ob-
2. Materials and methods served only when arginine is present in the growth
medium at 3 g l31 [15]. However, these studies made
2.1. Strains and growth conditions use of complex media, making detailed interpreta-
tions di¤cult.
The origin of strains is listed in Table 1. All L. In the present study we used a chemically de¢ned
sakei strains were routinely grown at 30³C on MRS medium [18] supplemented with two carbon sources
medium [17]. MCD medium [18] containing 0.05 or present in meat (glucose and ribose), at two arginine
3 g l31 arginine and 1 g l31 sugar was used for concentrations (0.05 g l31 is the minimal concentra-
physiological studies. The media were supplemented tion required for growth; 3 g l31 is the concentration
that fully induces the ADI pathway). In addition, the
Table 1 e¡ects of aerobiosis and anaerobiosis were investi-
Origin of L. sakei strains gated. We also tested the behaviour of RV2000, a
Strain Description Reference mutant of the L-lactate dehydrogenase (L-LDH),
23K Wild-type strain Laboratory collection which is unable to lower the pH of the medium
plasmid-cured [23] [20]. The growth and the viability of bacteria were
followed as well as the pH variations re£ecting argi-
RV2000 23K ldhL: :Cma [20]
nine degradation via the ADI pathway.
RV1000 23K ptsI: :pRV10 [22]
RV4000 23K acaA: :pRV401 [16] We tested di¡erent growth conditions regarding
RV4010 23K arcB: :pRV402 [16] arginine concentration (0.05 g l31 and 3 g l31 ), aero-
RV4020 23K arcC: :pRV403 [16] biosis or anaerobiosis, with glucose or ribose as the
RV4030 23K arcD: :pRV404 [16] carbon source. The results are presented in Fig. 2.
a
Cm: chloramphenicol resistance gene of pC194. Under aerobiosis on glucose (Fig. 2A) viable cells

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300 M.-C. Champomier Verge©s et al. / FEMS Microbiology Letters 180 (1999) 297^304

Fig. 2. Growth of L. sakei strain 23K in MCD medium containing glucose 1 g l31 (circles) or ribose 1 g l31 (triangles) as carbon sources.
A low concentration of arginine (0.05 g l31 , ¢lled symbols) or an inducing concentration (3 g l31 , open symbols) was added. Bacteria
were grown under aerobiosis (A) or anaerobiosis (B). Experiments were repeated several times and a representative experiment is shown.
Standard deviation was less than 5% of the mean for experiments under anaerobiosis and less than 10% under aerobiosis. The ¢nal pH
measured after 48 h cultivation is indicated.

diminished soon after growth stopped, whatever the after the pH drop due to the ribose degradation,
arginine concentration. The ¢nal pH was 5.50 re£ect- ammonia production led to a pH rise.
ing the production of acid from glucose fermenta- Under anaerobiosis (Fig. 2B), both on glucose and
tion. On ribose under aerobiosis, the growth rate on ribose, the e¡ect of inducing concentration of
was slower and survival was observed during station- arginine was more pronounced. Survival was better
ary phase. The ¢nal pH reached 6.88, indicating that both on ribose and on glucose when arginine 3 g l31

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M.-C. Champomier Verge©s et al. / FEMS Microbiology Letters 180 (1999) 297^304 301

Fig. 3. Growth of L. sakei strain RV4000 in MCD medium containing ribose 1 g l31 under anaerobiosis. A low arginine (0.05 g l31 , ¢lled
symbols) or an inducing concentration (3 g l31 , open symbols) was added. Experiments were repeated several times and a representative
experiment is shown. Standard deviation was less than 5%. The ¢nal pH measured after 48 h cultivation is indicated.

was added. In both cases, the ¢nal pH was higher than on glucose and was correlated with the higher
than the initial pH of the medium, suggesting ammo- ¢nal pH (7.38 on ribose versus 6.73 on glucose).
nia production resulting from arginine degradation. These results suggest that a better survival in the
As under aerobiosis, survival was better on ribose stationary phase is linked to the degradation of ar-

Fig. 4. Growth of L. sakei strain RV1000 in MCD medium containing glucose 1 g l31 under anaerobiosis. A low concentration of argi-
nine (0.05 g l31 , ¢lled symbols) or an inducing concentration (3 g l31 , open symbols) was added. Experiments were repeated several times
and a representative experiment is shown. Standard deviation was less than 5% of the mean. The ¢nal pH measured after 48 h cultivation
is indicated.

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ginine correlated with an increased pH value. Indeed higher than in the wild-type strain, for which pH was
all the mutants in the arc operon were impaired in 6.73 when grown in the same conditions. These re-
survival during the stationary phase whether arginine sults support a catabolite repression e¡ect of glucose
was added or not as shown for the arcA mutant which is abolished in the ptsI mutant. Furthermore,
(RV4000) in Fig. 3. no drop in population with arginine 0.05 g l31 was
A better survival on ribose than on glucose might observed but the pH was still low (5.50), suggesting a
re£ect a repression of the ADI pathway on glucose. di¡erent metabolism of glucose in the ptsI mutant.
The presence of a CRE element upstream of arcA, All these results clearly indicate that the degrada-
responsible for the catabolite repression of the tran- tion of arginine via the ADI pathway is correlated
scription of the arc operon, might explain why on with an enhanced viability under anaerobiosis. This
glucose the ADI pathway is not active [16]. Carbon role has been mentioned previously for other species
catabolite repression requires the CcpA protein and but it was not clearly demonstrated whether elevated
the phosphoenol pyruvate phosphotransferase sys- pH per se (due to ammonia production by the ADI
tem (PTS) [21]. A mutant of enzyme I of the PTS pathway) was responsible for this enhanced viability.
was previously constructed. Although this mutant In order to investigate the putative role of pH in the
(RV1000) does not possess a functional PTS, it is regulation of the ADI pathway and the survival of
able to grow on glucose by a PTS-independent trans- L. sakei during stationary phase, we used a mutant
port system [18,22]. RV1000 was then tested for its de¢cient in L-LDH activity. This mutant does not
growth and survival on glucose. We could expect, as produce lactate and does not lower the pH of the
was shown in several other bacteria, that in RV1000 medium below 6.20 [20]. As shown in Fig. 5, when
catabolite repression is abolished. Indeed, RV1000 an inducing arginine concentration was omitted, the
seemed to have a higher arginine degradation level cfu observed during stationary phase strongly de-
than the wild-type strain in the presence of glucose creased although the pH was high (6.90). This sug-
(Fig. 4). The ¢nal pH in the medium with arginine gests that the pH drop leading to the low pH value
was 7.20, which suggests that arginine degradation is after glucose consumption is not the factor respon-

Fig. 5. Growth of L. sakei strain RV2000 in MCD medium containing glucose 1 g l31 under aerobiosis. A low concentration of arginine
(0.05 g l31 , ¢lled symbols) or an inducing concentration (3 g l31 , open symbols) was added. Experiments were repeated several times and
a representative experiment is shown. Standard deviation was less than 10% of the mean. The ¢nal pH measured after 48 h cultivation is
indicated.

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M.-C. Champomier Verge©s et al. / FEMS Microbiology Letters 180 (1999) 297^304 303

sible for cell death after exponential growth. More- longer repressed by glucose. Such a repression by
over, when an inducing arginine concentration was glucose has long been reported for various species
added, the ldhL mutant, like the wild-type, has an except for some Carnobacterium strains which are
increased cell viability during the stationary phase reported to degrade arginine by the ADI pathway
certainly linked to arginine degradation as can be even at high glucose concentrations [6]. In L. sakei
deduced from the high pH value (8.35). These data it lightens the role of the PTS in the catabolite re-
seem to indicate that the low pH reached after ex- pression mechanism. Concerning anaerobiosis we
ponential growth is not responsible per se for cell could demonstrate that the lack of oxygen per se is
death. The protective e¡ect of arginine degradation not responsible for induction of the arc operon
is not due to elevated pH since this strain, which which is di¡erent from what was observed in P. aer-
does not lower the pH, has a low viability during uginosa [9], R. etli [10] or B. licheniformis [4]. In H.
the stationary phase and needs to degrade arginine salinarum, the induction by oxygen limitation was
to survive. Moreover, in mutant RV2000, this argi- di¡erent for the di¡erent transcripts [3]. In L. sakei
nine degradation also took place during growth arginine degradation could take place under aerobio-
under aerobiosis revealing that lack of oxygen is sis but only when cells were grown in the presence of
not the factor responsible for the induction of the ribose as the carbon source or in a ldhL mutant. In
ADI pathway, but rather another signal that might this mutant, the end products resulting from glucose
be linked to carbohydrate metabolism. The behav- catabolism are di¡erent than in the wild-type strain
iour of this strain indicates that the pH drop might [20]. Furthermore, ribose metabolism also leads to
not be this signal. Furthermore, ADI measurements di¡erent intracellular compounds and end products
con¢rmed that arginine degradation was associated since ribose is catabolised through the phosphoceto-
with survival. For the wild-type, maximum activities lase pathway. The signal responsible for ADI induc-
were obtained when cells were grown under anaero- tion might thus be linked rather to the metabolic
biosis with arginine 3.19 þ 0.03 U under anaerobiosis state of the cells. Intracellular ATP, NADH or other
versus 0 under aerobiosis, whereas RV2000 had ac- intermediate metabolites pools might be good candi-
tivity under both aerobiosis (2.55 þ 0.31 U) and date signals.
anaerobiosis (8.88 þ 0.88 U). The enhanced viability might be attributed to the
pH rise due to ammonia production by the ADI
pathway as mentioned for S. sanguis [8]. These au-
4. Discussion thors showed that the enzymes of the ADI pathway
have their optimal pH of activity at lower values
We have previously shown that transcription of than other intracellular enzymes. The activity of
the arc genes encoding the ADI pathway is induced the ADI catabolic pathway was supposed to protect
by arginine and is repressed by carbon catabolite streptococci of the oral cavity from an acid environ-
repression [16]. In this work we show that arginine ment. Nevertheless, these authors could demonstrate
degradation by L. sakei is clearly associated with a that the beginning of arginine degradation was not
higher survival during the stationary phase since (i) part of the acid-adaptive response [5]. In L. sakei,
the survival is correlated with the conditions of ex- this protective role against cell death cannot be re-
pression of the ADI pathway and (ii) survival is lated only to pH protection, since the ldhL mutant
abolished in the arc mutants. This degradation oc- that was unable to lower the pH below 6.20 also
curs through the ADI pathway and no other arginine needs arginine degradation to survive. Moreover, ar-
degradation route could be detected, since arc mu- ginine degradation can take place even when the pH
tants could no longer degrade arginine and survive. is still high and no clear-cut correlation between low
The presence of arginine is necessary to induce this pH and cell death was observed. Since ATP is pro-
survival but another environmental factor is neces- duced from arginine degradation this indicates that
sary to promote this degradation. Catabolite repres- the energy level is the triggering factor for survival
sion of the arc operon was con¢rmed by the use of a rather than the pH.
ptsI mutant in which arginine catabolism was no The environmental conditions leading to the ex-

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pression of the ADI pathway in L. sakei are: low [10] D'Hooghe, I., Vander Wauven, C., Michiels, J., Tricot, C., de
Wilde, P., Vanderleyden, J. and Stalon, V. (1997) The arginine
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