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10) What is a mitochondria? How many membranes does it have? Are they
both permeable?
An organelle that contains the apparatus responsible for aerobic oxidation of
nutrients; site of oxidative phosphorylation in cell; ADP is phosphorylated to give
ATP- electron transport and ATP synthesis are strongly coupled; 2 membranes;
inner membrane is highly impermeable (this allows for oxidative
phosphorylation)
12) Which step of the Krebs cycle occurs in the inner membrane?
Succinate----fumarate FADH2 is generated
Rest of cycle occurs in matrix
13) List the different kinds of redox centers found in the respiratory chain.
Complex I: NADH-CoQ oxidoreductase
Complex II: Succinate-CoQ oxidoreductase
Complex III: CoQH2-cytochrome c oxidoreductase
Complex IV: Cytochrome oxidase (?)
17) Show how FAD or FMN can transfer one or two electrons. (you don’t have
to
know this but its good to try)
** see notes***
23) What electron carriers are non-heme iron proteins associated with?
24) What do copper ions do in the respiratory chain? Where are they found?
Copper ions are intermediate electron acceptors that lie between the two a-type
cytochromes in COMPLEX IV
27) Name five different types of electron carrier found in the respiratory
chain.
NADH, FADH2, CoQ, Cyt C, Fe-S
29) Does NADH produced in the cytoplasm during glycolysis enter the matrix?
If not
how does this NADH get to the respiratory chain?
NADH cannot enter the matrix
2 shuttle mechanisms to transport NADH into inner membrane (glycerol
phosphate shuttle(GAP)-- forms FADH2 inside inner membrane = 1.5 ATP) &
(malate-aspartate shuttle-- forms NADH inside inner membrane = 2.5 ATP).
FADH2(from GAP) and NADH(from malate) then go to electron transport chain.
30) Does ATP freely diffuse out of the matrix into the cytoplasm?
36) How do the redox potentials of the various electron carriers vary?
Complex I = -81 kJ mol-1 ** strongly exergonic and sufficient to drive the
phosphorylation of ADP
Complex II = -13.5 kJ mol-1 no protons are pumped
Complex III = -34.2 kJ mol-1 **strongly exergonic & sufficient to drive the
phosphorylation of ADP
Complex IV = -110 kJ mol-1 ** catalyzes final step of e- transport (from cyt C to oxygen)
64) How is the free energy released by electron transport used to form ATP?
Protons are ejected in only one direction (into inner membrane space) by electron
carriers.
66) How is ATP generated from proton flow?
ATP synthase couples the proton gradient to ATP synthesis. (this protein is not
part of the ETC) ATP production depends on ion channels through the inner
membrane. Protons flow back into the matrix through the Fo channel of ATP
synthase (energy in gradient drives protons back) and the F1 unit forms ATP.
**conformational coupling mech: proton flux drives the release of tightly
bound ATP
57) What are the polar groups attached to the phosphatidic acid?
**see Handout 8 page 4 for the pictures of polar groups**
Phosphatidyl ethanoloamine
phosphatidyle choine (PC)
phosphatidyle serine (PS)
inositol
cardiolipin
They allow for different membrane properties. (PC has a positive charge, PS has
a negative charge, cerebrosides have no charge.) The two bilayers may have
different lipid compositions, e.g., glycolipids (sugars always on the outside of the
cell in the external aqueous environment)
A two-dimensional fluid; it gives cells flexibility and self sealing potential (cell
division). Also involved in endo- and exocytosis.
The ability of a molecule to diffuse through a lipid bilayer is related to its fat
solubility.
Strongly polar molecules such as ions traverse slowly; large more weakly polar
molecules (glucose) require a transporter but are still slow; ethanol, glycerol=
fast.
Water molecules must be stripped off of polar/ionized groups (this is unfavorable)
Almost impermeable to ions (slow leakage does occur)
Water molecules (despite being polar) pass through the lipid, sufficiently easy for
the needs of the cell.
Some cells contain aquaponin (renal cells)
Gases such as oxygen readily diffuse.
The storage form of fatty acids (not found in membranes because they have no
polar head groups and therefore can only form oil droplets). Three molecules of
fat are esterified to the three hydroxyl groups of flycerol. TAGS are suitable as
food.
Proteins can be inserted into membranes provided they have the requisite
properties.
Gated pores or channels Na+, K+, Ca2+ - tansport signals for specific ions that
open/close on receipt of a signal (voltage or ligand gated)
The overall delta G for coupled reactions is the arithmetic sum of the delta G values of
the component reactions. A favorable negative change in free energy (value is
negative) is required for the rxn to occur.
~12.5 kJ mol-1
~33.5 kJ mol-1