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Confounding Evidence
( to the Great Chain of Being Concept)
• Biogeography
• Comparative anatomy
• Geologic discoveries
Biogeography
Acrocanthosaurus Skull
EQUATOR
Galapagos
Islands
Galapagos
Islands Darwin
Wolf
Volcanic islands
far off coast of Pinta
Ecuador
Marchena Genovesa
species that
Fernandia
Santa Cruz
Termites……..
Inference 1
Like all scientific theories it represents the best that science has to
offer, but still it must be tested with any new scientific information
and may be modified accordingly.
• Mutation
• Crossing over at meiosis I
• Independent assortment
• Fertilization
• Change in chromosome number or
structure
Crossing Over
Genetic Equilibrium
Frequency of allele A = p
Frequency of allele a = q
p+q=1
Punnett Square
p A q a
p A AA(p2) Aa(pq)
q a Aa(pq) aa(q2)
Frequencies in Gametes
Gametes: A A A a a a
(q2)1/2 = q = .20
through 90 aa butterflies
White wings
420 Aa butterflies
90 aa butterflies
NO CHANGE
420 Aa butterflies
90 aa butterflies
NO CHANGE
Natural Selection
Number of individuals
in the population
Selection
Number of individuals
• Allele frequencies
in the population
shift in one
direction
Range of values for the trait at time 2
Number of individuals
in the population
Global Problem
Antibiotic Resistance
Number of individuals
in the population
Selection
• Intermediate forms
are favored and Range of values for the trait at time 1
extremes are
eliminated
ends of the
in the population
range of
variation are
favored Range of values for the trait at time 2
• Intermediate
Number of individuals
in the population
forms are
selected against
Range of values for the trait at time 3
African Finches
• Selection favors 60 nestlings
Number of individuals
large or very small survivors
bills 40
• Birds with 30
intermediate-sized
20
bill are less
effective feeders 10
homozygotes
1 in 100-180
1 in 64-100
more than 1 in 64
Gene Flow
• Physical flow of alleles into a population
• Tends to keep the gene pools of
populations similar
• Counters the differences that result from
mutation, natural selection, and genetic
drift
Genetic Drift
1.0
AA in five populations
0.5
allele A lost
from four
populations
0
1 5 10 15 20 25 30 35 40 45 50
Generation
(25 stoneflies at the start of each)
Computer Simulation
1.0
0.5
allele A
neither
lost nor
fixed
0
1 5 10 15 20 25 30 35 40 45 50
Generation
(500 stoneflies at the start of each)
Bottleneck
• A severe reduction in population size
• Causes pronounced drift
• Example
– Elephant seal population hunted down to just
20 individuals
– Population rebounded to 30,000
– Electrophoresis revealed there is now no
allele variation at 24 genes
Bottleneck Effect
• All Cheetahs are closely related as a
result of a recent bottleneck.
Founder Effect
• Effect of drift when a small number of
individuals starts a new population
• By chance, allele frequencies of founders
may not be same as those in original
population
• Effect is pronounced on isolated islands
Catalina Island Fox
Inbreeding
• Nonrandom mating between related
individuals
• Leads to increased homozygosity
• Can lower fitness when deleterious
recessive alleles are expressed
• Amish, cheetahs
Atavistic Structures
• “Atavistic structures in individual members
of a species arise from a defect in the
individual's genetic development. A gene
may not turn on (or off) at the right time.”