Professional Documents
Culture Documents
Francisco G. La Rosa, MD
Francisco.LaRosa@uchsc.edu
Assistant Professor, Department of Pathology
University of Colorado at Denver Health Science Center, Denver, Colorado
Specimen Collection
Macroscopic Examination
Chemical Analysis (Urine Dipstick)
Microscopic Examination
Culture (not covered in this lecture)
Cytological Examination
Macroscopic Examination
Odor:
Ammonia-like: (Urea-splitting bacteria)
Foul, offensive: Old specimen, pus or inflammation
Sweet: Glucose
Fruity: Ketones
Maple syrup-like: Maple Syrup Urine Disease
Color:
Colorless Diluted urine
Deep Yellow Concentrated Urine, Riboflavin
Yellow-Green Bilirubin / Biliverdin
Red Blood / Hemoglobin
Brownish-red Acidified Blood (Actute GN)
Brownish-black Homogentisic acid (Melanin)
Macroscopic Examination
Turbidity:
Typically cells or crystals.
Cellular elements and bacteria will clear by centrifugation.
Crystals dissolved by a variety of methods (acid or base).
Microscopic examination will determine which is present.
Chemical Analysis
Chemical Analysis
Urine Dipstick
Glucose
Bilirubin
Ketones
Specific Gravity
Blood
pH
Protein
Urobilinogen
Nitrite
Leukocyte Esterase
The Urine Dipstick:
Glucose
Chemical Principle
Negative
Glucose Oxidase
Trace (100 mg/dL)
Glucose + 2 H2O + O2 --->
+ (250 mg/dL) Gluconic Acid + 2 H2O2
Significance
Diabetes mellitus.
Renal glycosuria.
Limitations
Interference: reducing agents, ketones.
Only measures glucose and not other sugars.
Renal threshold must be passed in order for glucose to spill
into the urine.
Other Tests
CuSO4 test for reducing sugars.
Detection of Reducing Sugars* by CuSO4
Sugar Disease(s)
- Galactose Galactosemias
- Fructose Fructosuria, Fructose
Intolerance, etc.
- Lactose Lactase Deficiency
- Pentoses Essential Pentosuria
- Maltose Non-pathogenic
++
trace
Negative
200 400 600 800 1000
Blood Glucose (mg/dL)
The Urine Dipstick:
Bilirrubin
Significance
- Increased direct bilirubin (correlates with urobilinogen and serum
bilirubin)
Limitations
- Interference: prolonged exposure of sample to light
- Only measures direct bilirubin--will not pick up indirect bilirubin
Other Tests
- Ictotest (more sensitive tablet version of same assay)
- Serum test for total and direct bilirubin is more informative
The Urine Dipstick:
Ketones
Negative
Chemical Principle
Trace (5 mg/dL)
Significance
- Diabetic ketoacidosis
- Prolonged fasting
Limitations
- Interference: expired reagents (degradation with exposure to
moisture in air)
- Only measures acetoacetate not other ketone bodies (such as in
rebound ketosis).
Other Tests
- Ketostix (more sensitive tablet version of same assay)
- Serum glucose measurement to confirm DKA
The Urine Dipstick:
Specific Gravity
1.000
Chemical Principle
1.005
X+ + Polymethyl vinyl ether / maleic anhydride
1.010 --------------->
X+-Polymethyl vinyl ether / maleic anhydride + H+
1.015
H+ interacts with a Bromthymol Blue indicator to
1.020 form a colored complex.
Significance
- Diabetes insipidus
Limitations
- Interference: alkaline urine
- Does not measure non-ionized solutes (e.g. glucose)
Other Tests
- Refractometry
- Hydrometer
- Osmolality measurement (typically used with water deprivation test)
The Urine Dipstick:
Blood
Negative
Chemical Principle
Trace (non-hemolyzed)
Lysing agent to lyse red blood cells
Moderate (non-hemolyzed)
Diisopropylbenzene dihydroperoxide +
Tetramethylbenzidine
Trace (hemolyzed)
Heme
------------> Colored Complex
+ (weak)
Significance
- Hematuria (nephritis, trauma, etc)
- Hemoglobinuria (hemolysis, etc)
- Myoglobinuria (rhabdomyolysis, etc)
Limitations
- Interference: reducing agents, microbial peroxidases
- Cannot distinguish between the above disease processes
Other Tests
- Urine microscopic examination
- Urine cytology
The Urine Dipstick:
pH
5.0
Significance
- Acidic (less than 4.5): metabolic acidosis, high-protein diet
- Alkaline (greater than 8.0): renal tubular acidosis (>5.5)
Limitations
- Interference: bacterial overgrowth (alkaline or acidic),
run over effect effect of protein pad on pH indicator pad
Other Tests
- Titrable acidity
- Blood gases to determine acid-base status
pH Run Over Effect
Glucose
Bilirubin
Ketones
Specific Gravity Buffers from the protein area of
the strip (pH 3.0) spill over to the
Blood pH area of the strip and make the
pH pH of the sample appear more
acidic than it really is.
Protein
Urobilinogen
Nitrite
Leukocyte Esterase
The Urine Dipstick:
Protein
Chemical Principle
Protein Error of Indicators Method
Negative Pr
H Pr
H Pr
Trace H
Pr Pr
+ (30 mg/dL) H H
H Pr
++ (100 mg/dL) Tetrabromphenol Blue +
H+ H H
+
(buffered to pH 3.0)
H + +
+++ (300 mg/dL) Pr Pr H+ H
Pr
Pr Pr
++++ (2000 mg/dL) Pr
Read at 60 seconds
RR: Negative
Causes of Proteinuria
Functional Renal
- Severe muscular exertion - Glomerulonephritis
- Pregnancy - Nephrotic syndrome
- Orthostatic proteinuria - Renal tumor or infection
Pre-Renal Post-Renal
- Fever - Cystitis
- Renal hypoxia - Urethritis or prostatitis
- Hypertension - Contamination with vaginal
secretions
Nephrotic Syndrome (> 3.5 g/dL in 24 h)
Primary
- Lipoid nephrosis (severe)
- Membranous glomerulonephritis
- Membranoproliferative glomerulonephritis
Secondary
- Diabetes mellitus (Kimmelsteil-Wilson lesions)
- Systemic lupus erythematosus
- Amyloidosis and other infiltrative diseases
- Renal vein thrombosis
Uses and Limitations of Urine Protein Detection
Significance
- Proteinuria and the nephrotic syndrome.
Limitations
- Interference: highly alkaline urine.
- Much more sensitive to albumin than other proteins
(e.g., immunoglobulin light chains).
Other Tests
- Sulfosalicylic acid (SSA) turbidity test.
- Urine protein electrophoresis (UPEP)
- Bence Jones protein
Proteins in Normal Urine
Albumin 40% 60 mg
Tamm-Horsfall 40% 60 mg
Immunoglobulins 12% 24 mg
Secretory IgA 3% 6 mg
Other 5% 10 mg
4 mg/dL
Read at 60 seconds
8 mg/dL RR: 0.02-1.0 mg/dL
Uses and Limitations of Urobilinogen Detection
Significance
- High: increased hepatic processing of bilirubin
- Low: bile obstruction
Limitations
- Interference: prolonged exposure of specimen to oxygen
(urobilinogen ---> urobilin)
- Cannot detect low levels of urobilinogen
Other Tests
- Serum total and direct bilirubin
The Urine Dipstick:
Nitrite
Chemical Principle
Acidic
Negative Nitrite + p-arsenilic acid -------> Diazo compound
Diazo compound + Tetrahydrobenzoquinolinol
Positive
----------> Colored Complex
Read at 60 seconds
RR: Negative
Uses and Limitations of Nitrite Detection
Significance
- Gram negative bacteriuria
Limitations
- Interference: bacterial overgrowth
- Only able to detect bacteria that reduce nitrate to nitrite
Other Tests
- Correlate with leukocyte esterase and
- Urine microscopic examination (bacteria)
- Urine culture
The Urine Dipstick:
Leukocyte Esterase
Chemical Principle
Derivatized pyrrole amino acid ester
Negative
Esterases
------------> 3-hydroxy-5-phenyl pyrrole
Trace
Significance
- Pyuria
- Acute inflammation
- Renal calculus
Limitations
- Interference: oxidizing agents, menstrual contamination
Other Tests
- Urine microscopic examination (WBCs and bacteria)
- Urine culture
Microscopic Examination
General Aspects
Preservation
- Cells and casts begin to disintegrate in 1 - 3 hrs. at room temp.
- Refrigeration for up to 48 hours (little loss of cells).
Specimen concentration
- Ten to twenty-fold concentration by centrifugation.
Types of microscopy
- Phase contrast microscopy
- Polarized microscopy
- Bright field microscopy with special staining
(e.g., Sternheimer-Malbin stain)
Microscopic Examination
Abnormal Findings
> 10 bacteria
Per Low Power Field (LPF) (200x)
> 3 hyaline casts or > 1 granular cast
> 10 squamous cells (indicative of contaminated specimen)
Any other cast (RBCs, WBCs)
Presence of:
Fungal hyphae or yeast, parasite, viral inclusions
Pathological crystals (cystine, leucine, tyrosine)
Large number of uric acid or calcium oxalate crystals
Microscopic Examination
Cells
Erythrocytes
- Dysmorphic vs. normal (> 10 per HPF)
Leukocytes
- Neutrophils (glitter cells) More than 1 per 3 HPF
- Eosinophils Hansel test (special stain)
Epithelial Cells
- Squamous cells Indicate level of contamination
- Renal tubular epithelial cells Few are normal
- Transitional epithelial cells Few are normal
Bacteria
- Bacteriuria More than 10 per HPF
Yeasts
- Candidiasis Most likely a contaminant
but should correlate with
clinical picture.
Viruses
- CMV inclusions Probable viral cystitis.
Microscopic Examination
Bacteria
Microscopic Examination
Yeasts
Microscopic Examination
Yeasts
Microscopic Examination
Cytomegalovirus
Microscopic Examination
Casts
Degenerating Casts:
- Granular casts Nonspecific (Tamm-Horsfall protein)
- Hyaline casts Nonspecific (Tamm-Horsfall protein)
- Waxy casts Nonspecific
- Fatty casts Nephrotic syndrome
(oval fat body casts)
Microscopic Examination
Casts
Microscopic Examination
RBCs Cast - Histology
Microscopic Examination
RBCs Cast
Microscopic Examination
RBCs Cast - Histology
Microscopic Examination
WBCs Cast
Microscopic Examination
Tubular Epith. Cast
Microscopic Examination
Tubular Epith. Cast
Microscopic Examination
Granular Cast
Microscopic Examination
Hyaline Cast
Microscopic Examination
Waxy Cast
Microscopic Examination
Fatty Cast
Significance of Cellular Casts
Erythrocyte Casts
Leukocyte Casts
Bacterial Casts
Single Erythrocytes
Single Leukocytes
Single Bacteria
- Urate
Ammonium biurate
Uric acid
- Triple Phosphate
- Calcium Oxalate
- Amino Acids
Cystine
Leucine
Tyrosine
- Sulfonamide
Microscopic Examination
Calcium Oxalate Crystals
Microscopic Examination
Calcium Oxalate Crystals
Dumbbell Shape
Microscopic Examination
Triple Phosphate Crystals
Microscopic Examination
Urate Crystals
Microscopic Examination
Leucine Crystals
Microscopic Examination
Cystine Crystals
Microscopic Examination
Ammonium Biurate Crystals
Microscopic Examination
Cholesterol Crystals
Cytological Examination
Staining:
Papanicolau
Wrights
Immunoperoxidase
Immunofluorescence
Cytology: Normal
Cytology: Normal
Cytology: Reactive
Cytology: Reactive
Cytology: Polyoma (Decoy Cell)
Cytology: Polyoma (Decoy Cell)
Immunoperoxidase to SV40 ag
Cytology: TCC Low Grade
Cytology: TCC Low Grade
Cytology: TCC High Grade
Cytology: TCC High Grade
Cytology: Squamous Cell Ca.
Cytology: Renal Cell Ca.
Cytology: Prostatic Carcinoma
Urinalysis
Disease Diagnosis
Diluted urine, request a voided urine in the morning
Case 1 If persisting low SG, possible diabetes insipida
A microscopic may give negative results
Glucose Negative
Bilirubin Negative
A 35-year old man undergoing routine pre
employment drug screening.
Ketones Negative
Physical characteristics: Clear.
S.G. 1.001 Microscopic: Not performed.
Drugs Identified: None.
Blood Negative
Questions:
pH 5.5
Glucose Negative
Bilirubin +++
A 42-year old woman presents with dark urine
Ketones Negative
Physical characteristics: Red-brown.
S.G. 1.020 Microscopic: Not performed.
Blood Negative
Questions:
pH 5.5
- What is your differential diagnosis?
Protein Negative - Could this be a case of hemolytic anemia?
- How would you rule it out?
Urobilinogen 0.2 mg/dL - What tests would you order next? Why?
Nitrite - Would you order a microscopic analysis?
Negative
L.E. Negative
Possible UTI, request culture and antibiotic sensitivity
Case 3
Negative Nitrite test: Gram positive bacteria
Lower SG may show less number of cells and bacteria
Un-common diagnosis in this type of patient
Glucose Negative
A 42-year old man presents painful urination
Bilirubin Negative
Glucose ++
Bilirubin Negative
L.E. Negative
Glomerulonephritis
Case 5 RBC casts reveals renal cortex involvement
RBC cast are not always present in GN
Glucose Negative
8-year old boy presents with discolored urine
Bilirubin Negative
Glucose Negative
22-year old man presenting for a routine
Bilirubin Negative
physical required for admission to medical
Ketones Negative school
L.E. Negative
Common Findings in:
Acute Tubular Necrosis
Glucose
Bilirubin
Ketones
Urobilinogen
Nitrite
L.E.
Common Findings in:
Acute Glomerulonephritis
Glucose
Bilirubin
Ketones
Microscopic:
S.G.
Urobilinogen
Nitrite
L.E.
Common Findings in:
Chronic Glomerulonephritis
Glucose
Bilirubin
Ketones
Decreased
Microscopic:
S.G.
Blood Increased
Pathological casts
pH (broad waxy casts, RBCs)
Protein Increased
Urobilinogen
Nitrite
L.E.
Common Findings in:
Acute Pyelonephritis
Glucose
Bilirubin
Ketones Microscopic:
S.G.
Bacteria
Blood
Leukocytes
pH Leukocyte, granular, and
Protein Trace
waxy casts
Renal tubular epithelial
Urobilinogen
cell casts
Nitrite Positive
L.E. Positive
Common Findings in:
Nephrotic Syndrome
Glucose
Bilirubin
Ketones
S.G. Microscopic:
Blood
Oval fat bodies
pH
Fatty casts
Protein ++++ Waxy casts
Urobilinogen
Nitrite
L.E.
Common Findings in:
Eosinophilic Cystitis
Glucose
Bilirubin
Ketones
S.G. Microscopic:
Blood +
Numerous eosinophils
pH
(Hansels stain)
Protein NO significant casts.
Urobilinogen
Nitrite
L.E.
Common Findings in:
Urothelial Carcinoma
Glucose
Bilirubin
Ketones
S.G. Microscopic:
Blood +
Malignant cells on
pH
urine cytology (urine
Protein sample should be submitted
separately to cytology, void
Urobilinogen
or 24 hrs.)
Nitrite
L.E.
Acknowledgment: