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Microscopy
Yvona Ward
Cell and Cancer Biology Branch
OUTLINE
1. Immunofluorescent Staining
2. Conventional Fluorescent Microscopy
3. Confocal Microscopy
4. Applications
Immunofluorescent Staining
Immunofluorescent staining makes use of antibodies to locate and
identify patterns of protein expression in cells.
Cell Permeabilization
1. Incubate fixed cells in 1% Triton X-100 in PBS+0.02%BSA for 2 minutes at room temperature.
2. Wash the cells 3 times with PBS.
Other Probes
Stress fibers Phalloidin-conjugaes bind F-actin
DAPI
nucleus MERGE
Stress Fibers Focal Adhesions
Anti-vinculin MoAb
Rhodamine-Phalloidin
Goat anti-mouse-FITC
Translocation of mutated protein to the mitochondria
PRIMARY SECONDARY
ANTIGEN FLUOROCHROME
ANTIBODY ANTIBODY
BIOTIN STREPTAVIDIN
Rabbit anti-Factor H
Guinea Pig anti-Insulin PoAb Biotinylated Goat anti-Rabbit
Donkey anti-Guinea Pig-Cy5 Streptavidin-FITC
An excitation filter in front of the mirror will control the excitation wavelength.
excitation
emission filter
filter
Hg
* dichroic mirror
specimen
Numerical Aperature (NA)
A solid cone of light that hits the specimen
Example:
Phase contrast lens low NA long working distance
High resolution 100x high NA short working distance
Confocal Microscopy
CCBB Confocal Core Facility (1999-2006) UV 351,364nM
Argon 488nM
Zeiss LSM510 with 4 color capability HeNe I 543nM
HeNe 2 633nM
In order to generate an entire image, the single point is scanned in an X-Y manner
as the laser focus is moved over the specimen.
Simplified Optics of a Confocal Microscope
The LSM 510
Glucagon-Rhodamine Overlay
Why is Confocal Microscopy Better?
2. Less Cross Talk
In most applications, fluorochromes have overlapping emission spectra. Hence, the
emission signals cannot be separated completely into different detection channels
resulting in “bleed through” or cross talk.
b-catenin
DAPI
MERGE
Why is Confocal Microscopy Better?
4. Three-Dimensional Reconstruction of Specimen
3D shadow projection
Tight junctions (red)
Cytoskeletal structures (green)
Prof. Wunderli-Allenpach
ETH, Zurich
Animated 3-Dimensional Reconstruction
Mitosis
www.Zeiss.com
Why is Confocal Microscopy Better?
5. Improved Resolution
Rat Cerebellum
Astrocytes (green)
Mn dismutase (red)
Jorg Lindeman
University of Magdeburg
Applications
1. Colocalization
3. FRET
Colocalization of Proteins
Colocalization of up to 4
different proteins
Insulin-Cy5 CRLR-FITC
Glucagon-Rhodamine
Colocalization
p53 a-tubulin
There are only certain pairs of fluorophores suitable for FRET experiments
since, besides other prereqisites (eg. dipole orientation or sufficient fluorescence
lifetime), the donor emission spectrum has to overlap the excitation spectrum of
the acceptor. Known FRET pairs are CFP/YFP, BFP/GFP, GFP/Rhodamine,
FITC/Cy3.
Yvona Ward
Building 37 Room 1066
301-594-2645
yward@helix.nih.gov