Professional Documents
Culture Documents
\
|
=
m
m
X
X
1 X k
t d
X d
5/3/2012
Methods used in Literature to discriminate between the
direct and indirect mechanism
1. Scanning electron micrographs
Some author observed the formation of pits and corrosion patterns in the
bacterial oxidation and concluded that direct bacterial attack of the surface
took place. However, pit Fornmation was also found to occur in chemical
oxidation of mineral.
SEM shown substantial intergranular variations in surface texture and these
grain edges and corners, defectcs, solid and fluid inclusion pit, cleaveages
and fractures were both inherited from mineral growth history.This sides
were chemically reactive because of high excess surface energy and this
explained the ocurrence of pit formation.
5/3/2012
3. Biomass yield on the mineral sulphide
Some authors claim that based on a comparison of the bacterial
growth yields on ferrous iron and the metal sulphide, a direct
mechanism has to be postulated.
Arkesteyn showed that the transport of electrons from sulphur to
oxygen yielded more energy for the bacterial CO
2
fixation than the
transport of electrons from ferrous iron.
5/3/2012
4. Bio-oxidation at iron free conditions
Some authors claimed a direct mechanism bycomparing a bio-
oxidation rate that was greater than the chemical, sterile leaching
rate at equal initial concentrations of ferric iron. However this
conclusion is incorrect, because in the sterile blank the used ferric
iron was not regenerated and ferrous iron accumulated..
5/3/2012
2. Cyclic Voltammetry
Technique of studying the kinetics of elevtrode processes : current
from the electrode is monitored as the potential of elctrode is
changed.
Measured cyclic measurements of pyrite electrodes in presence
and absence of T. Ferrooxidans were closely matched.
Slight differences were attributed to the presence of small amounts
of iron transferred with the inoculum into the experimental
solution.
5/3/2012
Engineers need to have a picture on whether a direct bacterial
oxudation of sulphide minerals is possible in principle, and secondly
on whether this is s relevant (rate determining) sub-processes with
respect to the overall bio-oxidation rate of sulphide minerals.
Determination of a reaction mechanism by analytical technique,
is often recognized as a scientifically solid method. However, from
literature, it has not proven to be conclusive with respect to the
bio-oxidation mechanism.
5/3/2012
THEORICAL AND EXPERIMENTAL METHODS IN
DETERMINING RATE-LIMITING SUB-PROCESSES
Chemical and bacterial oxidation rates presented in the literature
were mostly determined from off-line concentration
measurements in batch experiments.
Although this is an accepted method, it is limited in the accurate
determination of the oxidation rates as a function of the process
conditions, and consequently, in the determination of rate limiting
sub-processes.
5/3/2012
It is shown how general theory and experimental methods
used in other fields of the biotechnology can be applied to
kinetics experiments in biohydrometallurgy.
In the literature, often cell counts, organic nitrogen or protein
analyses were applied to determine the biomass concentration .
However, these methods are time consuming, and suffer of limited
accuracy when used to determine the bacterial growth rate.
Mass balance have not been checked in any of the kinetics studies.
5/3/2012
Mass and Charges Balances
Assuming that the biomass composition is represented by CH
1,8
O
0,5
N
0,2
and introducing Y
sx
as the biomass yield on ferrous iron, the
following stoichiometric equation for the bacterial oxidation of ferrous
iron results:
O
2
H f
3
Fe e
0. 2
N
0. 5
O
1. 8
CH
H d
2
Fe
sx
Y
1
2
O c
4
NH b
2
CO a
+
+
+
+
+
+
+ +
+
+
5/3/2012
Conservation of elements and charge must be provided
O
2
H
sx
Y 2
sx
1,2Y 1
3
Fe
sx
Y
1
0. 2
N
0. 5
O
1.8
CH
H
sx
Y
sx
0,2Y 1
2
Fe
sx
Y
1
2
O
sx
Y 4
sx
4. 2Y 1
4
NH 0. 2
2
CO
|
|
.
|
\
|
|
|
.
|
\
|
|
|
.
|
\
|
|
|
.
|
\
|
+
+
+
+
+
+
+
+
+
+
5/3/2012
Relation between the oxidation rate of ferrous iron and the
oxygen and carbon dioxide consumption rates: Degree of
Reduction Balance
2 2
2
O CO
Fe
r 4 r 4,2 r - =
+
This equation shows the effect of using an integrated
stoichiometric equation for ferrous iron oxidation and biomass
growth compared with :
2
2
O
Fe
r 4 r - =
+
5/3/2012
Yield and Maintenance
Primary process in baterai oxidation reactions is considered to be the
oxidation of substrate. These oxidation reactions generate energy that
is used by bacteria for growth and maintenance.
According the empirical Pirt relationship, the following equation
predicts the substrate oxidation rate that is required for both the
growth and maintenance:
x
C
s
m
Y
x
r
s
r
max
sx
+ =
5/3/2012
Specific Rates
Biomass specific oxidation rate of compound i, is defined as the rate
per C-mole of biomass:
q i= ri /Cx
So, the oxygen consumption rate per C-mole of biomass:
qO2 = r O2 /Cx
Biomass specific growth rate, , is defined by:
= rx /Cx
5/3/2012
s
m
max
sx
Y
1
sx
Y
1
+ =
Using the definitions of actual yield of biomass on substrate and
specific growth rate, Pirts relationship can be rewritten:
5/3/2012
Similary, introducing the maximun yield of biomass on
oxygen and the maintenance coefficient of biomass on
oxygen, the oxygen consumption rate required for growth
and maintenance of bacteria on a certain substrate
according to the Pirt equation is:
o
m
max
ox
Y
1
ox
Y
1
+ =
5/3/2012
Propositions
On line oxygen and carbon dioxide off-gas analyses
Determination of the biomass concentration from the carbon
dioxide analyses in the off-gas and applying the carbon balance
The ferrous iron ( any substrate) oxidation rate is calculated from
the oxygen and carbon dioxide consumption rate using the degree
of reduction balance
Application of a biological oxygen monitor as an analytical tool to
measure the oxygen consumption rate
of cell suspensions from batch or continuous cultures.
5/3/2012
Methods to Determine Rate Limiting Sub-processes
Simultaneous substrate oxidation experiments are perfomed in
the presence and absence of bacteria at equal ferrous to ferric iron
ratios and pH.
Other bacterial substrates oxidation kinetics are examined by the
measurement of the biomass specific consumption rate of
substrate grown cells in the presence and absence of substrate, at
equal ferrous to ferric iron ratios.
5/3/2012
5/3/2012
CONCLUSIONS
Theorcal fundam,entals used in biotechnology can be apply to
identify of sub-processes involved in bio-oxidation
Degree of reduction balance is an integrated stoichiometric
equation.
Through Pirts equation it can determine the energetic parameters
involved on the process
Theorical results can be experimentally verified by measurements
on line of variables
5/3/2012
En 1903, Henry propuso que la enzima se combina con la molcula de sustrato
para formar el complejo enzima-sustrato como paso necesario en la catlisis. L.
Michaelis y M. Menten, en 1913, ampliaron ese fundamento para proponer que la
enzima E, se combina con el sustrato S en forma reversible y rpida para formar el
complejo enzima-sustrato, ES, el que puede disociarse para generar el producto
de reaccin P y liberar la enzima E en un paso ms lento, el cual limita la
velocidad global, segn(6):
p E
4
k
3
k
ES
2
k
1
k
S E + +
5/3/2012
Al inicio de la reaccin, la concentracin del producto es insignificante de tal
manera que se puede despreciar la constante k
4
, de tal manera que la velocidad
inicial queda determinada por la descomposicin de ES.
Dado que la concentracin de complejo enzima-sustrato es difcil de medir
experimentalmente, su cuantificacin se logra a travs de una expresin analtica:
De este modo, las velocidades de formacin y descomposicin de ES :
sustrato en libre total
E E E + =
| || | S E de formacin de Velocidad
1
k ES =
5/3/2012
5/3/2012